Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.4e-47 191.8 94 100.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.8e-32 141.7 100 76.0
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.4e-31 139.4 100 75.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.4e-31 139.4 100 75.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.8e-31 139.0 100 75.0
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 7.6e-30 133.7 100 72.0
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.2e-29 132.1 100 73.0
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 8.4e-29 130.2 100 68.0
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.9e-28 129.0 99 68.7
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.9e-28 129.0 127 60.6
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 2.5e-28 128.6 98 69.4
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.5e-28 128.6 96 70.8
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 4.2e-28 127.9 100 69.0
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 7.1e-28 127.1 97 69.1
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 9.3e-28 126.7 97 69.1
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 2.1e-27 125.6 97 69.1
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 2.7e-27 125.2 96 69.8
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 2.7e-27 125.2 96 69.8
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 3.5e-27 124.8 100 67.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.6e-27 124.4 97 68.0
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 6.0e-27 124.0 96 67.7
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 6.0e-27 124.0 98 67.3
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 7.9e-27 123.6 99 64.6
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 7.9e-27 123.6 98 66.3
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.0e-26 123.2 96 68.8
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.8e-26 122.5 97 67.0
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 2.3e-26 122.1 98 64.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.3e-26 122.1 98 66.3
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.0e-26 121.7 97 64.9
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 3.9e-26 121.3 96 66.7
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 3.9e-26 121.3 96 66.7
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 5.1e-26 120.9 91 68.1
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 5.1e-26 120.9 100 65.0
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 5.1e-26 120.9 97 66.0
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 6.7e-26 120.6 97 66.0
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 6.7e-26 120.6 96 65.6
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 8.7e-26 120.2 97 66.0
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 8.7e-26 120.2 98 64.3
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.1e-25 119.8 96 66.7
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.1e-25 119.8 97 66.0
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.1e-25 119.8 98 64.3
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 1.5e-25 119.4 90 68.9
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.5e-25 119.4 98 65.3
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.9e-25 119.0 96 64.6
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.9e-25 119.0 96 64.6
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.9e-25 119.0 91 67.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 3.3e-25 118.2 98 67.3
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 3.3e-25 118.2 97 63.9
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 3.3e-25 118.2 96 66.7
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 4.3e-25 117.9 91 67.0
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 4.3e-25 117.9 91 67.0
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 4.3e-25 117.9 97 66.0
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 5.6e-25 117.5 97 64.9
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 5.6e-25 117.5 97 64.9
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 5.6e-25 117.5 97 64.9
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 7.4e-25 117.1 97 63.9
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 9.6e-25 116.7 100 62.0
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.3e-24 116.3 90 66.7
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.6e-24 115.9 97 64.9
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 2.8e-24 115.2 100 62.0
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.8e-24 115.2 100 61.0
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 2.8e-24 115.2 100 61.0
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.7e-24 114.8 97 63.9
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.7e-24 114.8 97 61.9
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 3.7e-24 114.8 88 68.2
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 4.8e-24 114.4 99 60.6
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 4.8e-24 114.4 90 66.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 4.8e-24 114.4 90 66.7
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 6.2e-24 114.0 97 63.9
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 8.2e-24 113.6 87 67.8
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.1e-23 113.2 92 65.2
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.1e-23 113.2 100 61.0
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 1.4e-23 112.8 97 61.9
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 1.8e-23 112.5 100 61.0
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.4e-23 112.1 97 61.9
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.4e-23 112.1 108 59.3
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 5.3e-23 110.9 88 67.0
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 5.3e-23 110.9 97 61.9
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 5.3e-23 110.9 88 67.0
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 5.3e-23 110.9 97 61.9
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 5.3e-23 110.9 88 67.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 6.9e-23 110.5 100 62.0
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 6.9e-23 110.5 100 62.0
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 9.0e-23 110.2 95 58.9
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 9.0e-23 110.2 93 67.7
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.2e-22 109.8 93 61.3
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.5e-22 109.4 95 61.1
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 2.0e-22 109.0 97 59.8
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 2.6e-22 108.6 100 58.0
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 5.8e-22 107.5 100 59.0
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 7.6e-22 107.1 100 56.0
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.0e-21 106.7 96 58.3
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.7e-21 105.9 97 57.7
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 3.8e-21 104.8 105 59.0
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 3.8e-21 104.8 88 64.8
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 1.9e-20 102.4 92 59.8
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 4.2e-20 101.3 89 62.9
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.8e-18 95.9 60 78.3
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.8e-18 95.9 54 85.2
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.8e-18 95.9 90 54.4
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 8.7e-18 93.6 85 56.5
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 7.4e-17 90.5 51 84.3
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 7.4e-17 90.5 52 84.6
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.2e-16 89.0 55 78.2
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 2.2e-16 89.0 79 60.8
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 2.8e-16 88.6 51 84.3
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 1.1e-15 86.7 51 82.4
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 1.8e-15 85.9 81 58.0
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 2.4e-15 85.5 52 78.8
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 3.1e-15 85.1 64 64.1
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.1e-15 84.7 53 77.4
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 4.1e-15 84.7 45 88.9
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 4.1e-15 84.7 68 64.7
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 9.0e-15 83.6 75 61.3
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.0e-13 80.1 44 84.1
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 5.0e-13 77.8 52 69.2
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.1e-12 76.6 51 72.5
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 7.2e-12 73.9 90 48.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 9.4e-12 73.6 85 50.6
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 9.4e-12 73.6 85 50.6
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.2e-11 73.2 89 42.7
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 1.6e-11 72.8 77 51.9
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.0e-10 70.1 87 44.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.8e-10 69.3 92 45.7
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.0e-09 65.9 39 84.6
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.3e-08 63.2 90 40.0
FAN20G2981 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-06 55.1 33 84.8
Aa31LG10G1230 Aethionema arabicum HOM05D006077 ORTHO05D007499 5.9e-06 54.3 92 41.3
Aa31sc1971G10 Aethionema arabicum HOM05D006077 ORTHO05D007499 7.7e-06 53.9 92 41.3


User provided reference genes

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