Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0259 Fragaria x ananassa HOM05D000228 ORTHO05D001545 7.9e-28 126.3 61 100.0
FvH4_6g15630 Fragaria vesca HOM05D000228 ORTHO05D001545 4.1e-24 114.0 56 94.6
FAN14G3914 Fragaria x ananassa HOM05D000228 ORTHO05D001545 4.1e-24 114.0 56 94.6
RcHm_v2.0_Chr3g0469301 Rosa chinensis HOM05D000228 ORTHO05D001545 8.5e-22 106.3 53 94.3
RcHm_v2.0_Chr5g0061861 Rosa chinensis HOM05D000228 ORTHO05D001545 7.4e-18 93.2 51 84.3
FvH4_3g34290 Fragaria vesca HOM05D000228 ORTHO05D001545 1.1e-16 89.4 51 82.4
FAN11G3166 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.1e-16 89.4 51 82.4
FAN16G3688 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.1e-16 89.4 51 82.4
FAN21G2820 Fragaria x ananassa HOM05D000228 ORTHO05D001545 1.1e-16 89.4 51 82.4
Prupe.6G089600 Prunus persica HOM05D000228 ORTHO05D001545 1.7e-14 82.0 50 76.0
MD03G1106800 Malus domestica HOM05D000228 ORTHO05D001545 6.5e-14 80.1 50 78.0
Pp3c17_4860 Physcomitrium patens HOM05D000228 ORTHO05D001545 2.5e-13 78.2 59 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2196 Anthoceros agrestis HOM05D000228 ORTHO05D001545 4.2e-13 77.4 56 62.5
Mapoly0051s0017 Marchantia polymorpha HOM05D000228 ORTHO05D001545 9.4e-13 76.3 59 59.3
Migut.A00876 Erythranthe guttata HOM05D000228 ORTHO05D001545 2.1e-12 75.1 50 72.0
DCAR_018871 Daucus carota HOM05D000228 ORTHO05D001545 2.7e-12 74.7 51 70.6
GSVIVG01025079001 Vitis vinifera HOM05D000228 ORTHO05D001545 3.6e-12 74.3 60 61.7
TWI75G1460 Tripterygium wilfordii HOM05D000228 ORTHO05D001545 4.6e-12 73.9 59 62.7
ClCG03G002130 Citrullus lanatus HOM05D000228 ORTHO05D001545 6.1e-12 73.6 54 63.0
Potri.001G341900 Populus trichocarpa HOM05D000228 ORTHO05D001545 6.1e-12 73.6 60 60.0
SEGI_11035 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.0e-11 72.8 59 55.9
SEGI_11307 Sequoiadendron giganteum HOM05D000228 ORTHO05D001545 1.0e-11 72.8 59 55.9
MSTRG.17722 Avicennia marina HOM05D000228 ORTHO05D001545 1.4e-11 72.4 58 58.6
Cre03.g165750 Chlamydomonas reinhardtii HOM05D000228 ORTHO05D001545 1.4e-11 72.4 48 62.5
COL.COLO4_18403 Corchorus olitorius HOM05D000228 ORTHO05D001545 1.4e-11 72.4 47 74.5
PSO384G5084 Papaver somniferum HOM05D000228 ORTHO05D001545 1.4e-11 72.4 59 61.0
PSO699G0040 Papaver somniferum HOM05D000228 ORTHO05D001545 1.4e-11 72.4 59 61.0
CANSAT56G4454 Cannabis sativa HOM05D000228 ORTHO05D001545 1.8e-11 72.0 59 59.3
arahy.Tifrunner.gnm1.ann1.E1FMMY Arachis hypogaea HOM05D000228 ORTHO05D001545 2.3e-11 71.6 59 62.7
arahy.Tifrunner.gnm1.ann1.ZV3AQA Arachis hypogaea HOM05D000228 ORTHO05D001545 2.3e-11 71.6 59 62.7
CBR_g21008 Chara braunii HOM05D000228 ORTHO05D001545 2.3e-11 71.6 50 62.0
MELO3C026854.2 Cucumis melo HOM05D000228 ORTHO05D001545 2.3e-11 71.6 50 66.0
CsaV3_1G012790 Cucumis sativus L. HOM05D000228 ORTHO05D001545 2.3e-11 71.6 50 66.0
Sc19g0005360 Simmondsia chinensis HOM05D000228 ORTHO05D001545 2.3e-11 71.6 56 62.5
CSS0025979 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 3.0e-11 71.2 60 60.0
Migut.C00025 Erythranthe guttata HOM05D000228 ORTHO05D001545 3.0e-11 71.2 50 68.0
Ciclev10027681m.g Citrus clementina HOM05D000228 ORTHO05D001545 3.9e-11 70.9 59 57.6
HanXRQChr04g0106851 Helianthus annuus HOM05D000228 ORTHO05D001545 3.9e-11 70.9 51 66.7
Lj3C239T4 Lonicera japonica HOM05D000228 ORTHO05D001545 3.9e-11 70.9 51 64.7
Actinidia03765 Actinidia chinensis HOM05D000228 ORTHO05D001545 5.1e-11 70.5 60 58.3
CSS0035598 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D001545 5.1e-11 70.5 52 65.4
CAN.G1190.18 Capsicum annuum HOM05D000228 ORTHO05D001545 5.1e-11 70.5 47 72.3
MCO05G255 Micromonas commoda HOM05D000228 ORTHO05D001545 5.1e-11 70.5 48 64.6
Nn2g12369 Nelumbo nucifera HOM05D000228 ORTHO05D001545 5.1e-11 70.5 56 62.5
Nitab4.5_0001885g0030 Nicotiana tabacum HOM05D000228 ORTHO05D001545 5.1e-11 70.5 47 72.3
Cpa.g.sc7.208 Carica papaya HOM05D000228 ORTHO05D001545 6.7e-11 70.1 56 60.7
CiPaw.14G074800 Carya illinoinensis HOM05D000228 ORTHO05D001545 6.7e-11 70.1 50 66.0
Oeu041542.1 Olea europaea HOM05D000228 ORTHO05D001545 6.7e-11 70.1 47 72.3
Peaxi162Scf00616g00511 Petunia axillaris HOM05D000228 ORTHO05D001545 6.7e-11 70.1 47 70.2
Solyc11g072730.2 Solanum lycopersicum HOM05D000228 ORTHO05D001545 6.7e-11 70.1 50 66.0
Sopen11g030400 Solanum pennellii HOM05D000228 ORTHO05D001545 6.7e-11 70.1 50 66.0
Thecc.03G012000 Theobroma cacao HOM05D000228 ORTHO05D001545 6.7e-11 70.1 59 61.0
TAR623G0006 Trochodendron aralioides HOM05D000228 ORTHO05D001545 6.7e-11 70.1 59 59.3
Atru.chr3.3760 Acer truncatum HOM05D000228 ORTHO05D001545 8.8e-11 69.7 47 70.2
Aqoxy4G03124 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 8.8e-11 69.7 60 56.7
Cfa011405 Carpinus fangiana HOM05D000228 ORTHO05D001545 8.8e-11 69.7 47 70.2
Haze_23976 Corylus avellana HOM05D000228 ORTHO05D001545 8.8e-11 69.7 47 70.2
ECA247G0560 Erigeron canadensis HOM05D000228 ORTHO05D001545 8.8e-11 69.7 51 64.7
HanXRQChr08g0230641 Helianthus annuus HOM05D000228 ORTHO05D001545 8.8e-11 69.7 51 66.7
Lalb_Chr01g0003921 Lupinus albus HOM05D000228 ORTHO05D001545 1.1e-10 69.3 50 64.0
QL06p007429 Quercus lobata HOM05D000228 ORTHO05D001545 1.1e-10 69.3 47 72.3
Sed0007851 Sechium edule HOM05D000228 ORTHO05D001545 1.1e-10 69.3 47 68.1
PGSC0003DMG402025354 Solanum tuberosum HOM05D000228 ORTHO05D001545 1.1e-10 69.3 47 70.2
Cc01_g11950 Coffea canephora HOM05D000228 ORTHO05D001545 1.5e-10 68.9 50 66.0
Gohir.A03G036100 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.5e-10 68.9 59 57.6
Gohir.D03G132200 Gossypium hirsutum HOM05D000228 ORTHO05D001545 1.5e-10 68.9 59 57.6
Gorai.003G139100 Gossypium raimondii HOM05D000228 ORTHO05D001545 1.5e-10 68.9 59 57.6
PSO017G3640 Papaver somniferum HOM05D000228 ORTHO05D001545 1.5e-10 68.9 59 55.9
CARHR273660 Cardamine hirsuta HOM05D000228 ORTHO05D001545 2.0e-10 68.6 59 55.9
Thhalv10012446m.g Eutrema salsugineum HOM05D000228 ORTHO05D001545 2.0e-10 68.6 59 55.9
Nitab4.5_0004839g0020 Nicotiana tabacum HOM05D000228 ORTHO05D001545 2.0e-10 68.6 47 70.2
Rhsim01G0223300 Rhododendron simsii HOM05D000228 ORTHO05D001545 2.0e-10 68.6 54 63.0
Sabra16G0221600 Salix brachista HOM05D000228 ORTHO05D001545 2.0e-10 68.6 49 65.3
Aqoxy4G03122 Aquilegia oxysepala HOM05D000228 ORTHO05D001545 2.6e-10 68.2 60 53.3
AL8G36630 Arabidopsis lyrata HOM05D000228 ORTHO05D001545 2.6e-10 68.2 59 54.2
arahy.Tifrunner.gnm1.ann1.NH5KQA Arachis hypogaea HOM05D000228 ORTHO05D001545 2.6e-10 68.2 47 70.2
Carub.0008s2074 Capsella rubella HOM05D000228 ORTHO05D001545 2.6e-10 68.2 59 54.2
Dinv27602 Davidia involucrata HOM05D000228 ORTHO05D001545 2.6e-10 68.2 50 66.0
Manes.17G000400 Manihot esculenta HOM05D000228 ORTHO05D001545 3.3e-10 67.8 56 58.9
Peaxi162Scf00616g00621 Petunia axillaris HOM05D000228 ORTHO05D001545 3.3e-10 67.8 47 68.1
Sp6g21700 Schrenkiella parvula HOM05D000228 ORTHO05D001545 3.3e-10 67.8 59 54.2
SGA_v2.0_scaffold110G31200 Striga asiatica HOM05D000228 ORTHO05D001545 3.3e-10 67.8 49 61.2
AUR62006512 Chenopodium quinoa HOM05D000228 ORTHO05D001545 4.4e-10 67.4 56 57.1
AUR62025018 Chenopodium quinoa HOM05D000228 ORTHO05D001545 4.4e-10 67.4 51 60.8
Lsat_1_v5_gn_9_21100 Lactuca sativa HOM05D000228 ORTHO05D001545 4.4e-10 67.4 45 73.3
AT5G60040 Arabidopsis thaliana HOM05D000228 ORTHO05D001545 5.7e-10 67.0 59 54.2
CAN.G84.13 Capsicum annuum HOM05D000228 ORTHO05D001545 5.7e-10 67.0 47 70.2
BcaB05g22610 Brassica carinata HOM05D000228 ORTHO05D001545 9.7e-10 66.2 52 57.7
A02p06630 Brassica napus HOM05D000228 ORTHO05D001545 9.7e-10 66.2 52 57.7
BolC2t07289H Brassica oleracea HOM05D000228 ORTHO05D001545 9.7e-10 66.2 52 57.7
BraA02t05745Z Brassica rapa HOM05D000228 ORTHO05D001545 9.7e-10 66.2 52 57.7
Glyma.11G147317 Glycine max HOM05D000228 ORTHO05D001545 9.7e-10 66.2 50 68.0
Lsat_1_v5_gn_2_6980 Lactuca sativa HOM05D000228 ORTHO05D001545 9.7e-10 66.2 47 70.2
Nitab4.5_0001885g0040 Nicotiana tabacum HOM05D000228 ORTHO05D001545 9.7e-10 66.2 47 68.1
Phvul.011G070100 Phaseolus vulgaris HOM05D000228 ORTHO05D001545 9.7e-10 66.2 50 68.0
vmacro12980 Vaccinium macrocarpon HOM05D000228 ORTHO05D001545 9.7e-10 66.2 46 71.7
SHI43201 Sapria himalayana HOM05D000228 ORTHO05D001545 1.3e-09 65.9 48 62.5
Ah.04g153590 Amaranthus hybridus HOM05D000228 ORTHO05D001545 1.7e-09 65.5 54 53.7
CDE02G3052 Ceratophyllum demersum HOM05D000228 ORTHO05D001545 1.7e-09 65.5 59 54.2
ECA233G1127 Erigeron canadensis HOM05D000228 ORTHO05D001545 1.7e-09 65.5 50 58.0
THA.LOC104810826 Tarenaya hassleriana HOM05D000228 ORTHO05D001545 1.7e-09 65.5 59 50.8
Zm00001eb078830 Zea mays HOM05D000228 ORTHO05D001545 1.7e-09 65.5 54 57.4
Duzib150G0751 Durio zibethinus HOM05D000228 ORTHO05D001545 2.2e-09 65.1 50 64.0
Os04g0492300 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D001545 2.2e-09 65.1 54 57.4
VMungo1127G0038 Vigna mungo HOM05D000228 ORTHO05D001545 3.7e-09 64.3 47 70.2
PRCOL_00001662 Prasinoderma coloniale HOM05D000228 ORTHO05D001545 4.8e-09 63.9 46 60.9
Eucgr.J02108 Eucalyptus grandis HOM05D000228 ORTHO05D001545 6.3e-09 63.5 46 63.0
MD09G1157000 Malus domestica HOM05D000228 ORTHO05D001545 6.3e-09 63.5 45 57.8
PGR119G1503 Punica granatum HOM05D000228 ORTHO05D001545 6.3e-09 63.5 46 65.2
COL.COLO4_14804 Corchorus olitorius HOM05D000228 ORTHO05D001545 8.2e-09 63.2 59 52.5
Nitab4.5_0004015g0070 Nicotiana tabacum HOM05D000228 ORTHO05D001545 1.1e-08 62.8 43 72.1
HPP92_005962 Vanilla planifolia HOM05D000228 ORTHO05D001545 1.1e-08 62.8 57 50.9
Lj1g0011731 Lotus japonicus HOM05D000228 ORTHO05D001545 1.8e-08 62.0 50 62.0
Atru.chr3.3762 Acer truncatum HOM05D000228 ORTHO05D001545 2.4e-08 61.6 59 54.2
EL10Ac3g06609 Beta vulgaris HOM05D000228 ORTHO05D001545 2.4e-08 61.6 47 59.6
EL10Ac1g02243 Beta vulgaris HOM05D000228 ORTHO05D001545 5.3e-08 60.5 47 59.6
AUR62035701 Chenopodium quinoa HOM05D000228 ORTHO05D001545 5.3e-08 60.5 57 49.1
ATR0594G163 Amborella trichopoda HOM05D000228 ORTHO05D001545 6.9e-08 60.1 47 61.7
Aa31LG1G12170 Aethionema arabicum HOM05D000228 ORTHO05D001545 9.1e-08 59.7 56 50.0
Aa31LG1G12200 Aethionema arabicum HOM05D000228 ORTHO05D001545 2.0e-07 58.5 54 50.0
Medtr4g061700 Medicago truncatula HOM05D000228 ORTHO05D001545 2.0e-07 58.5 59 52.5
Medtr4g061800 Medicago truncatula HOM05D000228 ORTHO05D001545 3.4e-07 57.8 50 56.0
TPR.G2993 Trifolium pratense HOM05D000228 ORTHO05D001545 3.4e-07 57.8 50 54.0
Ca_19216_v3 Cicer arietinum L. HOM05D000228 ORTHO05D001545 1.0e-06 56.2 50 52.0
vmacro14494 Vaccinium macrocarpon HOM05D005596 ORTHO05D001545 1.3e-06 55.8 39 71.8
Cfa021868 Carpinus fangiana HOM05D000228 ORTHO05D001545 1.7e-06 55.5 44 61.4
Psat7g221400 Pisum sativum HOM05D000228 ORTHO05D001545 2.2e-06 55.1 50 52.0
Haze_26119 Corylus avellana HOM05D000228 ORTHO05D001545 5.0e-06 53.9 44 63.6


User provided reference genes

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