Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 2.1e-230 802.0 395 100.0
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 4.4e-212 741.1 375 96.5
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 4.9e-203 711.1 367 95.1
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.1e-202 708.4 367 94.6
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-181 639.8 364 86.5
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.8e-172 607.8 356 83.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 9.3e-162 573.9 365 77.3
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 8.7e-160 567.4 370 75.9
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 4.2e-154 548.5 306 87.3
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 3.4e-148 528.9 361 71.5
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 4.5e-148 528.5 359 71.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 4.9e-147 525.0 361 72.3
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.6e-142 510.0 369 69.1
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 2.1e-142 509.6 358 68.7
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 4.8e-142 508.4 362 68.2
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.8e-142 508.4 356 67.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.4e-141 506.9 358 70.9
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 1.2e-140 503.8 356 68.0
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 1.3e-139 500.4 363 67.8
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.7e-139 500.0 361 68.1
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 1.7e-139 500.0 361 68.1
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 2.5e-138 496.1 360 68.9
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.6e-137 493.4 363 66.9
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.7e-137 492.7 362 66.3
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 3.5e-137 492.3 366 67.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 7.9e-137 491.1 360 66.4
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 3.9e-136 488.8 362 66.6
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 6.7e-136 488.0 364 67.3
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.1e-135 487.3 362 66.6
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.5e-135 486.9 361 65.4
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.3e-135 485.7 363 65.0
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 5.7e-135 485.0 363 65.6
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.7e-135 485.0 362 66.0
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.1e-133 480.7 365 65.5
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 2.4e-133 479.6 362 64.4
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 5.3e-133 478.4 362 65.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 1.2e-132 477.2 362 67.1
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 1.5e-132 476.9 362 65.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.5e-132 476.9 356 64.6
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 2.6e-132 476.1 333 69.1
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 4.5e-132 475.3 362 65.2
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 2.2e-131 473.0 362 63.5
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 2.2e-131 473.0 360 65.6
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.9e-131 472.6 357 63.3
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.8e-131 472.2 362 64.9
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 3.8e-131 472.2 361 61.5
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 3.8e-131 472.2 358 65.6
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 2.5e-130 469.5 360 63.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 3.6e-129 465.7 365 61.9
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 1.4e-128 463.8 359 60.7
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.3e-128 463.0 355 63.1
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 3.9e-128 462.2 364 63.2
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 6.7e-128 461.5 369 61.8
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 6.7e-128 461.5 484 52.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 3.3e-127 459.1 365 60.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 4.3e-127 458.8 358 62.8
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 1.7e-126 456.8 363 60.3
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.7e-126 456.8 356 61.8
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 1.7e-126 456.8 373 61.7
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 2.8e-126 456.1 363 63.6
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-125 454.1 355 63.1
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.8e-125 453.4 364 63.5
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 2.4e-125 453.0 363 60.3
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 3.1e-125 452.6 363 60.3
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.1e-125 452.2 355 61.4
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.1e-125 452.2 355 61.4
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 1.2e-124 450.7 366 61.7
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.2e-124 450.7 364 62.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.6e-124 449.5 410 54.1
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 7.7e-124 448.0 361 60.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 7.7e-124 448.0 370 59.5
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 1.0e-123 447.6 355 61.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 1.3e-123 447.2 364 60.4
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.7e-123 446.8 430 53.7
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.7e-123 446.8 329 66.3
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 2.2e-123 446.4 362 59.1
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.0e-123 445.3 362 59.7
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 5.0e-123 445.3 363 59.2
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 3.2e-122 442.6 362 59.1
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 4.2e-122 442.2 357 60.5
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 1.6e-121 440.3 428 53.0
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 6.1e-121 438.3 362 59.7
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 6.1e-121 438.3 362 59.7
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.8e-120 436.8 359 58.5
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.3e-120 436.4 363 58.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 5.1e-120 435.3 362 59.1
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 1.1e-119 434.1 359 60.2
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.5e-119 433.7 363 59.0
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.0e-119 433.3 363 59.2
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 2.0e-119 433.3 351 60.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 3.3e-119 432.6 363 57.3
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 1.2e-113 414.1 407 52.8
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.0e-113 411.4 355 57.2
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.8e-112 410.2 361 58.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.0e-111 406.8 301 65.1
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.3e-107 394.0 347 55.6
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 6.5e-107 391.7 356 56.5
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 1.1e-106 391.0 237 75.9
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.1e-105 386.7 362 55.8
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 6.1e-105 385.2 360 54.4
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 2.9e-99 366.3 358 55.0
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 3.8e-99 365.9 385 48.8
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 1.5e-98 364.0 358 51.1
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 4.2e-98 362.5 328 57.3
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 2.7e-97 359.8 356 53.9
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-95 353.6 251 68.9
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 1.7e-91 340.5 209 77.5
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 2.8e-89 333.2 296 57.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.3e-86 324.3 435 42.3
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.1e-85 319.7 282 57.1
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 2.8e-81 306.6 361 47.9
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 3.4e-79 299.7 207 67.1
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 3.4e-79 299.7 385 43.4
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.1e-77 294.7 414 39.9
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 2.3e-75 287.0 158 79.7
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.6e-73 280.8 360 41.4
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 8.9e-72 275.0 232 63.4
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 3.7e-62 243.0 133 82.7
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 4.1e-61 239.6 126 82.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 3.8e-54 216.5 261 46.7
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 3.8e-54 216.5 261 46.7
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 7.8e-44 182.2 191 51.8
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.9e-42 177.6 206 48.1
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 2.5e-42 177.2 207 47.8
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 6.2e-41 172.6 216 47.7
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 2.0e-39 167.5 131 54.2
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 2.0e-39 167.5 146 58.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 7.9e-28 129.0 76 80.3
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 6.2e-25 119.4 121 56.2
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.4e-21 108.2 123 51.2
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 2.5e-21 107.5 101 55.4
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 5.7e-18 96.3 197 31.5
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.8e-11 74.7 95 48.4


User provided reference genes

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