Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-159 566.6 323 100.0
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.4e-155 553.1 324 98.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 2.4e-155 552.4 324 97.8
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.0e-154 549.3 326 96.9
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.9e-154 547.0 325 97.2
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.6e-143 513.1 325 92.0
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 9.6e-133 477.2 326 85.6
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.1e-128 463.8 330 84.5
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 1.1e-123 447.2 330 82.7
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.2e-122 443.7 326 81.0
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.5e-122 443.4 326 80.1
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 3.4e-122 442.2 326 80.4
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.2e-121 439.5 331 79.2
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.5e-121 438.0 330 80.0
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.1e-120 437.2 326 78.5
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-119 433.3 329 80.9
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.8e-118 429.9 330 78.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.3e-118 429.5 327 81.7
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 2.3e-118 429.5 326 80.7
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 2.3e-118 429.5 329 77.5
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.6e-117 426.0 326 79.1
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.3e-117 425.6 336 78.0
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 5.7e-117 424.9 333 75.7
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.7e-117 424.9 325 80.9
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-116 423.7 328 75.9
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.7e-116 423.3 327 77.7
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.2e-116 422.9 325 80.6
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.7e-116 422.2 329 76.3
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 8.2e-116 421.0 335 77.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 1.1e-115 420.6 325 77.2
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.8e-115 419.9 328 75.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.4e-115 419.5 304 81.9
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 4.1e-115 418.7 330 74.5
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.5e-114 416.8 332 76.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.6e-114 416.0 328 76.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 4.5e-114 415.2 326 75.2
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.3e-113 413.7 335 75.5
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.7e-113 413.3 331 76.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 2.2e-113 412.9 326 74.5
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 2.2e-113 412.9 326 74.5
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 5.0e-113 411.8 325 75.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 5.0e-113 411.8 328 75.3
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.5e-113 411.4 328 75.3
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 6.5e-113 411.4 334 74.6
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 6.5e-113 411.4 326 75.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 6.5e-113 411.4 358 69.6
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.1e-112 410.6 327 76.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.4e-112 410.2 326 74.5
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.4e-112 410.2 326 74.5
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.5e-112 409.5 328 75.0
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 5.5e-112 408.3 330 74.5
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 9.4e-112 407.5 337 73.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.2e-111 407.1 327 74.3
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.2e-111 407.1 326 73.3
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 2.1e-111 406.4 340 72.4
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-111 406.0 335 74.6
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.6e-111 405.6 333 74.5
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 3.6e-111 405.6 326 73.9
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-110 403.7 332 73.2
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-110 403.7 329 73.3
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-110 403.7 332 74.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-110 403.3 326 72.4
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.8e-110 403.3 324 75.0
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.3e-110 402.9 326 73.0
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 2.3e-110 402.9 331 73.4
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.3e-110 402.9 344 72.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.3e-110 402.9 328 72.0
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.0e-110 402.5 326 72.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 5.2e-110 401.7 329 75.1
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 6.7e-110 401.4 322 73.9
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.8e-110 401.0 328 72.0
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.1e-109 400.6 326 72.1
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.1e-109 400.6 332 73.2
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 2.6e-109 399.4 325 72.0
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 3.3e-109 399.1 327 72.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.4e-109 398.7 333 71.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 4.4e-109 398.7 331 72.5
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 5.7e-109 398.3 333 73.3
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 9.7e-109 397.5 320 73.4
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-108 397.1 322 73.3
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-108 397.1 322 73.3
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.7e-108 396.7 322 73.3
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.7e-108 396.7 325 72.3
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.7e-108 396.7 326 73.3
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 2.2e-108 396.4 324 72.8
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 2.2e-108 396.4 324 72.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 2.8e-108 396.0 284 79.9
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.7e-108 395.6 327 73.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.7e-108 395.6 325 73.8
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.8e-108 395.2 338 71.6
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 8.2e-108 394.4 329 72.3
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 8.2e-108 394.4 325 73.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 8.2e-108 394.4 328 72.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 8.2e-108 394.4 330 71.8
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.1e-107 394.0 322 73.3
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.1e-107 394.0 323 70.6
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.4e-107 393.7 321 72.9
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.4e-107 393.7 325 72.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 1.8e-107 393.3 329 71.7
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.4e-107 392.9 330 71.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.4e-107 392.9 335 72.8
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 3.1e-107 392.5 326 72.7
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 7.0e-107 391.3 321 72.3
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 9.1e-107 391.0 326 72.1
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 2.6e-106 389.4 327 71.3
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 3.5e-106 389.0 329 71.7
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 4.5e-106 388.7 330 70.0
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 4.5e-106 388.7 327 72.2
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.5e-106 388.7 325 70.8
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 5.9e-106 388.3 333 71.2
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 7.7e-106 387.9 277 79.4
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.3e-105 387.1 316 73.4
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.8e-105 385.6 326 71.5
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 5.0e-105 385.2 334 70.4
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 8.5e-105 384.4 330 73.6
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.1e-104 384.0 333 70.0
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 4.2e-104 382.1 327 71.6
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 4.2e-104 382.1 382 64.4
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 5.5e-104 381.7 326 70.6
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 9.4e-104 380.9 327 70.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 2.7e-103 379.4 327 70.9
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.0e-103 377.9 259 83.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.0e-102 377.5 314 72.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.8e-102 376.7 331 70.4
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.0e-102 375.6 325 69.8
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.0e-102 375.6 292 76.4
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.6e-101 372.9 301 74.8
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 9.7e-101 370.9 326 70.9
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.7e-100 370.2 304 75.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 4.8e-100 368.6 260 82.7
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.2e-100 367.9 309 65.7
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.1e-99 365.9 255 72.9
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 4.1e-99 365.5 301 71.8
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.7e-97 360.1 277 72.9
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.9e-96 356.7 308 73.4
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 9.4e-96 354.4 273 73.6
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 9.4e-96 354.4 299 73.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.1e-95 353.2 231 89.6
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-95 352.8 333 67.0
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.6e-95 352.4 300 73.0
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.5e-93 347.1 231 86.1
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 7.5e-93 344.7 261 75.1
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 5.4e-91 338.6 308 67.5
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.5e-90 335.5 264 73.5
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.7e-90 334.7 226 85.8
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.3e-84 315.1 269 65.4
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.8e-83 313.5 325 62.8
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.8e-83 313.5 325 62.8
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 2.4e-83 313.2 272 66.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-82 310.5 324 54.3
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 5.6e-80 302.0 276 60.9
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.6e-79 300.4 253 60.9
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 7.5e-77 291.6 360 56.7
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.7e-76 290.4 250 57.6
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.2e-76 290.0 239 78.7
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 4.6e-74 282.3 251 72.9
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.1e-71 273.5 250 73.6
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.3e-70 270.0 196 81.1
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 5.2e-70 268.9 257 68.1
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 9.8e-69 264.6 206 67.0
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 2.1e-58 230.3 273 44.7
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 5.2e-54 215.7 303 46.9
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 8.9e-54 214.9 149 71.8
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.1e-50 203.8 124 82.3
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.0e-50 202.2 125 79.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 9.0e-46 188.3 149 65.8
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 4.4e-45 186.0 190 69.5
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.8e-44 183.0 132 78.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.0e-41 174.9 204 62.7
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.6e-32 142.5 261 37.9
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 9.6e-32 141.7 140 57.1
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.3e-31 141.4 92 76.1
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.1e-31 140.6 99 74.7
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 5.3e-30 136.0 108 74.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 2.7e-26 123.6 87 69.0
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 3.8e-20 103.2 157 52.9
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.0e-17 95.1 107 67.3
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.3e-16 90.1 156 51.9
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.3e-15 88.2 83 78.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 6.3e-15 85.9 94 55.3
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 5.0e-12 76.3 93 47.3
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.4e-06 57.4 311 23.5


User provided reference genes

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