Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1110.5 545 100.0
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 5.3e-309 1063.5 566 94.2
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.7e-296 1020.0 568 89.6
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.7e-296 1020.0 568 89.6
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 2.0e-295 1018.5 563 89.9
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 2.0e-295 1018.5 568 89.4
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 2.6e-295 1018.1 562 89.9
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 3.3e-295 1017.7 568 89.3
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 4.4e-295 1017.3 562 89.9
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 7.5e-295 1016.5 562 89.9
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 7.5e-295 1016.5 561 90.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.7e-295 1016.1 562 89.7
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 1.3e-294 1015.8 566 89.4
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 2.2e-294 1015.0 564 89.2
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 4.8e-294 1013.8 565 89.2
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.1e-293 1012.7 564 89.5
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.4e-293 1012.3 562 89.3
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 1.4e-293 1012.3 565 89.6
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.8e-293 1011.9 561 89.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 1.8e-293 1011.9 562 89.0
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.2e-292 1009.2 561 88.9
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 2.0e-292 1008.4 559 89.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.5e-292 1007.7 564 88.8
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 5.9e-292 1006.9 563 88.6
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 7.7e-292 1006.5 561 88.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 1.0e-291 1006.1 564 88.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.7e-291 1005.4 561 87.9
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-291 1005.4 564 88.5
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.2e-291 1005.0 564 87.9
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.9e-291 1004.6 562 88.3
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 2.9e-291 1004.6 561 88.8
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 2.9e-291 1004.6 566 88.5
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 2.9e-291 1004.6 564 88.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 3.8e-291 1004.2 561 88.2
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 3.8e-291 1004.2 561 88.2
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 5.0e-291 1003.8 565 88.7
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.5e-291 1003.4 563 88.5
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 8.5e-291 1003.0 564 87.8
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-290 1002.7 564 88.7
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.5e-290 1002.3 561 87.7
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 2.5e-290 1001.5 564 88.1
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 3.2e-290 1001.1 561 88.4
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 9.4e-290 999.6 558 88.5
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 1.6e-289 998.8 561 88.2
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.1e-289 998.4 558 88.4
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.7e-289 998.0 594 84.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.7e-289 998.0 561 88.4
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 6.1e-289 996.9 564 87.6
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 8.0e-289 996.5 564 88.1
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 8.0e-289 996.5 564 87.9
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 8.0e-289 996.5 561 87.5
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.4e-288 995.7 557 88.9
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.4e-288 995.7 558 88.0
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.8e-288 995.3 564 87.1
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 5.2e-288 993.8 561 87.5
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 8.8e-288 993.0 564 86.7
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 8.8e-288 993.0 561 88.4
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 8.8e-288 993.0 562 88.1
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 1.2e-287 992.6 579 85.3
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.7e-286 988.8 564 86.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 2.2e-286 988.4 561 87.5
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.7e-286 987.6 564 86.2
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 3.7e-286 987.6 564 86.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 3.7e-286 987.6 600 83.2
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 3.7e-286 987.6 565 86.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.8e-286 987.3 564 86.0
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 8.3e-286 986.5 565 86.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.4e-285 984.9 561 86.6
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.4e-285 984.9 564 85.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.4e-285 984.9 564 85.6
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.0e-284 981.9 563 86.1
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 2.0e-284 981.9 564 85.5
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 2.0e-284 981.9 564 85.5
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 2.7e-284 981.5 561 87.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 4.5e-284 980.7 564 86.2
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 7.7e-284 979.9 559 85.2
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.3e-283 979.2 618 80.3
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 1.7e-283 978.8 564 86.0
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 2.5e-282 974.9 565 85.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 4.2e-282 974.2 561 85.2
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 5.5e-282 973.8 566 86.2
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 7.2e-282 973.4 553 87.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.1e-281 971.8 561 86.8
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 2.3e-280 968.4 552 87.3
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.3e-280 968.4 566 85.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 7.5e-279 963.4 561 85.4
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.4e-277 958.4 577 84.1
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 7.0e-277 956.8 591 81.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 5.9e-276 953.7 555 83.4
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 2.1e-273 945.3 521 89.3
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.4e-271 937.6 556 82.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-271 936.8 557 82.0
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.5e-271 936.8 557 82.0
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 4.9e-270 934.1 539 84.0
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.0e-260 902.1 521 85.2
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.9e-254 880.9 487 87.9
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.9e-251 871.3 493 87.4
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 1.6e-244 849.4 454 91.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 4.7e-241 837.8 542 75.3
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.4e-240 836.3 564 76.1
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.9e-234 815.8 509 81.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.9e-226 789.3 543 72.4
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.8e-225 785.4 546 74.4
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 5.8e-223 777.7 405 92.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 7.9e-220 767.3 420 90.7
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.5e-218 763.1 560 72.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 9.7e-210 733.8 546 70.7
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.1e-208 730.3 515 73.8
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.6e-207 725.7 515 73.4
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.4e-205 719.9 545 70.6
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.1e-200 703.7 388 88.9
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-198 697.2 506 69.8
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 3.6e-196 688.7 564 66.1
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 8.8e-195 684.1 560 64.5
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 4.0e-179 632.1 329 92.7
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.5e-170 603.6 503 65.2
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 8.6e-158 561.2 313 85.9
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.4e-136 488.8 444 59.2
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.2e-135 487.6 262 90.5
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 2.3e-134 483.4 508 55.3
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.6e-130 468.4 549 51.4
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.1e-127 460.3 299 77.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.0e-126 458.0 293 78.5
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 5.6e-125 452.2 550 50.4
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-120 435.6 364 64.6
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.5e-119 433.0 490 52.4
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 1.5e-117 427.6 259 84.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 6.4e-113 412.1 547 47.0
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-112 410.6 483 50.1
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 3.9e-110 402.9 350 61.7
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.7e-108 396.4 198 93.9
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.6e-103 379.4 238 82.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 6.7e-94 349.0 285 67.7
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.3e-93 346.7 167 98.8
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.4e-91 341.3 242 71.9
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 6.9e-91 339.0 183 85.8
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-88 329.7 306 61.4
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 5.7e-85 319.3 154 96.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.7e-85 319.3 269 63.2
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.1e-83 312.0 214 72.9
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.5e-73 278.9 160 83.8
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 4.7e-71 273.1 156 85.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.6e-63 248.1 165 75.8
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 9.7e-61 238.8 148 79.7
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.1e-56 225.3 140 80.7
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 1.7e-49 201.4 105 93.3
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 4.0e-46 190.3 264 46.2
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.2e-46 189.9 119 79.0
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 1.3e-44 185.3 122 76.2
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 6.1e-39 166.4 105 80.0
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.4e-38 165.2 125 67.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 3.1e-30 137.5 152 53.9
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 6.8e-30 136.3 81 84.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 7.8e-26 122.9 73 84.9
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.9e-24 118.2 71 84.5
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 3.3e-24 117.5 86 74.4
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.2e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.1e-19 100.5 58 84.5
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.3e-16 90.5 52 84.6
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.2e-15 89.0 88 61.4
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-15 88.6 51 80.4
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.6e-15 87.4 49 85.7
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.0e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 3.8e-12 77.4 60 70.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 5.4e-11 73.6 60 66.7
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-10 71.2 32 93.8
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 3.3e-08 64.3 54 66.7


User provided reference genes

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