Gene: AT3G52150

General Information

Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 33 (TAIR:AT3G52380.1); Has 994423 Blast hits to 498842 proteins in 22080 species: Archae - 21562; Bacteria - 603611; Metazoa - 187119; Fungi - 27426; Plants - 59617; Viruses - 70898; Other Eukaryotes - 24190 (source: NCBI BLink).

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:1901259	IBA	Gene Ontology	chloroplast rRNA processing	1
GO:0009409	IMP, IEP	Gene Ontology	response to cold	2
GO:0009414	IEP	Gene Ontology	response to water deprivation	2
GO:0009651	IEP	Gene Ontology	response to salt stress	2
GO:0010029	IMP	Gene Ontology	regulation of seed germination	2
GO:0080148	IMP	Gene Ontology	negative regulation of response to water deprivation	2
GO:1900140	IMP	Gene Ontology	regulation of seedling development	2
GO:1901001	IMP	Gene Ontology	negative regulation of response to salt stress	2

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003729	IDA IBA	Gene Ontology	mRNA binding	1 3
GO:0003723	IEA	GOA Database	RNA binding
GO:0003723	IDA	Gene Ontology	RNA binding	2
GO:0003677	IEA	GOA Database	DNA binding
GO:0019843	IEA	GOA Database	rRNA binding
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003697	IDA	Gene Ontology	single-stranded DNA binding	2

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009579	IDA	GOA Database	thylakoid
GO:0009579	HDA	Gene Ontology	thylakoid	4
GO:0009535	IDA	GOA Database	chloroplast thylakoid membrane
GO:0009535	HDA IBA	Gene Ontology	chloroplast thylakoid membrane	1 5
GO:0009507	IEA	GOA Database	chloroplast
GO:0009507	IDA, HDA ISM	Gene Ontology	chloroplast	6 7
GO:0009570	IDA	GOA Database	chloroplast stroma
GO:0009570	HDA	Gene Ontology	chloroplast stroma	8
GO:0009941	IDA	GOA Database	chloroplast envelope
GO:0009941	HDA	Gene Ontology	chloroplast envelope	9
GO:0005829	HDA	Gene Ontology	cytosol	10
GO:0009536	IEA	GOA Database	plastid
GO:0005840	IEA	GOA Database	ribosome

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain

Mapman id	Description
17.7.2.2.22	Protein biosynthesis.organelle machinery.plastidial ribosome.small ribosomal subunit proteome.component psPSRP2