Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0466 Fragaria x ananassa HOM05D000142 ORTHO05D008397 6.8e-51 203.8 107 100.0
FAN01G1726 Fragaria x ananassa HOM05D000142 ORTHO05D008397 3.3e-45 184.9 99 97.0
FvH4_7g00530 Fragaria vesca HOM05D000142 ORTHO05D008397 4.7e-44 181.0 99 94.9
FAN06G2501 Fragaria x ananassa HOM05D000142 ORTHO05D008397 4.7e-44 181.0 99 94.9
FAN10G3986 Fragaria x ananassa HOM05D000142 ORTHO05D008397 1.4e-43 179.5 99 93.9
FAN03G0216 Fragaria x ananassa HOM05D000142 ORTHO05D008397 1.8e-43 179.1 99 93.9
RcHm_v2.0_Chr1g0314321 Rosa chinensis HOM05D000142 ORTHO05D008397 3.2e-32 141.7 102 79.4
MD02G1316800 Malus domestica HOM05D000142 ORTHO05D008397 1.5e-26 122.9 108 69.4
MD07G1005200 Malus domestica HOM05D000142 ORTHO05D008397 1.1e-24 116.7 108 67.6
Prupe.2G007400 Prunus persica HOM05D000142 ORTHO05D008397 1.1e-24 116.7 108 68.5
Cfa010727 Carpinus fangiana HOM05D000142 ORTHO05D008397 1.4e-16 89.7 110 55.5
Haze_03246 Corylus avellana HOM05D000142 ORTHO05D008397 1.4e-16 89.7 110 56.4
QL04p004780 Quercus lobata HOM05D000142 ORTHO05D008397 1.9e-16 89.4 109 56.9
Atru.chr11.2667 Acer truncatum HOM05D000142 ORTHO05D008397 6.0e-15 84.3 93 52.7
Migut.B01337 Erythranthe guttata HOM05D000142 ORTHO05D008397 6.0e-15 84.3 103 54.4
Sed0018745 Sechium edule HOM05D000142 ORTHO05D008397 6.0e-15 84.3 105 48.6
Manes.10G148200 Manihot esculenta HOM05D000142 ORTHO05D008397 1.0e-14 83.6 111 51.4
Dinv00377 Davidia involucrata HOM05D000142 ORTHO05D008397 1.3e-14 83.2 112 50.9
Dinv43474 Davidia involucrata HOM05D000142 ORTHO05D008397 1.3e-14 83.2 112 50.9
Actinidia32325 Actinidia chinensis HOM05D000142 ORTHO05D008397 1.8e-14 82.8 111 52.3
Atru.chr9.917 Acer truncatum HOM05D001331 ORTHO05D008397 2.3e-14 82.4 96 54.2
CANSAT11G0698 Cannabis sativa HOM05D000142 ORTHO05D008397 6.7e-14 80.9 109 50.5
Potri.009G065900 Populus trichocarpa HOM05D000142 ORTHO05D008397 6.7e-14 80.9 94 53.2
Thecc.01G415000 Theobroma cacao HOM05D000142 ORTHO05D008397 1.5e-13 79.7 111 51.4
SGA_v2.0_scaffold4G02245 Striga asiatica HOM05D000142 ORTHO05D008397 2.5e-13 79.0 97 55.7
Actinidia31689 Actinidia chinensis HOM05D000142 ORTHO05D008397 3.3e-13 78.6 111 51.4
Aqoxy1G00186 Aquilegia oxysepala HOM05D000142 ORTHO05D008397 7.4e-13 77.4 55 74.5
Duzib138G1004 Durio zibethinus HOM05D000142 ORTHO05D008397 1.3e-12 76.6 110 50.9
Sabra09G0049000 Salix brachista HOM05D000142 ORTHO05D008397 2.1e-12 75.9 110 49.1
Dinv43909 Davidia involucrata HOM05D000142 ORTHO05D008397 2.8e-12 75.5 113 46.9
Lj9A628T63 Lonicera japonica HOM05D000142 ORTHO05D008397 3.7e-12 75.1 95 49.5
Nn7g36057 Nelumbo nucifera HOM05D000142 ORTHO05D008397 3.7e-12 75.1 109 45.9
ClCG09G003870 Citrullus lanatus HOM05D000142 ORTHO05D008397 4.8e-12 74.7 111 43.2
CsaV3_7G031350 Cucumis sativus L. HOM05D000142 ORTHO05D008397 4.8e-12 74.7 106 45.3
Gohir.D05G253000 Gossypium hirsutum HOM05D000142 ORTHO05D008397 8.2e-12 73.9 100 49.0
Gohir.A05G250800 Gossypium hirsutum HOM05D000142 ORTHO05D008397 1.1e-11 73.6 100 49.0
Hma1.2p1_1745F.1_g300250 Hydrangea macrophylla HOM05D000142 ORTHO05D008397 1.1e-11 73.6 117 46.2
CARHR161890 Cardamine hirsuta HOM05D000142 ORTHO05D008397 1.4e-11 73.2 113 44.2
MSTRG.17058 Avicennia marina HOM05D000142 ORTHO05D008397 1.8e-11 72.8 65 63.1
CSS0002289 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 1.8e-11 72.8 114 46.5
Ciclev10032498m.g Citrus clementina HOM05D000142 ORTHO05D008397 1.8e-11 72.8 98 44.9
MELO3C023523.2 Cucumis melo HOM05D000142 ORTHO05D008397 1.8e-11 72.8 106 44.3
Gorai.009G264000 Gossypium raimondii HOM05D000142 ORTHO05D008397 1.8e-11 72.8 65 61.5
Cc02_g27390 Coffea canephora HOM05D000142 ORTHO05D008397 2.4e-11 72.4 108 49.1
Nitab4.5_0000050g0020 Nicotiana tabacum HOM05D000142 ORTHO05D008397 2.4e-11 72.4 100 49.0
arahy.Tifrunner.gnm1.ann1.HME85M Arachis hypogaea HOM05D000142 ORTHO05D008397 3.1e-11 72.0 104 48.1
COL.COLO4_23905 Corchorus olitorius HOM05D001331 ORTHO05D008397 3.1e-11 72.0 114 45.6
Glyma.15G271200 Glycine max HOM05D000142 ORTHO05D008397 3.1e-11 72.0 105 47.6
HanXRQChr16g0519651 Helianthus annuus HOM05D000142 ORTHO05D008397 3.1e-11 72.0 114 46.5
TAR623G1428 Trochodendron aralioides HOM05D000142 ORTHO05D008397 3.1e-11 72.0 55 67.3
GSVIVG01032039001 Vitis vinifera HOM05D000142 ORTHO05D008397 3.1e-11 72.0 101 47.5
AL5G32720 Arabidopsis lyrata HOM05D000142 ORTHO05D008397 4.0e-11 71.6 109 45.9
Oeu047543.1 Olea europaea HOM05D000142 ORTHO05D008397 5.3e-11 71.2 56 67.9
Psat0s2674g0040 Pisum sativum HOM05D000142 ORTHO05D008397 6.9e-11 70.9 96 49.0
arahy.Tifrunner.gnm1.ann1.XZ4G98 Arachis hypogaea HOM05D000142 ORTHO05D008397 9.0e-11 70.5 110 46.4
CSS0037404 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 9.0e-11 70.5 52 73.1
Peaxi162Scf00672g00514 Petunia axillaris HOM05D000142 ORTHO05D008397 9.0e-11 70.5 103 42.7
VMungo1080G1903 Vigna mungo HOM05D000142 ORTHO05D008397 9.0e-11 70.5 103 46.6
CSS0030322 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 1.2e-10 70.1 57 68.4
AT3G52150 Arabidopsis thaliana HOM05D000142 ORTHO05D008397 1.5e-10 69.7 109 45.0
Lsat_1_v5_gn_4_46280 Lactuca sativa HOM05D000142 ORTHO05D008397 1.5e-10 69.7 115 44.3
THA.LOC104823023 Tarenaya hassleriana HOM05D000142 ORTHO05D008397 1.5e-10 69.7 105 39.0
Carub.0005s1850 Capsella rubella HOM05D000142 ORTHO05D008397 2.6e-10 68.9 110 43.6
Rhsim07G0053300 Rhododendron simsii HOM05D000142 ORTHO05D008397 2.6e-10 68.9 114 47.4
CSS0028593 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 3.4e-10 68.6 57 66.7
Phvul.005G039000 Phaseolus vulgaris HOM05D000142 ORTHO05D008397 4.5e-10 68.2 103 45.6
DCAR_015684 Daucus carota HOM05D000142 ORTHO05D008397 5.8e-10 67.8 107 43.9
Glyma.08G151700 Glycine max HOM05D000142 ORTHO05D008397 5.8e-10 67.8 65 61.5
PSO384G2168 Papaver somniferum HOM05D000142 ORTHO05D008397 5.8e-10 67.8 70 52.9
TWI73G0088 Tripterygium wilfordii HOM05D000142 ORTHO05D008397 5.8e-10 67.8 113 47.8
Nitab4.5_0002012g0030 Nicotiana tabacum HOM05D000142 ORTHO05D008397 7.6e-10 67.4 114 46.5
vmacro13641 Vaccinium macrocarpon HOM05D000142 ORTHO05D008397 7.6e-10 67.4 115 46.1
MBI04_g27130_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D008397 1.0e-09 67.0 55 61.8
Sp5g10130 Schrenkiella parvula HOM05D000142 ORTHO05D008397 1.0e-09 67.0 112 41.1
Thhalv10010649m.g Eutrema salsugineum HOM05D000142 ORTHO05D008397 1.3e-09 66.6 113 41.6
PSO339G3016 Papaver somniferum HOM05D000142 ORTHO05D008397 1.3e-09 66.6 110 41.8
Aa31LG10G7240 Aethionema arabicum HOM05D000142 ORTHO05D008397 1.7e-09 66.2 107 38.3
HanXRQChr17g0563441 Helianthus annuus HOM05D000142 ORTHO05D008397 2.2e-09 65.9 100 46.0
ECA234G4106 Erigeron canadensis HOM05D000142 ORTHO05D008397 2.9e-09 65.5 108 42.6
Lalb_Chr25g0283261 Lupinus albus HOM05D000142 ORTHO05D008397 2.9e-09 65.5 114 37.7
Ah.13g078000 Amaranthus hybridus HOM05D000142 ORTHO05D008397 3.8e-09 65.1 105 44.8
BolC8t50359H Brassica oleracea HOM05D000142 ORTHO05D008397 3.8e-09 65.1 105 41.0
Medtr3g027140 Medicago truncatula HOM05D000142 ORTHO05D008397 6.5e-09 64.3 96 45.8
A09p45210 Brassica napus HOM05D000142 ORTHO05D008397 8.4e-09 63.9 105 40.0
A09p45220 Brassica napus HOM05D000142 ORTHO05D008397 8.4e-09 63.9 105 40.0
unitig_578.g16699 Utricularia gibba HOM05D000142 ORTHO05D008397 8.4e-09 63.9 101 47.5
C08p27420 Brassica napus HOM05D000142 ORTHO05D008397 1.1e-08 63.5 105 40.0
BraA09t39986Z Brassica rapa HOM05D000142 ORTHO05D008397 1.1e-08 63.5 105 40.0
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.4e-08 63.2 102 46.1
Lj3g0022647 Lotus japonicus HOM05D000142 ORTHO05D008397 1.4e-08 63.2 105 44.8
Hund19004 Selenicereus undatus HOM05D000142 ORTHO05D008397 1.9e-08 62.8 121 35.5
Hund11639 Selenicereus undatus HOM05D000142 ORTHO05D008397 2.5e-08 62.4 123 38.2
TPR.G12168 Trifolium pratense HOM05D000142 ORTHO05D008397 2.5e-08 62.4 53 60.4
A04p07210 Brassica napus HOM05D000142 ORTHO05D008397 3.2e-08 62.0 47 61.7
BraA04t16416Z Brassica rapa HOM05D000142 ORTHO05D008397 3.2e-08 62.0 47 61.7
HanXRQChr01g0017491 Helianthus annuus HOM05D000142 ORTHO05D008397 3.2e-08 62.0 97 45.4
MSTRG.20609 Avicennia marina HOM05D000142 ORTHO05D008397 4.2e-08 61.6 44 68.2
EL10Ac3g07461 Beta vulgaris HOM05D000142 ORTHO05D008397 4.2e-08 61.6 108 39.8
A09p45240 Brassica napus HOM05D000142 ORTHO05D008397 4.2e-08 61.6 47 57.4
C04p40770 Brassica napus HOM05D000142 ORTHO05D008397 4.2e-08 61.6 47 61.7
BolC4t25661H Brassica oleracea HOM05D000142 ORTHO05D008397 4.2e-08 61.6 47 61.7
Ca_03215_v3 Cicer arietinum L. HOM05D000142 ORTHO05D008397 4.2e-08 61.6 80 46.2
ATR0716G117 Amborella trichopoda HOM05D000142 ORTHO05D008397 9.3e-08 60.5 55 54.5
BraA09t39984Z Brassica rapa HOM05D000142 ORTHO05D008397 9.3e-08 60.5 105 38.1
Lsat_1_v5_gn_2_1121 Lactuca sativa HOM05D000142 ORTHO05D008397 9.3e-08 60.5 43 65.1
Eucgr.J01250 Eucalyptus grandis HOM05D000142 ORTHO05D008397 1.2e-07 60.1 34 82.4
TPR.G931 Trifolium pratense HOM05D000142 ORTHO05D008397 1.2e-07 60.1 50 62.0
Zm00001eb308420 Zea mays HOM05D000142 ORTHO05D008397 7.9e-07 57.4 103 39.8
CDE10G0444 Ceratophyllum demersum HOM05D000142 ORTHO05D008397 1.8e-06 56.2 100 36.0
HPP92_027956 Vanilla planifolia HOM05D000142 ORTHO05D008397 2.3e-06 55.8 109 37.6
BcaC02g09275 Brassica carinata HOM05D000142 ORTHO05D008397 5.1e-06 54.7 53 49.1


User provided reference genes

Program Settings