Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2606.2 1324 100.0
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2524.2 1324 95.9
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 2500.3 1324 95.3
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2496.5 1324 95.2
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 2481.1 1324 94.8
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 2364.3 1327 89.4
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 2155.2 1332 81.5
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 2099.3 1331 79.3
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1843.2 1341 70.2
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1829.3 1342 69.7
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1795.8 1345 68.8
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1768.1 1344 67.2
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1729.9 1349 64.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1729.1 1346 66.2
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1723.8 1346 65.2
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1719.9 1352 66.8
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1717.2 1348 65.4
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1695.6 1346 64.2
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1690.6 1345 65.7
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1674.8 1353 64.4
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1674.1 1339 64.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1674.1 1339 64.7
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1670.6 1396 60.9
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1664.0 1353 64.2
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1654.8 1341 63.7
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1647.5 1345 64.0
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1344 63.0
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1643.2 1300 64.0
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1639.8 1347 62.3
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1639.0 1382 62.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1632.1 1345 63.6
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1629.0 1333 63.0
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1628.2 1340 62.9
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1627.1 1338 62.9
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1625.1 1342 62.5
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1622.4 1342 62.9
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1622.4 1349 63.5
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1621.3 1350 62.1
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1619.0 1347 63.1
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1612.8 1342 62.4
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1610.5 1360 60.4
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1607.8 1259 64.6
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1607.8 1490 57.0
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1607.4 1341 62.3
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1599.3 1351 61.1
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1598.9 1350 61.4
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1598.9 1350 61.2
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1354 60.9
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1587.0 1354 61.5
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1585.9 1359 60.6
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1585.5 1231 65.1
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1582.8 1231 65.2
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1571.2 1352 61.0
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1567.7 1355 60.0
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1552.3 1358 60.0
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1544.6 1346 59.1
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1543.5 1340 60.5
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1543.1 1346 59.0
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1537.7 1358 59.1
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1535.0 1350 59.0
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1532.3 1351 60.1
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1521.5 1351 59.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1508.8 1357 58.5
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1506.1 1354 57.9
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1506.1 1347 57.9
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1504.2 1348 58.8
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1503.4 1335 58.4
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1499.2 1348 57.4
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1496.1 1348 59.6
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1494.9 1340 57.4
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1492.6 1344 58.0
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1463.7 1346 56.8
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1453.7 1338 57.4
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1449.1 1346 57.1
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1433.7 1343 56.4
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1411.4 1327 56.8
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1409.8 1341 56.7
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1409.4 1345 56.1
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1409.0 1327 56.7
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1401.3 1327 56.2
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1397.1 1327 56.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1397.1 1327 56.0
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1389.8 1345 56.4
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1360.9 1340 53.6
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1352.8 1327 53.7
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1351.3 1358 54.1
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1344.3 1279 54.7
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1262.3 1093 60.2
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1237.2 1342 49.7
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1234.2 1337 51.2
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1223.8 1348 50.5
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1204.1 1000 61.7
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1198.3 1001 62.4
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1188.3 886 66.7
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1187.2 1336 49.0
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1180.6 1355 47.9
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1117.4 1260 50.0
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1110.1 876 64.7
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.5e-285 986.9 1312 45.6
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 3.6e-274 949.1 1328 41.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.8e-246 857.1 1308 39.4
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 1.4e-230 804.3 1336 38.6
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 1.6e-229 800.8 1143 40.5
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 1.2e-226 791.2 1338 37.4
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.2e-221 774.6 953 46.2
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.0e-172 612.1 497 61.8
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.0e-164 583.9 573 51.8
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 2.2e-162 577.8 579 56.6
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.7e-122 445.3 1160 29.0
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.4e-108 399.1 324 63.0
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 2.6e-107 394.8 306 63.4
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 7.0e-97 360.1 322 55.0
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.5e-94 352.4 363 54.0
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.9e-90 338.2 1099 28.3
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 2.3e-79 302.0 259 62.5
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.5e-64 251.5 310 46.1
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.9e-63 248.1 205 62.0
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.0e-55 221.9 185 60.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 3.0e-55 221.9 234 52.6
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 5.6e-54 217.6 301 43.9
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.7e-46 191.0 151 64.2
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.0e-39 168.7 119 68.1
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 8.5e-34 150.6 128 64.8
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 4.8e-29 134.8 676 24.9
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.1e-24 119.4 137 46.7
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.5e-17 95.9 105 54.3
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.0e-14 86.3 88 44.3
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.2e-13 82.8 103 48.5
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.2e-09 68.6 65 58.5
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 5.2e-07 61.6 131 33.6
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 5.7e-06 58.2 47 59.6


User provided reference genes

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