Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g17060 Fragaria vesca HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN01G1288 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN03G2913 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN06G2526 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN06G3186 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN10G2808 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
FAN10G3748 Fragaria x ananassa HOM05D006029 ORTHO05D007439 5.6e-64 247.3 112 100.0
RcHm_v2.0_Chr1g0360471 Rosa chinensis HOM05D006029 ORTHO05D007439 6.9e-62 240.4 112 95.5
MD01G1085300 Malus domestica HOM05D006029 ORTHO05D007439 5.9e-45 184.1 112 69.6
Prupe.2G192900 Prunus persica HOM05D006029 ORTHO05D007439 3.8e-44 181.4 112 68.8
Glyma.18G179600 Glycine max HOM05D006029 ORTHO05D007439 4.5e-37 157.9 108 63.9
Lalb_Chr04g0261421 Lupinus albus HOM05D006029 ORTHO05D007439 1.1e-35 153.3 108 63.0
ClCG10G013250 Citrullus lanatus HOM05D006029 ORTHO05D007439 2.5e-35 152.1 108 60.2
Glyma.07G131200 Glycine max HOM05D006029 ORTHO05D007439 5.5e-35 151.0 108 62.0
Phvul.008G101000 Phaseolus vulgaris HOM05D006029 ORTHO05D007439 1.2e-34 149.8 108 63.0
CANSAT56G3403 Cannabis sativa HOM05D006029 ORTHO05D007439 2.7e-34 148.7 108 59.3
MELO3C026899.2 Cucumis melo HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
CsaV3_3G043380 Cucumis sativus L. HOM05D006029 ORTHO05D007439 1.0e-33 146.7 108 58.3
arahy.Tifrunner.gnm1.ann1.A8XVJK Arachis hypogaea HOM05D006029 ORTHO05D007439 2.3e-33 145.6 108 57.4
arahy.Tifrunner.gnm1.ann1.ZU3BRN Arachis hypogaea HOM05D006029 ORTHO05D007439 2.3e-33 145.6 108 57.4
Sed0019070 Sechium edule HOM05D006029 ORTHO05D007439 2.3e-33 145.6 108 57.4
CiPaw.02G042300 Carya illinoinensis HOM05D006029 ORTHO05D007439 5.1e-33 144.4 110 55.5
Cfa010653 Carpinus fangiana HOM05D006029 ORTHO05D007439 1.1e-32 143.3 110 53.6
Rhsim01G0175700 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.5e-32 142.9 108 57.4
vmacro12594 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 1.5e-32 142.9 108 57.4
Lj1g0014790 Lotus japonicus HOM05D006029 ORTHO05D007439 7.4e-32 140.6 108 55.6
Lj1g0022243 Lotus japonicus HOM05D006029 ORTHO05D007439 7.4e-32 140.6 108 55.6
TWI36G0126 Tripterygium wilfordii HOM05D006029 ORTHO05D007439 2.2e-31 139.0 108 53.7
Sed0007850 Sechium edule HOM05D006029 ORTHO05D007439 2.8e-31 138.7 108 56.5
GSVIVG01027190001 Vitis vinifera HOM05D006029 ORTHO05D007439 8.2e-31 137.1 108 54.6
Ciclev10022957m.g Citrus clementina HOM05D006029 ORTHO05D007439 1.8e-30 136.0 108 56.5
Psat3g005240 Pisum sativum HOM05D006029 ORTHO05D007439 9.1e-30 133.7 108 54.6
Oeu043218.1 Olea europaea HOM05D006029 ORTHO05D007439 2.0e-29 132.5 108 55.6
Solyc05g055890.3 Solanum lycopersicum HOM05D006029 ORTHO05D007439 2.0e-29 132.5 108 53.7
Sopen05g034290 Solanum pennellii HOM05D006029 ORTHO05D007439 2.0e-29 132.5 108 53.7
Peaxi162Scf00156g00617 Petunia axillaris HOM05D006029 ORTHO05D007439 3.4e-29 131.7 108 51.9
Cc06_g21100 Coffea canephora HOM05D006029 ORTHO05D007439 5.9e-29 131.0 109 55.0
Cc00_g02440 Coffea canephora HOM05D006029 ORTHO05D007439 7.7e-29 130.6 109 55.0
Gohir.D08G145300 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 109 54.1
Gohir.D12G270400 Gossypium hirsutum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 109 54.1
Gorai.008G290700 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.0e-28 130.2 109 54.1
PGSC0003DMG402023468 Solanum tuberosum HOM05D006029 ORTHO05D007439 1.0e-28 130.2 108 51.9
Gorai.004G150300 Gossypium raimondii HOM05D006029 ORTHO05D007439 1.3e-28 129.8 109 54.1
Hma1.2p1_1482F.1_g286210 Hydrangea macrophylla HOM05D006029 ORTHO05D007439 1.3e-28 129.8 108 50.9
COL.COLO4_06245 Corchorus olitorius HOM05D006029 ORTHO05D007439 2.2e-28 129.0 109 52.3
CAN.G694.9 Capsicum annuum HOM05D006029 ORTHO05D007439 2.9e-28 128.6 108 50.9
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 2.9e-28 128.6 108 52.8
TAR374G1259 Trochodendron aralioides HOM05D006029 ORTHO05D007439 5.0e-28 127.9 108 52.8
Gohir.A08G124200 Gossypium hirsutum HOM05D006029 ORTHO05D007439 6.5e-28 127.5 109 53.2
unitig_60.g25801 Utricularia gibba HOM05D006029 ORTHO05D007439 6.5e-28 127.5 110 53.6
Eucgr.E03439 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 51.4
Eucgr.E03441 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 51.4
Eucgr.E03442 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 51.4
Eucgr.L01751 Eucalyptus grandis HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 51.4
Potri.012G015900 Populus trichocarpa HOM05D006029 ORTHO05D007439 8.5e-28 127.1 109 53.2
Peaxi162Scf00740g00556 Petunia axillaris HOM05D006029 ORTHO05D007439 1.1e-27 126.7 101 53.5
HanXRQChr05g0130881 Helianthus annuus HOM05D006029 ORTHO05D007439 1.4e-27 126.3 109 53.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 1.9e-27 125.9 97 54.6
Gohir.A12G269900 Gossypium hirsutum HOM05D006029 ORTHO05D007439 4.2e-27 124.8 109 52.3
Lsat_1_v5_gn_4_30800 Lactuca sativa HOM05D006029 ORTHO05D007439 4.2e-27 124.8 109 53.2
PGR102G2016 Punica granatum HOM05D006029 ORTHO05D007439 5.5e-27 124.4 109 49.5
TPR.G4810 Trifolium pratense HOM05D006029 ORTHO05D007439 5.5e-27 124.4 107 49.5
Manes.01G243500 Manihot esculenta HOM05D006029 ORTHO05D007439 9.4e-27 123.6 109 50.5
Sabra12G0016400 Salix brachista HOM05D006029 ORTHO05D007439 1.2e-26 123.2 109 52.3
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 2.1e-26 122.5 113 49.6
MSTRG.17362 Avicennia marina HOM05D006029 ORTHO05D007439 2.7e-26 122.1 111 54.1
AL1G11270 Arabidopsis lyrata HOM05D006029 ORTHO05D007439 3.6e-26 121.7 107 49.5
AT4G07950 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 6.1e-26 120.9 107 49.5
Lj3g0023283 Lotus japonicus HOM05D006029 ORTHO05D007439 6.1e-26 120.9 108 47.2
Carub.0003s3000 Capsella rubella HOM05D006029 ORTHO05D007439 8.0e-26 120.6 107 49.5
CARHR001260 Cardamine hirsuta HOM05D006029 ORTHO05D007439 1.0e-25 120.2 107 49.5
Duzib138G0795 Durio zibethinus HOM05D006029 ORTHO05D007439 1.0e-25 120.2 109 50.5
Thhalv10009170m.g Eutrema salsugineum HOM05D006029 ORTHO05D007439 2.3e-25 119.0 107 47.7
Medtr7g116750 Medicago truncatula HOM05D006029 ORTHO05D007439 2.3e-25 119.0 114 46.5
Thecc.01G338500 Theobroma cacao HOM05D006029 ORTHO05D007439 3.0e-25 118.6 111 51.4
HPP92_017871 Vanilla planifolia HOM05D006029 ORTHO05D007439 3.9e-25 118.2 110 49.1
AT1G01210 Arabidopsis thaliana HOM05D006029 ORTHO05D007439 6.7e-25 117.5 107 47.7
Nn1g00349 Nelumbo nucifera HOM05D006029 ORTHO05D007439 1.5e-24 116.3 109 50.5
BraA09t39405Z Brassica rapa HOM05D006029 ORTHO05D007439 5.7e-24 114.4 107 44.9
CSS0011460 Camellia sinensis var. sinensis HOM05D006029 ORTHO05D007439 7.4e-24 114.0 87 56.3
BcaC07g42429 Brassica carinata HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
A03p11160 Brassica napus HOM05D000069 ORTHO05D021930 9.7e-24 113.6 107 44.9
A09p39050 Brassica napus HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
A09p68990 Brassica napus HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
BolC3t13750H Brassica oleracea HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
BolC8t52870H Brassica oleracea HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
BraA03t10431Z Brassica rapa HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
BraA09t42236Z Brassica rapa HOM05D006029 ORTHO05D007439 9.7e-24 113.6 107 44.9
Cpa.g.sc96.66 Carica papaya HOM05D006029 ORTHO05D007439 1.3e-23 113.2 108 48.1
Sc02g0002910 Simmondsia chinensis HOM05D006029 ORTHO05D007439 2.2e-23 112.5 108 45.4
Sp1g01080 Schrenkiella parvula HOM05D006029 ORTHO05D007439 2.8e-23 112.1 107 45.8
THA.LOC104815886 Tarenaya hassleriana HOM05D006029 ORTHO05D007439 2.8e-23 112.1 107 44.9
EL10Ac5g10924 Beta vulgaris HOM05D006029 ORTHO05D007439 4.8e-23 111.3 107 47.7
C03p12870 Brassica napus HOM05D006029 ORTHO05D007439 8.2e-23 110.5 107 43.9
HanXRQChr17g0563271 Helianthus annuus HOM05D006029 ORTHO05D007439 8.2e-23 110.5 100 52.0
Haze_15690 Corylus avellana HOM05D006029 ORTHO05D007439 4.1e-22 108.2 81 53.1
Lsat_1_v5_gn_7_7741 Lactuca sativa HOM05D006029 ORTHO05D007439 4.1e-22 108.2 99 53.5
SGA_v2.0_scaffold22G09953 Striga asiatica HOM05D006029 ORTHO05D007439 7.0e-22 107.5 109 50.5
Migut.B01899 Erythranthe guttata HOM05D006029 ORTHO05D007439 1.2e-21 106.7 112 48.2
Os02g0672700 Oryza sativa ssp. japonica HOM05D006029 ORTHO05D007439 1.6e-21 106.3 109 45.9
PSO782G1905 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-21 105.9 109 46.8
PSO782G2649 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-21 105.9 109 46.8
PSO782G4464 Papaver somniferum HOM05D006029 ORTHO05D007439 2.0e-21 105.9 109 46.8
Hund17067 Selenicereus undatus HOM05D006029 ORTHO05D007439 3.5e-21 105.1 107 45.8
PSO170G0977 Papaver somniferum HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 46.8
Zm00001eb187060 Zea mays HOM05D006029 ORTHO05D007439 4.5e-21 104.8 109 46.8
Aa31LG1G10580 Aethionema arabicum HOM05D006029 ORTHO05D007439 1.7e-20 102.8 107 43.9
Nitab4.5_0000476g0280 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.7e-20 102.8 85 49.4
Pp3c15_5550 Physcomitrium patens HOM05D006029 ORTHO05D007439 6.5e-20 100.9 109 45.9
Lsat_1_v5_gn_6_63820 Lactuca sativa HOM05D006029 ORTHO05D007439 1.2e-18 96.7 135 41.5
Aqoxy4G03109 Aquilegia oxysepala HOM05D006029 ORTHO05D007439 1.6e-18 96.3 109 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3630 Anthoceros agrestis HOM05D006029 ORTHO05D007439 1.4e-17 93.2 109 39.4
QL08p046069 Quercus lobata HOM05D006029 ORTHO05D007439 3.3e-16 88.6 68 54.4
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 4.4e-16 88.2 66 57.6
Nitab4.5_0009816g0020 Nicotiana tabacum HOM05D006029 ORTHO05D007439 1.7e-15 86.3 74 48.6
Lsat_1_v5_gn_6_81300 Lactuca sativa HOM05D006029 ORTHO05D007439 2.2e-15 85.9 70 54.3
Cre02.g102400 Chlamydomonas reinhardtii HOM05D006029 ORTHO05D007439 1.4e-14 83.2 107 38.3
Atru.chr5.715 Acer truncatum HOM05D006029 ORTHO05D007439 1.2e-13 80.1 69 52.2
vmacro23448 Vaccinium macrocarpon HOM05D006029 ORTHO05D007439 4.5e-13 78.2 63 55.6
Rhsim07G0002100 Rhododendron simsii HOM05D006029 ORTHO05D007439 1.3e-12 76.6 69 47.8
Cc08_g08090 Coffea canephora HOM05D006029 ORTHO05D007439 1.7e-12 76.3 55 58.2
Ca_09543_v3 Cicer arietinum L. HOM05D006029 ORTHO05D007439 3.6e-10 68.6 68 50.0
Carub.0003s3001 Capsella rubella HOM05D003869 ORTHO05D004718 1.4e-09 66.6 66 42.4
PRCOL_00000799 Prasinoderma coloniale HOM05D006029 ORTHO05D007439 6.3e-07 57.8 89 37.1
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.1e-06 57.0 115 33.9
BcaC04g21057 Brassica carinata HOM05D004365 ORTHO05D005123 3.1e-06 55.5 115 29.6
C09p36150 Brassica napus HOM05D004365 ORTHO05D005123 5.4e-06 54.7 115 29.6
BolC9t56454H Brassica oleracea HOM05D004365 ORTHO05D005123 5.4e-06 54.7 115 29.6
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 7.0e-06 54.3 126 29.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 9.1e-06 53.9 101 30.7
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 9.1e-06 53.9 125 30.4


User provided reference genes

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