Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G2411 Fragaria x ananassa HOM05D004229 ORTHO05D005468 6.2e-163 577.4 294 100.0
FAN18G2159 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.0e-141 506.9 319 83.4
RcHm_v2.0_Chr1g0362641 Rosa chinensis HOM05D004229 ORTHO05D005468 9.7e-124 447.2 321 72.9
FAN10G0146 Fragaria x ananassa HOM05D004229 ORTHO05D005468 4.5e-121 438.3 320 71.2
Prupe.2G209100 Prunus persica HOM05D004229 ORTHO05D005468 5.9e-121 438.0 320 69.4
FAN03G3391 Fragaria x ananassa HOM05D004229 ORTHO05D005468 7.7e-121 437.6 319 71.5
Cfa001676 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.0e-120 437.2 321 69.5
FvH4_7g18830 Fragaria vesca HOM05D004229 ORTHO05D005468 2.9e-120 435.6 319 71.5
Haze_16858 Corylus avellana HOM05D004229 ORTHO05D005468 2.5e-119 432.6 329 68.4
FAN06G0013 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-119 432.6 319 71.2
FAN06G0297 Fragaria x ananassa HOM05D004229 ORTHO05D005468 2.5e-119 432.6 319 71.2
Glyma.10G208100 Glycine max HOM05D004229 ORTHO05D005468 6.1e-118 427.9 321 67.6
Medtr1g094200 Medicago truncatula HOM05D004229 ORTHO05D005468 1.0e-117 427.2 321 67.3
PGR142G2592 Punica granatum HOM05D004229 ORTHO05D005468 1.8e-117 426.4 321 67.3
vmacro07123 Vaccinium macrocarpon HOM05D004229 ORTHO05D005468 1.8e-117 426.4 321 67.3
Psat6g180120 Pisum sativum HOM05D004229 ORTHO05D005468 2.3e-117 426.0 321 67.3
Sabra08G0023800 Salix brachista HOM05D004229 ORTHO05D005468 5.2e-117 424.9 319 67.4
GSVIVG01016224001 Vitis vinifera HOM05D004229 ORTHO05D005468 5.2e-117 424.9 322 67.4
Thecc.10G082900 Theobroma cacao HOM05D004229 ORTHO05D005468 6.8e-117 424.5 319 67.7
Dinv31228 Davidia involucrata HOM05D004229 ORTHO05D005468 1.2e-116 423.7 317 66.9
VMungo1080G0141 Vigna mungo HOM05D004229 ORTHO05D005468 1.5e-116 423.3 321 67.3
Rhsim03G0230200 Rhododendron simsii HOM05D004229 ORTHO05D005468 2.0e-116 422.9 321 66.7
Actinidia34806 Actinidia chinensis HOM05D004229 ORTHO05D005468 3.4e-116 422.2 319 66.5
CSS0012456 Camellia sinensis var. sinensis HOM05D004229 ORTHO05D005468 9.8e-116 420.6 321 66.0
Eucgr.G02865 Eucalyptus grandis HOM05D004229 ORTHO05D005468 9.8e-116 420.6 321 67.9
Lj2C19G5 Lonicera japonica HOM05D004229 ORTHO05D005468 9.8e-116 420.6 319 66.8
Phvul.005G180400 Phaseolus vulgaris HOM05D004229 ORTHO05D005468 2.8e-115 419.1 321 67.0
Potri.008G035600 Populus trichocarpa HOM05D004229 ORTHO05D005468 3.7e-115 418.7 319 66.5
Ca_10545_v3 Cicer arietinum L. HOM05D004229 ORTHO05D005468 6.3e-115 417.9 321 66.0
Actinidia38868 Actinidia chinensis HOM05D004229 ORTHO05D005468 1.8e-114 416.4 319 66.1
ClCG05G021220 Citrullus lanatus HOM05D004229 ORTHO05D005468 7.0e-114 414.5 321 65.7
Manes.15G095600 Manihot esculenta HOM05D004229 ORTHO05D005468 9.1e-114 414.1 320 67.2
TAR633G0060 Trochodendron aralioides HOM05D004229 ORTHO05D005468 9.1e-114 414.1 321 64.5
CANSAT56G0520 Cannabis sativa HOM05D004229 ORTHO05D005468 1.6e-113 413.3 319 66.8
MELO3C012405.2 Cucumis melo HOM05D004229 ORTHO05D005468 1.6e-113 413.3 321 65.4
CsaV3_5G036050 Cucumis sativus L. HOM05D004229 ORTHO05D005468 1.6e-113 413.3 321 65.4
Duzib114G0264 Durio zibethinus HOM05D004229 ORTHO05D005468 2.7e-113 412.5 319 65.2
Gorai.012G005800 Gossypium raimondii HOM05D004229 ORTHO05D005468 2.7e-113 412.5 319 65.2
Solyc05g055600.4 Solanum lycopersicum HOM05D004229 ORTHO05D005468 3.5e-113 412.1 318 66.0
Sopen05g034050 Solanum pennellii HOM05D004229 ORTHO05D005468 3.5e-113 412.1 318 66.0
Gohir.D04G004600 Gossypium hirsutum HOM05D004229 ORTHO05D005468 5.9e-113 411.4 319 64.9
Gohir.A05G411400 Gossypium hirsutum HOM05D004229 ORTHO05D005468 7.7e-113 411.0 319 64.9
Sed0026489 Sechium edule HOM05D004229 ORTHO05D005468 7.7e-113 411.0 321 65.1
FAN13G1026 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.3e-112 410.2 270 83.0
COL.COLO4_17138 Corchorus olitorius HOM05D004229 ORTHO05D005468 2.2e-112 409.5 319 64.6
MD01G1103400 Malus domestica HOM05D004229 ORTHO05D005468 2.9e-112 409.1 321 65.7
Nn2g13792 Nelumbo nucifera HOM05D004229 ORTHO05D003832 2.9e-112 409.1 321 63.6
TWI38G0761 Tripterygium wilfordii HOM05D004229 ORTHO05D005468 1.5e-111 406.8 320 64.4
FAN10G1099 Fragaria x ananassa HOM05D004229 ORTHO05D005468 1.9e-111 406.4 320 67.5
QL08p054613 Quercus lobata HOM05D004229 ORTHO05D005468 2.5e-111 406.0 347 63.4
Peaxi162Scf00176g01415 Petunia axillaris HOM05D004229 ORTHO05D005468 3.2e-111 405.6 339 62.8
Sc20g0001740 Simmondsia chinensis HOM05D004229 ORTHO05D005468 5.5e-111 404.8 321 63.9
BcaC07g39772 Brassica carinata HOM05D004229 ORTHO05D005468 7.2e-111 404.4 319 63.9
BcaNung06953 Brassica carinata HOM05D004229 ORTHO05D005468 7.2e-111 404.4 319 63.9
A09p47800 Brassica napus HOM05D004229 ORTHO05D005468 7.2e-111 404.4 319 63.9
C08p30050 Brassica napus HOM05D004229 ORTHO05D005468 7.2e-111 404.4 319 63.9
BolC8t50614H Brassica oleracea HOM05D004229 ORTHO05D005468 7.2e-111 404.4 319 63.9
EL10Ac7g16698 Beta vulgaris HOM05D004229 ORTHO05D005468 1.6e-110 403.3 344 60.5
BcaB01g00152 Brassica carinata HOM05D004229 ORTHO05D005468 1.6e-110 403.3 319 64.3
Carub.0005s2147 Capsella rubella HOM05D004229 ORTHO05D005468 2.7e-110 402.5 319 63.6
THA.LOC104826473 Tarenaya hassleriana HOM05D004229 ORTHO05D005468 2.7e-110 402.5 319 65.8
Ciclev10031072m.g Citrus clementina HOM05D004229 ORTHO05D005468 3.6e-110 402.1 320 64.7
HanXRQChr09g0248221 Helianthus annuus HOM05D004229 ORTHO05D005468 3.6e-110 402.1 320 62.5
AL5G35970 Arabidopsis lyrata HOM05D004229 ORTHO05D005468 6.1e-110 401.4 319 63.3
Oeu000792.2 Olea europaea HOM05D004229 ORTHO05D005468 6.1e-110 401.4 345 60.3
Sp5g07560 Schrenkiella parvula HOM05D004229 ORTHO05D005468 6.1e-110 401.4 319 63.9
FvH4_5g35750 Fragaria vesca HOM05D004229 ORTHO05D005468 2.3e-109 399.4 286 78.0
HanXRQChr12g0376891 Helianthus annuus HOM05D004229 ORTHO05D005468 3.0e-109 399.1 320 61.9
Cc02_g10960 Coffea canephora HOM05D004229 ORTHO05D005468 5.2e-109 398.3 320 63.8
Thhalv10010229m.g Eutrema salsugineum HOM05D004229 ORTHO05D005468 6.8e-109 397.9 319 63.6
Lj5g0013282 Lotus japonicus HOM05D004229 ORTHO05D005468 6.8e-109 397.9 327 63.6
CAN.G694.36 Capsicum annuum HOM05D004229 ORTHO05D005468 5.7e-108 394.8 326 63.2
BraA09t40237Z Brassica rapa HOM05D004229 ORTHO05D005468 2.8e-107 392.5 339 60.2
AT3G54860 Arabidopsis thaliana HOM05D004229 ORTHO05D005468 4.9e-107 391.7 319 61.4
Zm00001eb356850 Zea mays HOM05D004229 ORTHO05D005468 6.3e-107 391.3 319 61.8
Aa31sc141G10 Aethionema arabicum HOM05D004229 ORTHO05D005468 2.4e-106 389.4 319 63.6
CARHR164840 Cardamine hirsuta HOM05D004229 ORTHO05D005468 2.4e-106 389.4 322 62.1
PSO339G0163 Papaver somniferum HOM05D004229 ORTHO05D005468 7.0e-106 387.9 318 61.3
PGSC0003DMG400023478 Solanum tuberosum HOM05D004229 ORTHO05D005468 9.2e-106 387.5 317 63.1
Os04g0223000 Oryza sativa ssp. japonica HOM05D004229 ORTHO05D005468 1.2e-105 387.1 319 61.4
Aqoxy4G03296 Aquilegia oxysepala HOM05D004229 ORTHO05D005468 1.6e-105 386.7 319 61.4
MSTRG.27482 Avicennia marina HOM05D004229 ORTHO05D005468 1.6e-105 386.7 321 60.1
ATR1132G004 Amborella trichopoda HOM05D004229 ORTHO05D005468 2.7e-105 386.0 322 62.1
Atru.chr12.837 Acer truncatum HOM05D004229 ORTHO05D005468 3.5e-105 385.6 322 61.5
Migut.F01959 Erythranthe guttata HOM05D004229 ORTHO05D005468 5.9e-105 384.8 321 59.8
SGA_v2.0_scaffold62G21390 Striga asiatica HOM05D004229 ORTHO05D005468 5.9e-105 384.8 321 61.1
CDE09G0908 Ceratophyllum demersum HOM05D004229 ORTHO05D005468 1.3e-104 383.6 321 60.4
PSO801G0085 Papaver somniferum HOM05D004229 ORTHO05D005468 1.3e-104 383.6 319 61.4
Nitab4.5_0001760g0040 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.3e-104 382.9 321 61.7
arahy.Tifrunner.gnm1.ann1.1PX64U Arachis hypogaea HOM05D004229 ORTHO05D005468 4.7e-102 375.2 321 62.6
DCAR_006417 Daucus carota HOM05D004229 ORTHO05D005468 2.3e-101 372.9 321 60.7
Nitab4.5_0000096g0310 Nicotiana tabacum HOM05D004229 ORTHO05D005468 2.2e-99 366.3 349 56.7
SalBow4G2353 Salvia bowleyana HOM05D004229 ORTHO05D005468 2.2e-99 366.3 323 57.0
SHI08894 Sapria himalayana HOM05D004229 ORTHO05D005468 1.4e-98 363.6 321 58.9
Hund24846 Selenicereus undatus HOM05D004229 ORTHO05D005468 7.0e-98 361.3 290 63.8
Lsat_1_v5_gn_9_70141 Lactuca sativa HOM05D004229 ORTHO05D005468 2.0e-97 359.8 304 60.5
CiPaw.01G268900 Carya illinoinensis HOM05D004229 ORTHO05D005468 5.9e-97 358.2 321 60.4
arahy.Tifrunner.gnm1.ann1.DJS8Z9 Arachis hypogaea HOM05D004229 ORTHO05D005468 6.2e-94 348.2 321 58.9
arahy.Tifrunner.gnm1.ann1.ET3M0C Arachis hypogaea HOM05D004229 ORTHO05D005468 8.0e-94 347.8 329 59.3
arahy.Tifrunner.gnm1.ann1.LC1BQN Arachis hypogaea HOM05D004229 ORTHO05D005468 1.8e-93 346.7 321 58.9
SalBow4G2572 Salvia bowleyana HOM05D004229 ORTHO05D005468 4.0e-93 345.5 306 56.9
QL08p054435 Quercus lobata HOM05D004229 ORTHO05D005468 1.9e-87 326.6 295 61.0
Carub.0005s2206 Capsella rubella HOM05D004229 ORTHO05D005468 3.3e-87 325.9 317 56.5
unitig_899.g14450 Utricularia gibba HOM05D004229 ORTHO05D005468 3.3e-87 325.9 317 54.9
Sabra10G0174900 Salix brachista HOM05D004229 ORTHO05D005468 1.4e-85 320.5 270 61.5
PSO170G6718 Papaver somniferum HOM05D004229 ORTHO05D005468 2.3e-85 319.7 282 57.1
arahy.Tifrunner.gnm1.ann1.LJ1MV6 Arachis hypogaea HOM05D004229 ORTHO05D005468 1.3e-83 313.9 331 55.0
arahy.Tifrunner.gnm1.ann1.EYW761 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.7e-83 312.4 304 57.6
MD07G1170300 Malus domestica HOM05D004229 ORTHO05D005468 3.7e-83 312.4 332 52.7
Mapoly0054s0015 Marchantia polymorpha HOM05D004229 ORTHO05D005468 1.1e-82 310.8 321 50.2
AUR62036467 Chenopodium quinoa HOM05D004229 ORTHO05D005468 2.1e-78 296.6 316 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2563 Anthoceros agrestis HOM05D004229 ORTHO05D005468 2.8e-78 296.2 315 47.6
Potri.010G226600 Populus trichocarpa HOM05D004229 ORTHO05D005468 4.0e-77 292.4 230 64.8
Cpa.g.sc1603.2 Carica papaya HOM05D004229 ORTHO05D005468 6.8e-77 291.6 233 63.1
SMO358G0561 Selaginella moellendorffii HOM05D004229 ORTHO05D005468 8.4e-75 284.6 324 47.2
Pp3c17_5740 Physcomitrium patens HOM05D004229 ORTHO05D005468 2.7e-73 279.6 327 47.4
ECA232G1554 Erigeron canadensis HOM05D004229 ORTHO05D005468 2.3e-72 276.6 231 61.5
HPP92_008482 Vanilla planifolia HOM05D004229 ORTHO05D005468 3.8e-67 259.2 233 55.8
HPP92_008472 Vanilla planifolia HOM05D004229 ORTHO05D005468 1.1e-53 214.5 277 44.8
AUR62041377 Chenopodium quinoa HOM05D004229 ORTHO05D005468 4.6e-49 199.1 190 52.6
Lalb_Chr21g0313701 Lupinus albus HOM05D004229 ORTHO05D005468 8.7e-48 194.9 193 53.9
arahy.Tifrunner.gnm1.ann1.I4EZ5E Arachis hypogaea HOM05D004229 ORTHO05D005468 3.7e-46 189.5 201 53.2
Lalb_Chr21g0313711 Lupinus albus HOM05D004229 ORTHO05D005468 7.6e-44 181.8 114 77.2
CBR_g52604 Chara braunii HOM05D000019 ORTHO05D000048 5.7e-39 165.6 240 37.9
QL08p054558 Quercus lobata HOM05D004229 ORTHO05D005468 9.6e-39 164.9 126 67.5
PRCOL_00000311 Prasinoderma coloniale HOM05D004229 ORTHO05D005468 1.8e-37 160.6 341 29.9
Cre12.g515550 Chlamydomonas reinhardtii HOM05D004229 ORTHO05D005468 1.1e-31 141.4 364 28.6
MBI09_g03016_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.9e-31 140.6 86 75.6
RcHm_v2.0_Chr7g0237401 Rosa chinensis HOM05D004229 ORTHO05D005468 2.8e-30 136.7 120 60.0
RcHm_v2.0_Chr6g0252451 Rosa chinensis HOM05D004229 ORTHO05D005468 4.8e-30 136.0 132 53.8
MCO07G397 Micromonas commoda HOM05D004229 ORTHO05D005468 2.0e-28 130.6 405 25.7
CBR_g52606 Chara braunii HOM05D004229 ORTHO05D005468 1.2e-25 121.3 102 59.8
RcHm_v2.0_Chr7g0237391 Rosa chinensis HOM05D004229 ORTHO05D005468 1.0e-24 118.2 72 80.6
arahy.Tifrunner.gnm1.ann1.ED1Y34 Arachis hypogaea HOM05D004229 ORTHO05D005468 3.3e-23 113.2 111 54.1
SEGI_10422 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 2.2e-19 100.5 155 41.3
MELO3C029984.2 Cucumis melo HOM05D004229 ORTHO05D025211 6.5e-19 99.0 77 67.5
Peaxi162Scf00176g01310 Petunia axillaris HOM05D004229 ORTHO05D005468 6.7e-16 89.0 183 35.0
AUR62041379 Chenopodium quinoa HOM05D004229 ORTHO05D000001 6.3e-14 82.4 73 60.3
Sopen01g012580 Solanum pennellii HOM05D004229 ORTHO05D026150 8.2e-14 82.0 52 69.2
MELO3C028235.2 Cucumis melo HOM05D001963 ORTHO05D001863 1.8e-13 80.9 51 68.6
MBI09_g03431_MAGBIO Magnolia biondii HOM05D004229 ORTHO05D005468 1.8e-13 80.9 58 60.3
MELO3C030131.2 Cucumis melo HOM05D004229 ORTHO05D025211 1.2e-12 78.2 52 75.0
SEGI_16046 Sequoiadendron giganteum HOM05D004229 ORTHO05D005468 3.5e-12 76.6 54 66.7
MELO3C027676.2 Cucumis melo HOM05D004229 ORTHO05D025211 4.5e-12 76.3 51 72.5
Sopen01g007880 Solanum pennellii HOM05D000004 ORTHO05D000002 4.5e-12 76.3 52 67.3
Cfa022006 Carpinus fangiana HOM05D004229 ORTHO05D005468 1.0e-11 75.1 150 28.7
SEGI_01819 Sequoiadendron giganteum HOM05D004229 ORTHO05D025211 3.6e-09 66.6 52 63.5
Solyc01g016900.1 Solanum lycopersicum HOM05D004229 ORTHO05D026150 1.4e-08 64.7 53 56.6
TPR.G10283 Trifolium pratense HOM05D004229 ORTHO05D005468 1.4e-08 64.7 38 81.6
Sopen05g016270 Solanum pennellii HOM05D004229 ORTHO05D026150 2.2e-06 57.4 72 48.6
Solyc11g030770.1 Solanum lycopersicum HOM05D004229 ORTHO05D005468 3.7e-06 56.6 44 61.4


User provided reference genes

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