Gene: COL.COLO4_23905

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_23905
  • Transcript Identifier COL.rna22645
  • Gene Type Coding gene
  • Location AWUE01018372.1 : 22998-29817 : positive

Gene Family Information

  • ID HOM05D001331
  • #Genes/#Species 472/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna22645
  • GenBank OMO80847.1
  • id gene23877
  • gene_name COLO4_23905
  • uniprot A0A1R3IE24

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010029
ISO
PLAZA Integrative Orthologyregulation of seed germination AT3G52150
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G52150
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G52150
GO:0000278
ISO
PLAZA Integrative Orthologymitotic cell cycle AT3G59550
GO:0080148
ISO
PLAZA Integrative Orthologynegative regulation of response to water deprivation AT3G52150
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G59550
GO:1901001
ISO
PLAZA Integrative Orthologynegative regulation of response to salt stress AT3G52150
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis AT3G59550
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G52150
GO:1900140
ISO
PLAZA Integrative Orthologyregulation of seedling development AT3G52150
GO:0007062
ISO
PLAZA Homology (enrichment)sister chromatid cohesion HOM05D001331

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G52150
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT3G52150
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008278
ISO
PLAZA Homology (enrichment)cohesin complex HOM05D001331
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G52150
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT3G52150
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT3G52150
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT3G59550
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT3G52150
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G52150

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006910 Rad21/Rec8-like protein, N-terminal
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
Mapman id Description
13.3.4.1.3 Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1
17.7.2.2.22 Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP2