Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 0.0e+00 1130.9 568 100.0
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.2e-280 968.0 555 89.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-275 952.2 598 82.9
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 6.8e-275 950.3 598 82.9
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.5e-274 949.1 580 84.8
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 4.1e-272 941.0 598 82.3
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 6.9e-259 897.1 599 79.0
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-251 872.5 632 75.3
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.8e-236 822.0 515 83.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 7.2e-224 780.8 597 72.7
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 1.8e-198 696.4 586 63.5
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 1.7e-196 689.9 599 62.1
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 7.5e-189 664.5 599 59.9
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 9.2e-155 551.2 611 51.1
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 6.6e-153 545.0 600 51.0
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 2.1e-151 540.0 592 50.7
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 1.2e-146 524.2 568 50.2
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.6e-146 522.3 587 50.4
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 1.7e-145 520.4 599 49.9
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 3.3e-144 516.2 584 48.8
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 1.8e-142 510.4 605 47.4
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.0e-142 509.2 589 50.1
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 2.0e-141 506.9 598 47.2
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 2.0e-141 506.9 594 49.5
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 3.8e-140 502.7 571 47.5
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 4.9e-140 502.3 592 48.6
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.4e-139 500.7 599 47.1
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 1.2e-138 497.7 602 47.7
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 3.5e-138 496.1 576 49.7
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 1.0e-137 494.6 597 48.1
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.7e-137 491.9 598 46.5
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.1e-135 486.9 589 46.5
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.1e-134 484.6 572 48.4
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 1.4e-134 484.2 588 46.1
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 1.4e-134 484.2 588 45.9
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.8e-134 483.8 598 46.7
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 1.8e-134 483.8 571 48.5
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.9e-134 481.9 598 46.5
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 2.0e-133 480.3 589 46.2
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 7.6e-133 478.4 598 47.3
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 2.9e-132 476.5 470 54.0
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 8.4e-132 474.9 598 47.0
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 3.2e-131 473.0 583 45.5
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 4.2e-131 472.6 594 45.3
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 1.2e-130 471.1 592 47.3
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 6.7e-129 465.3 601 46.1
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 6.7e-129 465.3 598 46.3
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 1.9e-128 463.8 606 44.7
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 2.5e-128 463.4 582 46.0
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 1.3e-127 461.1 583 44.8
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 1.6e-127 460.7 583 44.8
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 4.8e-127 459.1 587 44.6
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 3.1e-126 456.4 581 44.6
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 3.1e-126 456.4 596 43.8
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 5.3e-126 455.7 593 45.4
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.5e-125 452.6 595 44.5
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 5.8e-125 452.2 597 45.6
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 6.5e-124 448.7 601 44.4
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 6.5e-124 448.7 561 45.5
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.5e-123 446.8 549 46.1
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 9.3e-123 444.9 590 45.3
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 2.3e-121 440.3 541 46.2
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.5e-120 437.6 557 45.1
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 1.5e-120 437.6 559 43.6
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 4.8e-119 432.6 581 42.2
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 6.3e-119 432.2 632 41.8
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 7.7e-117 425.2 619 43.3
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 1.0e-116 424.9 533 45.6
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.3e-116 424.5 597 42.7
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-116 424.5 619 43.3
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 1.1e-115 421.4 538 44.6
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 1.9e-115 420.6 595 42.0
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 1.4e-113 414.5 557 43.1
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.2e-111 407.1 502 46.0
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 3.7e-111 406.4 561 43.5
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 6.3e-111 405.6 501 46.1
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 1.8e-110 404.1 502 45.8
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 9.1e-110 401.7 544 42.8
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 1.5e-109 401.0 549 43.7
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.9e-108 396.7 495 46.3
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 6.5e-108 395.6 567 42.5
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 9.4e-107 391.7 500 44.8
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.6e-106 389.8 555 41.4
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 6.1e-106 389.0 502 45.2
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 7.9e-106 388.7 501 45.9
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.8e-105 387.5 592 39.4
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 5.1e-105 386.0 500 44.4
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 2.0e-104 384.0 565 41.2
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 2.6e-104 383.6 556 42.6
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 7.4e-104 382.1 513 42.7
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 9.7e-104 381.7 500 43.2
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 9.7e-104 381.7 569 39.2
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 1.7e-103 380.9 471 43.1
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.4e-99 367.9 218 85.3
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 4.2e-99 366.3 369 52.8
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 1.4e-89 334.7 518 39.8
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 6.8e-89 332.4 510 41.0
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.2e-88 331.6 539 39.3
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 2.6e-88 330.5 539 39.3
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 1.3e-87 328.2 508 39.6
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.8e-87 327.0 529 38.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 1.8e-86 324.3 542 39.1
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 5.3e-86 322.8 442 41.2
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 5.3e-86 322.8 486 38.5
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 4.5e-85 319.7 512 37.5
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 1.0e-84 318.5 531 37.9
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 5.0e-84 316.2 516 38.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 3.2e-83 313.5 526 38.0
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 5.5e-83 312.8 530 37.2
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 9.4e-83 312.0 521 38.2
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 2.7e-82 310.5 527 38.1
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 3.7e-79 300.1 531 37.1
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 5.9e-77 292.7 495 36.8
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 2.6e-64 250.8 374 39.0
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 3.4e-64 250.4 458 36.2
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 2.4e-62 244.2 365 42.7
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-60 238.4 354 41.0
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 6.6e-52 209.5 483 33.1
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 3.6e-50 203.8 447 32.2
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 6.8e-49 199.5 459 30.9
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 8.9e-49 199.1 289 41.2
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 7.1e-46 189.5 201 49.3
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.0e-44 185.7 360 34.4
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 1.3e-44 185.3 293 37.9
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 2.9e-39 167.5 172 54.1
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 6.4e-39 166.4 245 40.8
FvH4_5g29180 Fragaria vesca HOM05D004256 ORTHO05D005224 8.4e-39 166.0 92 90.2
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 1.2e-37 162.2 388 29.4
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 4.6e-37 160.2 364 32.1
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 1.3e-34 152.1 242 42.6
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-33 147.9 227 40.1
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.4e-33 147.9 227 40.1
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.2e-30 137.5 400 29.8
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 1.6e-29 135.2 214 39.3
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 1.1e-27 129.0 346 29.5
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 2.5e-27 127.9 156 51.9
VMungo0251G1407 Vigna mungo HOM05D004256 ORTHO05D005224 6.4e-23 113.2 84 61.9
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 5.4e-22 110.2 441 26.8
BcaC06g34131 Brassica carinata HOM05D004256 ORTHO05D005224 1.9e-19 101.7 128 42.2
BcaC08g44368 Brassica carinata HOM05D004256 ORTHO05D005224 7.4e-19 99.8 147 39.5
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 3.7e-18 97.4 46 95.7
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 3.1e-17 94.4 77 61.0
BcaC04g20971 Brassica carinata HOM05D004256 ORTHO05D005224 2.0e-16 91.7 147 36.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 2.5e-14 84.7 120 42.5
BcaC02g08729 Brassica carinata HOM05D004256 ORTHO05D021760 1.5e-11 75.5 91 44.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 1.5e-11 75.5 136 30.9
BolC1t01694H Brassica oleracea HOM05D004256 ORTHO05D021760 9.6e-11 72.8 91 42.9
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 3.7e-10 70.9 60 58.3
BcaC09g51040 Brassica carinata HOM05D004256 ORTHO05D005224 6.2e-10 70.1 73 49.3
BolC1t04773H Brassica oleracea HOM05D004256 ORTHO05D021760 6.2e-10 70.1 76 47.4
BcaC01g00450 Brassica carinata HOM05D004256 ORTHO05D032009 1.4e-09 68.9 74 47.3
C01p17580 Brassica napus HOM05D004256 ORTHO05D005224 1.8e-09 68.6 91 41.8
BolC6t37010H Brassica oleracea HOM05D004256 ORTHO05D005224 1.8e-09 68.6 117 36.8
C03p79980 Brassica napus HOM05D004256 ORTHO05D032009 4.1e-09 67.4 74 45.9
BolC3t20250H Brassica oleracea HOM05D004256 ORTHO05D032009 4.1e-09 67.4 74 45.9
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 3.4e-08 64.3 137 33.6
C03p36320 Brassica napus HOM05D004256 ORTHO05D021760 6.5e-07 60.1 75 41.3
BolC3t15944H Brassica oleracea HOM05D004256 ORTHO05D021760 6.5e-07 60.1 75 41.3
A09p29560 Brassica napus HOM05D004256 ORTHO05D005224 9.3e-06 56.2 117 33.3


User provided reference genes

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