Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.9e-119 430.6 214 100.0
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 6.9e-119 430.6 214 100.0
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 2.0e-78 296.2 181 82.3
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 5.9e-78 294.7 178 79.2
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 5.9e-78 294.7 173 85.5
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 1.0e-77 293.9 161 88.8
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.1e-76 290.4 159 87.4
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-76 290.0 210 71.4
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.9e-76 289.7 176 82.4
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 1.9e-76 289.7 168 86.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.9e-76 289.7 175 81.1
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.5e-76 289.3 170 85.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.2e-76 288.9 206 73.3
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 4.2e-76 288.5 178 79.8
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 5.5e-76 288.1 145 91.7
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.5e-76 288.1 206 71.4
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.5e-76 288.1 219 68.5
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 5.5e-76 288.1 168 85.1
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 7.2e-76 287.7 182 78.0
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 9.4e-76 287.3 184 79.9
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 9.4e-76 287.3 206 71.4
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 9.4e-76 287.3 161 85.1
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 9.4e-76 287.3 146 90.4
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.2e-75 287.0 184 77.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.2e-75 287.0 207 71.5
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.2e-75 287.0 147 91.2
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.2e-75 287.0 208 73.1
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.2e-75 287.0 208 73.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.1e-75 286.2 206 71.8
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.1e-75 286.2 162 88.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.7e-75 285.8 182 78.6
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 2.7e-75 285.8 144 91.0
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 2.7e-75 285.8 191 77.0
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 3.6e-75 285.4 144 91.0
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 4.7e-75 285.0 201 75.1
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 6.1e-75 284.6 188 77.1
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 6.1e-75 284.6 204 73.5
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 6.1e-75 284.6 207 70.5
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 7.9e-75 284.3 201 70.6
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 7.9e-75 284.3 144 90.3
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.0e-74 283.9 168 83.9
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.4e-74 283.5 193 76.7
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-74 283.5 208 72.6
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 1.4e-74 283.5 174 78.7
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.8e-74 283.1 186 75.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 1.8e-74 283.1 165 84.8
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 3.0e-74 282.3 199 71.4
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 3.9e-74 282.0 214 69.2
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 5.1e-74 281.6 162 84.0
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 5.1e-74 281.6 196 73.5
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 6.7e-74 281.2 179 78.2
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 6.7e-74 281.2 187 75.9
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 6.7e-74 281.2 182 78.0
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.8e-74 280.8 140 93.6
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 8.8e-74 280.8 140 93.6
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 8.8e-74 280.8 140 93.6
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 8.8e-74 280.8 164 82.9
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 1.1e-73 280.4 161 83.9
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.1e-73 280.4 145 91.0
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.5e-73 280.0 204 72.5
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.6e-73 279.3 140 92.9
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 2.6e-73 279.3 170 82.9
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 2.6e-73 279.3 212 69.3
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 2.6e-73 279.3 142 90.8
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 3.3e-73 278.9 145 91.0
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.3e-73 278.9 142 90.1
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 4.4e-73 278.5 182 77.5
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.4e-73 278.5 198 71.2
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 4.4e-73 278.5 142 92.3
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 7.4e-73 277.7 175 78.9
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 9.7e-73 277.3 140 92.9
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 9.7e-73 277.3 140 92.9
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 9.7e-73 277.3 204 71.1
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.3e-72 276.9 161 84.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.7e-72 276.6 186 74.2
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 1.7e-72 276.6 170 81.8
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 1.7e-72 276.6 171 78.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 2.2e-72 276.2 203 70.9
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.7e-72 275.4 203 70.4
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 4.8e-72 275.0 142 90.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 4.8e-72 275.0 215 70.7
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 6.3e-72 274.6 183 77.6
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.2e-72 274.2 145 89.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 8.2e-72 274.2 160 82.5
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.1e-71 273.9 142 88.7
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 1.1e-71 273.9 169 79.9
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.1e-71 273.9 179 73.7
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.8e-71 273.1 185 75.1
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.4e-71 272.7 176 74.4
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.4e-71 272.7 191 71.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 2.4e-71 272.7 176 73.9
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 3.1e-71 272.3 183 74.3
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.1e-71 272.3 178 77.0
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.2e-70 270.4 147 84.4
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-70 270.0 200 71.0
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.6e-70 270.0 200 71.0
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 2.0e-70 269.6 200 71.0
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.6e-70 269.2 147 84.4
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 2.6e-70 269.2 214 65.4
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 3.5e-70 268.9 186 73.1
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 4.5e-70 268.5 140 87.1
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 4.5e-70 268.5 175 77.1
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.0e-69 267.3 167 79.0
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.3e-69 266.9 199 69.3
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.3e-69 266.9 173 75.7
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-68 263.8 142 87.3
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.5e-68 262.7 144 82.6
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.2e-67 260.4 138 87.0
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 6.1e-67 258.1 167 73.7
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 7.5e-65 251.1 138 80.4
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.7e-62 242.7 207 63.3
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.5e-60 236.9 183 67.2
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 1.5e-60 236.9 146 74.7
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 1.2e-57 227.3 138 71.7
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.4e-57 225.3 165 70.3
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.2e-56 223.0 161 70.8
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 2.4e-55 219.5 180 61.1
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 9.1e-55 217.6 144 74.3
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.5e-54 215.7 190 61.1
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 3.2e-52 209.1 169 64.5
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 7.5e-49 198.0 112 82.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.9e-48 195.3 108 84.3
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.5e-46 188.7 100 88.0
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 2.1e-43 179.9 154 64.9
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.6e-43 179.1 144 66.7
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 4.0e-42 175.6 143 64.3
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 1.7e-40 170.2 120 70.8
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.6e-35 152.5 90 83.3
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.5e-33 144.8 107 71.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.2e-30 137.5 81 79.0
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-30 137.5 81 79.0
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 1.1e-28 131.0 134 43.3
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.7e-24 117.1 101 60.4
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.0e-21 106.3 60 85.0
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 1.4e-18 97.4 56 80.4
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 5.8e-17 92.0 109 52.3
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 7.6e-17 91.7 53 81.1
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.8e-16 89.4 49 85.7
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 8.4e-16 88.2 49 81.6
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.0e-13 79.7 53 69.8
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.9e-10 68.6 42 73.8
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 2.0e-09 67.0 47 66.0
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 9.9e-09 64.7 70 51.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 2.9e-08 63.2 28 92.9
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 2.9e-08 63.2 28 92.9
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 6.0e-06 55.5 69 44.9


User provided reference genes

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