Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1501.9 762 100.0
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1365.1 768 89.7
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 0.0e+00 1357.0 768 89.6
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 0.0e+00 1350.1 768 89.2
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 0.0e+00 1308.1 768 86.7
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 0.0e+00 1131.7 770 75.1
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 0.0e+00 1128.2 767 74.6
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 2.0e-293 1012.3 775 68.1
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.7e-293 1010.7 606 87.3
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 7.5e-285 983.8 777 67.3
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.5e-282 974.9 773 66.8
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 5.0e-281 971.1 772 65.4
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 3.3e-280 968.4 764 66.2
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.2e-279 966.5 774 64.7
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.4e-278 963.0 771 66.0
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 1.4e-278 963.0 770 65.5
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.2e-277 959.9 770 64.3
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 7.5e-277 957.2 767 65.2
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 9.8e-277 956.8 770 64.5
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 9.8e-277 956.8 768 64.8
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 2.2e-276 955.7 768 64.8
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.8e-275 952.6 764 65.1
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.4e-275 952.2 761 64.9
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 7.0e-275 950.7 767 65.2
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 3.5e-274 948.3 761 64.7
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.3e-272 941.8 768 64.2
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 2.3e-270 935.6 767 64.0
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 4.9e-268 927.9 768 63.8
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.7e-266 922.2 770 62.5
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.0e-265 920.2 748 64.2
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 5.0e-265 917.9 765 63.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 5.0e-265 917.9 768 61.1
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 3.6e-263 911.8 756 64.4
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.6e-263 911.8 756 64.4
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 4.7e-263 911.4 763 62.6
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 6.2e-263 911.0 745 64.2
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 2.3e-262 909.1 778 62.3
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.5e-261 906.4 761 62.5
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 1.5e-261 906.4 761 62.5
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.6e-261 905.6 756 63.4
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 5.8e-261 904.4 749 64.2
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.2e-260 902.5 756 63.9
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.4e-259 899.0 789 61.7
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 2.7e-258 895.6 758 62.9
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.7e-258 895.6 741 63.6
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 7.8e-258 894.0 775 62.1
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.0e-257 893.6 775 61.8
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.9e-256 889.4 778 61.4
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 5.6e-256 887.9 743 62.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.6e-256 887.9 739 64.1
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 8.1e-255 884.0 816 58.6
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.0e-253 879.4 774 61.0
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.6e-253 879.0 747 62.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.7e-252 876.3 755 60.8
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 3.8e-252 875.2 749 62.6
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.4e-251 872.5 762 61.2
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 5.4e-251 871.3 777 60.9
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 1.3e-249 866.7 793 59.6
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.3e-249 866.7 769 60.7
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.7e-249 866.3 768 59.5
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 2.0e-245 852.8 765 59.5
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 1.7e-244 849.7 1022 48.8
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 5.4e-243 844.7 764 58.8
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.6e-242 843.2 751 59.0
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 7.8e-242 840.9 789 57.3
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.6e-239 833.2 767 59.6
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 2.4e-238 829.3 751 58.7
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 6.9e-238 827.8 759 57.0
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 2.9e-236 822.4 728 60.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.9e-235 819.7 752 57.7
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.4e-235 819.3 783 56.3
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 3.2e-235 818.9 756 57.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 2.3e-233 812.8 759 57.6
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.7e-233 811.2 658 65.5
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 8.7e-233 810.8 759 57.3
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.9e-232 809.7 751 57.7
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 4.3e-232 808.5 748 58.2
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.1e-230 803.9 752 57.8
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.1e-230 803.9 749 57.8
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-230 802.7 739 57.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 6.9e-230 801.2 759 57.2
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 3.4e-229 798.9 976 49.0
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.5e-224 783.5 778 55.1
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.1e-223 779.6 733 57.8
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 1.2e-221 773.9 753 54.2
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 5.1e-217 758.4 875 50.1
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 2.5e-216 756.1 712 56.7
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 3.3e-216 755.7 658 60.8
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 3.7e-215 752.3 752 54.3
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.3e-212 743.8 754 54.8
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.9e-212 742.7 759 54.0
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 8.5e-212 741.1 746 54.0
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 4.2e-211 738.8 744 53.6
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 5.5e-211 738.4 774 51.3
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.8e-209 733.4 618 63.3
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 2.4e-206 723.0 775 50.8
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.3e-175 620.9 617 55.6
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.3e-172 610.1 519 61.8
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 2.1e-170 603.6 567 57.7
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 8.8e-169 598.2 731 46.2
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.2e-160 571.2 780 42.4
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 3.4e-160 569.7 782 43.4
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 7.8e-157 558.5 765 43.3
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-136 489.2 327 80.1
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 3.8e-135 486.5 395 63.0
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.6e-130 471.1 258 94.2
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.9e-124 449.9 294 81.0
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 9.6e-123 445.3 415 57.6
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.4e-111 406.0 665 39.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-103 382.1 461 46.2
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 2.5e-102 377.5 480 45.0
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.3e-102 375.6 480 45.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.7e-90 338.2 277 69.3
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.8e-90 337.4 746 33.4
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 3.2e-86 323.9 317 56.2
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 2.2e-82 311.2 232 70.3
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.3e-79 302.0 1028 25.7
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 1.6e-69 268.5 187 66.8
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 6.1e-69 266.5 160 76.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 7.7e-56 223.0 396 38.1
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.0e-52 212.6 292 39.7
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 4.9e-50 203.8 173 59.0
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.9e-46 191.8 740 25.8
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 4.0e-44 184.1 134 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 4.6e-40 170.6 176 50.6
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.3e-34 152.5 174 55.2
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.4e-33 147.1 243 39.1
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 1.4e-28 132.5 285 38.6
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 5.1e-23 114.0 122 55.7
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.0e-20 104.4 103 51.5
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.9e-20 103.2 107 50.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 2.6e-19 101.7 64 78.1
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 2.2e-18 98.6 220 31.8
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 4.0e-12 77.8 165 32.1
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 6.9e-12 77.0 64 53.1
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 2.2e-10 72.0 178 25.8
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.4e-09 68.6 155 27.7
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 4.6e-08 64.3 41 65.9
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.0e-07 63.2 111 29.7
SHI12859 Sapria himalayana HOM05D005074 ORTHO05D023363 5.1e-07 60.8 37 67.6
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-06 59.7 45 62.2
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.5e-06 58.5 194 31.4
Actinidia11567 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.6e-06 57.4 81 45.7


User provided reference genes

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