Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2602.4 1309 100.0
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 2533.1 1309 97.2
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2529.2 1309 97.1
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2520.3 1324 95.9
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2519.2 1309 97.0
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2386.7 1312 90.9
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 2182.9 1317 82.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 2120.5 1316 80.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1862.0 1326 71.4
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1847.8 1327 70.8
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1822.0 1330 70.2
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1791.2 1329 68.3
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1746.9 1334 66.0
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1746.1 1330 66.3
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1741.9 1331 66.9
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1736.9 1333 66.6
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1734.5 1337 67.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1716.8 1331 65.2
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1715.3 1330 66.7
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1694.1 1324 65.6
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1684.8 1324 65.0
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1684.1 1338 65.1
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1678.7 1396 61.4
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1673.3 1338 64.9
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1669.4 1332 63.7
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1666.7 1285 65.1
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1666.4 1326 64.4
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1663.7 1329 64.1
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1663.3 1330 64.9
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1652.5 1368 63.1
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1650.6 1330 64.3
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1649.4 1335 63.6
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1322 63.8
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1643.6 1333 64.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1642.5 1318 64.0
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1641.3 1327 63.3
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1639.8 1345 61.7
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1639.4 1325 63.5
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1638.2 1244 65.9
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1632.5 1334 64.3
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1629.8 1336 62.6
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1628.2 1327 63.6
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1627.5 1475 58.0
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1625.5 1335 62.5
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1624.4 1335 62.8
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1623.2 1327 63.3
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1612.0 1344 61.9
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1612.0 1326 62.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1607.8 1216 66.2
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1606.7 1337 62.2
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1605.1 1216 66.3
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1600.5 1339 61.5
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1597.4 1340 61.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1583.5 1335 61.6
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1567.7 1334 60.6
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1334 60.6
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1565.8 1341 60.6
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1561.6 1325 61.6
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1557.3 1334 60.2
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1555.4 1335 60.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1550.8 1336 60.8
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1542.7 1332 60.2
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1337 59.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1531.9 1342 59.5
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1528.5 1332 59.2
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1526.1 1333 60.1
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1525.0 1333 58.8
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1517.7 1325 58.5
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1517.7 1319 59.1
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1515.0 1333 60.4
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1510.7 1333 59.0
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1488.8 1331 58.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1465.7 1321 58.2
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1459.1 1331 58.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1444.9 1329 57.2
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1423.7 1312 57.5
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1421.4 1312 57.5
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1421.4 1330 57.0
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1420.6 1326 57.2
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1414.4 1312 56.8
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1412.1 1312 56.7
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1412.1 1312 56.7
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1397.1 1330 56.8
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1378.6 1325 54.7
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1374.0 1339 55.6
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1372.5 1264 56.0
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1369.8 1314 54.6
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1277.3 1078 61.3
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1262.3 1320 52.5
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1246.1 1329 50.3
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1242.3 1336 51.4
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1219.9 985 62.9
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1211.1 986 63.5
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1209.9 1321 50.6
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1199.5 900 66.2
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1198.7 1342 48.7
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1142.9 1245 50.8
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1135.6 861 66.8
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.0e-289 1000.7 1297 46.2
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.1e-278 964.1 1332 42.0
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 3.8e-252 875.9 1295 40.2
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 6.5e-236 822.0 1320 39.3
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.9e-233 812.8 1134 41.3
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 3.1e-230 803.1 1323 37.6
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 9.4e-219 765.0 950 45.8
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.5e-179 634.0 482 64.5
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.3e-163 580.5 573 52.0
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 7.3e-163 579.3 579 56.8
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 9.3e-126 456.1 1145 29.6
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.3e-111 409.1 324 64.5
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 1.1e-110 406.0 291 66.7
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.1e-99 369.4 322 56.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 6.3e-98 363.6 363 55.1
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.1e-93 348.6 1084 29.0
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 7.7e-80 303.5 259 62.9
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 9.8e-67 260.0 310 47.1
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.7e-63 249.2 205 62.0
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.6e-56 226.1 301 44.9
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.3e-55 223.0 185 60.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.3e-55 223.0 234 53.0
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.2e-49 200.3 151 66.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 7.8e-40 170.6 119 69.7
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 9.0e-36 157.1 128 67.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 9.6e-30 137.1 660 25.0
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.0e-27 129.4 123 52.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 1.4e-17 96.7 105 54.3
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 5.1e-15 88.2 86 45.3
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 5.7e-14 84.7 104 51.9
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 6.1e-08 64.7 66 57.6
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 1.0e-07 63.9 131 34.4
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.7e-06 58.2 47 59.6


User provided reference genes

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