Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 9.8e-124 446.8 226 100.0
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 3.5e-121 438.3 227 98.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.9e-121 437.6 228 98.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.7e-121 437.2 227 98.2
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 1.8e-109 399.4 231 89.2
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.7e-99 365.2 184 97.8
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 4.9e-99 364.8 240 82.5
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.1e-95 353.6 240 78.8
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-93 346.7 241 78.4
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 3.2e-90 335.5 202 80.7
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 5.4e-90 334.7 233 75.5
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 2.1e-89 332.8 226 74.8
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 7.8e-89 330.9 226 75.7
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.7e-88 329.7 179 87.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 1.7e-88 329.7 206 80.1
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.3e-88 329.3 216 77.3
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.1e-87 327.0 198 81.8
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 1.1e-87 327.0 192 82.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 1.5e-87 326.6 179 86.6
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.5e-87 325.9 214 76.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.5e-87 325.9 231 72.7
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 2.5e-87 325.9 228 75.4
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 3.3e-87 325.5 221 74.7
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 3.3e-87 325.5 179 86.6
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 5.6e-87 324.7 238 71.0
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 5.6e-87 324.7 237 73.0
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 7.3e-87 324.3 209 78.5
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 7.3e-87 324.3 180 88.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 9.6e-87 323.9 188 83.0
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 9.6e-87 323.9 181 87.8
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 9.6e-87 323.9 181 87.8
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.2e-86 323.6 227 74.9
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.2e-86 323.6 179 84.9
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.6e-86 323.2 231 70.6
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.1e-86 322.8 203 79.3
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.1e-86 322.8 232 71.1
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 2.1e-86 322.8 226 74.3
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 2.8e-86 322.4 224 74.1
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 2.8e-86 322.4 229 75.5
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.8e-86 322.4 228 74.1
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.8e-86 322.4 217 74.2
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.8e-86 322.4 231 72.3
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.6e-86 322.0 241 68.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.6e-86 322.0 236 70.3
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.6e-86 322.0 182 83.5
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 4.7e-86 321.6 180 87.2
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 6.2e-86 321.2 179 86.6
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 6.2e-86 321.2 179 86.6
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 6.2e-86 321.2 225 73.8
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 8.1e-86 320.9 218 74.8
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 8.1e-86 320.9 179 86.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 8.1e-86 320.9 233 71.2
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.1e-86 320.9 181 86.2
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.4e-85 320.1 239 73.2
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.4e-85 320.1 242 71.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 1.4e-85 320.1 226 75.2
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 2.4e-85 319.3 179 85.5
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.4e-85 319.3 203 78.8
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.4e-85 319.3 236 71.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 3.1e-85 318.9 238 71.0
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 3.1e-85 318.9 178 86.0
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 3.1e-85 318.9 236 70.8
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 4.0e-85 318.5 186 82.8
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.2e-85 318.2 227 71.4
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 5.2e-85 318.2 189 79.9
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.8e-85 317.8 233 71.2
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 6.8e-85 317.8 216 74.5
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 1.2e-84 317.0 225 73.3
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 1.2e-84 317.0 178 85.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.5e-84 316.6 229 72.9
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 2.0e-84 316.2 179 85.5
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 2.0e-84 316.2 234 70.9
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 2.0e-84 316.2 179 85.5
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 2.0e-84 316.2 195 79.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 2.6e-84 315.8 234 70.5
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 2.6e-84 315.8 236 71.2
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.6e-84 315.8 235 69.4
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.4e-84 315.5 234 70.1
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 3.4e-84 315.5 177 83.1
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.4e-84 315.1 177 84.7
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.8e-84 314.7 232 71.1
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 5.8e-84 314.7 228 71.5
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 9.9e-84 313.9 210 74.3
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 9.9e-84 313.9 188 81.4
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.2e-83 312.8 211 74.4
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 2.9e-83 312.4 234 68.4
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 3.8e-83 312.0 227 72.2
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 3.8e-83 312.0 227 72.2
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.8e-83 312.0 233 69.5
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 4.9e-83 311.6 179 83.2
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 6.4e-83 311.2 226 72.1
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 6.4e-83 311.2 227 71.8
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 8.4e-83 310.8 227 70.5
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 8.4e-83 310.8 185 80.5
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.1e-82 310.5 234 69.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.4e-82 310.1 195 76.9
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 2.4e-82 309.3 178 83.1
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 3.2e-82 308.9 176 83.5
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-81 307.0 217 71.9
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 2.7e-81 305.8 229 69.4
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.7e-81 305.8 179 81.0
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.7e-80 303.1 243 65.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 1.7e-80 303.1 187 76.5
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 4.3e-79 298.5 162 86.4
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 5.6e-79 298.1 180 80.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.1e-78 296.2 166 83.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 4.8e-78 295.0 179 78.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.1e-77 293.9 233 67.8
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 6.4e-75 284.6 185 71.9
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 8.4e-75 284.3 206 71.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 8.7e-72 274.2 150 85.3
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 4.3e-71 271.9 277 57.0
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.8e-69 266.5 179 70.9
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 2.6e-68 262.7 228 62.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 2.9e-67 259.2 159 71.7
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.4e-66 256.1 237 59.5
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.1e-66 254.6 179 71.5
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.9e-64 248.8 241 59.8
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 5.6e-63 245.0 194 61.9
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.6e-60 236.1 192 64.6
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 8.7e-56 221.1 122 86.9
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.7e-49 199.5 140 70.0
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 6.1e-49 198.4 156 66.0
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.2e-46 188.0 110 78.2
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 3.1e-45 186.0 150 64.7
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 1.0e-43 181.0 112 82.1
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.2e-43 179.9 146 65.1
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 7.9e-41 171.4 101 81.2
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 3.9e-40 169.1 104 79.8
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 5.1e-40 168.7 104 78.8
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.2e-34 149.4 104 71.2
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.3e-31 139.4 147 42.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.4e-31 139.0 82 82.9
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 4.4e-31 139.0 124 59.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 7.4e-31 138.3 78 87.2
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 7.7e-28 128.3 75 84.0
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.5e-26 122.1 71 85.9
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.8e-21 107.1 77 72.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 1.6e-17 94.0 106 51.9
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 3.0e-16 89.7 112 50.9
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 2.6e-15 86.7 92 53.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.7e-15 85.5 49 79.6
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.5e-10 70.1 47 70.2
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 7.2e-10 68.6 55 60.0
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 3.0e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 3.0e-08 63.2 28 92.9
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.5e-07 60.8 32 81.2


User provided reference genes

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