Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0192 Fragaria x ananassa HOM05D003266 ORTHO05D003718 9.1e-142 506.9 258 100.0
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 7.4e-136 487.3 258 96.5
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.3e-135 486.5 258 96.5
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 1.7e-119 433.0 265 86.0
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 4.1e-94 348.6 263 73.0
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 9.2e-94 347.4 272 72.4
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 2.5e-91 339.3 261 73.2
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 1.2e-88 330.5 262 70.2
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 1.3e-87 327.0 262 69.8
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 4.9e-87 325.1 266 68.0
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 1.9e-83 313.2 264 67.4
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 4.3e-83 312.0 272 67.3
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.2e-82 310.5 279 63.8
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 2.1e-82 309.7 270 65.6
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 3.6e-82 308.9 268 66.4
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 1.1e-81 307.4 258 65.1
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 2.4e-81 306.2 266 66.9
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 8.9e-81 304.3 271 65.7
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 2.6e-80 302.8 265 66.8
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 5.8e-80 301.6 277 62.8
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 9.9e-80 300.8 268 66.4
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.7e-79 300.1 271 64.6
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 1.7e-79 300.1 271 64.6
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 2.9e-79 299.3 274 62.8
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 2.9e-79 299.3 271 64.6
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 6.4e-79 298.1 257 63.4
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 1.4e-78 297.0 268 64.2
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.4e-78 296.2 291 60.8
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 2.4e-78 296.2 263 63.1
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 2.4e-78 296.2 270 63.7
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 3.2e-78 295.8 227 70.5
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 4.2e-78 295.4 261 65.1
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 5.4e-78 295.0 275 61.8
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 7.1e-78 294.7 227 70.0
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 9.3e-78 294.3 181 81.2
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 1.2e-77 293.9 260 66.2
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.2e-77 293.9 259 65.6
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.6e-77 293.5 264 65.5
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 2.7e-77 292.7 274 62.4
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 2.7e-77 292.7 264 65.5
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 3.5e-77 292.4 268 62.3
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 4.6e-77 292.0 263 65.0
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.0e-76 290.8 188 77.1
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.0e-76 290.8 256 64.1
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 1.7e-76 290.0 234 66.7
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 1.7e-76 290.0 261 62.8
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 3.0e-76 289.3 237 65.4
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 3.0e-76 289.3 272 60.3
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 3.9e-76 288.9 271 62.4
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 3.9e-76 288.9 264 65.2
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 8.7e-76 287.7 264 62.5
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 1.5e-75 287.0 191 75.9
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.5e-75 287.0 279 62.4
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 1.5e-75 287.0 267 61.4
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 1.9e-75 286.6 274 63.1
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 2.5e-75 286.2 256 63.3
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.5e-75 286.2 188 75.0
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 4.3e-75 285.4 269 61.3
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 5.6e-75 285.0 276 63.0
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.6e-74 283.5 259 62.2
CDE05G0524 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 2.8e-74 282.7 279 60.2
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 2.8e-74 282.7 269 61.7
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 2.8e-74 282.7 257 60.7
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 2.8e-74 282.7 241 63.1
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 3.6e-74 282.3 278 61.9
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 4.8e-74 282.0 194 73.7
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 4.8e-74 282.0 275 60.0
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 1.1e-73 280.8 187 73.8
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 1.8e-73 280.0 267 61.0
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 2.4e-73 279.6 188 75.5
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 2.4e-73 279.6 271 59.0
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 2.4e-73 279.6 266 60.9
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 3.1e-73 279.3 262 60.3
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 3.1e-73 279.3 244 64.3
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 5.3e-73 278.5 253 60.5
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 5.3e-73 278.5 222 67.6
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 6.9e-73 278.1 273 59.3
COL.COLO4_30471 Corchorus olitorius HOM05D003266 ORTHO05D003718 6.9e-73 278.1 272 62.5
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.2e-72 277.3 264 58.7
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.5e-72 276.9 265 58.5
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.5e-72 276.9 190 75.3
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 3.4e-72 275.8 284 59.5
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 4.4e-72 275.4 189 75.7
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 7.6e-72 274.6 189 73.0
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.3e-71 273.9 236 64.4
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 1.3e-71 273.9 266 60.5
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 2.9e-71 272.7 271 60.9
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 4.9e-71 271.9 181 74.0
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 6.4e-71 271.6 186 74.7
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 1.4e-70 270.4 184 72.3
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 7.1e-70 268.1 287 57.1
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 9.3e-70 267.7 308 55.5
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.2e-69 267.3 187 71.7
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 1.6e-69 266.9 257 58.8
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 2.1e-69 266.5 267 58.1
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 2.3e-68 263.1 256 59.4
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 6.6e-68 261.5 300 55.3
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.5e-67 260.4 242 61.2
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 1.5e-67 260.4 278 56.8
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 1.9e-67 260.0 182 71.4
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 1.3e-66 257.3 187 72.7
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 6.2e-66 255.0 233 62.2
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 2.4e-65 253.1 225 60.9
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 5.3e-65 251.9 260 57.3
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 5.3e-65 251.9 223 64.1
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 5.3e-65 251.9 223 64.1
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 1.2e-64 250.8 356 45.8
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 1.5e-64 250.4 210 65.7
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 2.0e-64 250.0 148 79.7
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 6.4e-63 245.0 210 64.8
Os01g0232300 Oryza sativa ssp. japonica HOM05D003266 ORTHO05D003718 1.2e-61 240.7 183 66.7
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 6.7e-60 235.0 231 55.4
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 1.5e-59 233.8 188 62.8
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 4.3e-59 232.3 222 60.8
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 6.9e-57 224.9 190 61.1
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 2.6e-56 223.0 426 38.5
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 2.9e-55 219.5 171 65.5
Sopen00g008370 Solanum pennellii HOM05D003266 ORTHO05D003718 1.4e-54 217.2 140 78.6
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 7.1e-54 214.9 199 59.3
AUR62032707 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.7e-53 213.0 284 50.0
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 6.0e-53 211.8 171 64.9
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 1.8e-52 210.3 180 61.1
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 1.5e-51 207.2 210 52.4
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 4.3e-51 205.7 190 59.5
DCAR_026337 Daucus carota HOM05D003266 ORTHO05D003718 3.1e-49 199.5 188 57.4
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 4.1e-49 199.1 175 56.6
Peaxi162Scf00034g00317 Petunia axillaris HOM05D003266 ORTHO05D003718 1.5e-48 197.2 188 59.0
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 1.5e-48 197.2 180 61.1
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 3.4e-48 196.1 180 59.4
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 5.9e-48 195.3 154 63.0
CAN.G438.41 Capsicum annuum HOM05D003266 ORTHO05D003718 1.0e-47 194.5 283 48.1
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 1.9e-46 190.3 190 55.3
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 1.6e-45 187.2 190 52.6
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 1.6e-45 187.2 184 60.3
HanXRQChr16g0501281 Helianthus annuus HOM05D003266 ORTHO05D003718 2.3e-44 183.3 165 58.2
unitig_748.g8094 Utricularia gibba HOM05D003266 ORTHO05D003718 2.3e-44 183.3 112 80.4
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.2e-40 171.0 190 53.2
Solyc12g044370.3 Solanum lycopersicum HOM05D003266 ORTHO05D003718 1.2e-40 171.0 140 65.7
Gohir.A01G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 2.0e-40 170.2 141 64.5
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 7.7e-40 168.3 161 56.5
SMO134G0187 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 1.1e-38 164.5 153 53.6
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 1.9e-38 163.7 108 68.5
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.5e-38 163.3 149 60.4
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 3.2e-38 162.9 149 60.4
COL.COLO4_22674 Corchorus olitorius HOM05D003266 ORTHO05D003718 7.2e-38 161.8 133 63.9
SHI11014 Sapria himalayana HOM05D003266 ORTHO05D003718 7.2e-38 161.8 144 59.0
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 3.6e-37 159.5 172 52.9
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 7.9e-37 158.3 168 53.6
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 1.4e-36 157.5 167 53.3
Nitab4.5_0003039g0050 Nicotiana tabacum HOM05D003266 ORTHO05D003718 2.2e-34 150.2 122 63.9
CAN.G394.131 Capsicum annuum HOM05D003266 ORTHO05D003718 3.1e-33 146.4 144 54.2
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 2.0e-32 143.7 207 45.4
SMO201G0121 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 2.3e-28 130.2 146 48.6
COL.COLO4_08423 Corchorus olitorius HOM05D003266 ORTHO05D003718 2.2e-26 123.6 145 50.3
Aqoxy7G01499 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 1.9e-22 110.5 74 67.6
HPP92_023819 Vanilla planifolia HOM05D000814 ORTHO05D001161 1.9e-22 110.5 138 48.6
Nitab4.5_0001147g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 4.7e-21 105.9 125 48.0
PRCOL_00000971 Prasinoderma coloniale HOM05D003266 ORTHO05D003718 1.7e-18 97.4 126 42.9
Nn2g11636 Nelumbo nucifera HOM05D003266 ORTHO05D003718 2.8e-18 96.7 69 65.2
AagrBONN_evm.TU.Sc2ySwM_344.2120 Anthoceros agrestis HOM05D003266 ORTHO05D003718 1.2e-16 91.3 49 83.7
BcaB02g10013 Brassica carinata HOM05D003266 ORTHO05D003718 1.6e-16 90.9 87 57.5
Cre01.g039900 Chlamydomonas reinhardtii HOM05D003266 ORTHO05D003718 5.0e-15 85.9 132 35.6
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 1.4e-12 77.8 66 59.1
Prupe.7G044400 Prunus persica HOM05D003266 ORTHO05D037429 5.9e-08 62.4 32 87.5
Peaxi162Scf00772g00039 Petunia axillaris HOM05D003266 ORTHO05D003718 7.7e-08 62.0 43 65.1
PSO384G4173 Papaver somniferum HOM05D003266 ORTHO05D003718 2.9e-07 60.1 74 52.7
unitig_748.g8095 Utricularia gibba HOM05D003266 ORTHO05D003718 3.2e-06 56.6 52 53.8


User provided reference genes

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