Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01168 Eucalyptus grandis HOM05D000246 ORTHO05D007179 1.6e-106 389.4 199 100.0
Eucgr.F00584 Eucalyptus grandis HOM05D000246 ORTHO05D007179 6.3e-58 228.0 134 86.6
PGR031G3950 Punica granatum HOM05D000246 ORTHO05D007179 1.1e-54 217.2 203 57.1
Eucgr.L01167 Eucalyptus grandis HOM05D000246 ORTHO05D007179 1.9e-54 216.5 132 82.6
Atru.chr2.19 Acer truncatum HOM05D000246 ORTHO05D007179 2.6e-48 196.1 205 51.7
Gohir.D11G277100 Gossypium hirsutum HOM05D000246 ORTHO05D007179 4.5e-48 195.3 200 52.0
Gorai.007G299200 Gossypium raimondii HOM05D000246 ORTHO05D007179 1.7e-47 193.4 200 51.5
MD04G1201600 Malus domestica HOM05D000246 ORTHO05D007179 2.9e-47 192.6 204 49.5
Prupe.6G321800 Prunus persica HOM05D000246 ORTHO05D007179 3.8e-47 192.2 205 49.8
Duzib177G0836 Durio zibethinus HOM05D000246 ORTHO05D007179 2.5e-46 189.5 201 50.2
RcHm_v2.0_Chr3g0455521 Rosa chinensis HOM05D000246 ORTHO05D007179 3.2e-46 189.1 209 48.3
Gohir.A11G267000 Gossypium hirsutum HOM05D000246 ORTHO05D007179 1.2e-45 187.2 200 50.5
ClCG02G015470 Citrullus lanatus HOM05D000246 ORTHO05D007179 2.1e-45 186.4 207 49.8
COL.COLO4_10505 Corchorus olitorius HOM05D000246 ORTHO05D007179 2.1e-45 186.4 203 51.2
FAN02G0914 Fragaria x ananassa HOM05D000246 ORTHO05D007179 4.7e-45 185.3 176 50.6
MELO3C004226.2 Cucumis melo HOM05D000246 ORTHO05D007179 1.4e-44 183.7 208 49.5
Sabra05G0031700 Salix brachista HOM05D000359 ORTHO05D007179 1.4e-44 183.7 202 51.5
Haze_04155 Corylus avellana HOM05D000246 ORTHO05D007179 1.8e-44 183.3 216 49.1
FAN05G3600 Fragaria x ananassa HOM05D000246 ORTHO05D007179 1.8e-44 183.3 212 46.2
Cfa006619 Carpinus fangiana HOM05D000246 ORTHO05D007179 4.0e-44 182.2 188 52.7
Ciclev10000234m.g Citrus clementina HOM05D000246 ORTHO05D007179 5.2e-44 181.8 203 52.2
CsaV3_2G006600 Cucumis sativus L. HOM05D000246 ORTHO05D007179 6.7e-44 181.4 207 48.8
FAN14G0626 Fragaria x ananassa HOM05D000246 ORTHO05D007179 1.2e-43 180.6 176 50.0
Thecc.05G311900 Theobroma cacao HOM05D000246 ORTHO05D007179 1.2e-43 180.6 202 50.5
TWI56G0873 Tripterygium wilfordii HOM05D000246 ORTHO05D007179 1.2e-43 180.6 201 49.3
GSVIVG01031124001 Vitis vinifera HOM05D001472 ORTHO05D002655 2.0e-43 179.9 162 53.1
Lj5A431G15 Lonicera japonica HOM05D000246 ORTHO05D007179 7.5e-43 177.9 200 49.5
Manes.08G118800 Manihot esculenta HOM05D000246 ORTHO05D007179 7.5e-43 177.9 198 49.0
CiPaw.08G162700 Carya illinoinensis HOM05D000246 ORTHO05D007179 9.7e-43 177.6 214 48.6
FvH4_6g06440 Fragaria vesca HOM05D000246 ORTHO05D007179 9.7e-43 177.6 176 49.4
Glyma.20G236000 Glycine max HOM05D000246 ORTHO05D007179 9.7e-43 177.6 204 50.5
Lj5A421T62 Lonicera japonica HOM05D000246 ORTHO05D007179 1.3e-42 177.2 188 49.5
Sed0014533 Sechium edule HOM05D000246 ORTHO05D007179 2.2e-42 176.4 205 47.8
Potri.005G026400 Populus trichocarpa HOM05D000246 ORTHO05D007179 2.8e-42 176.0 203 50.2
Psat6g150320 Pisum sativum HOM05D000246 ORTHO05D007179 4.8e-42 175.3 202 50.0
vmacro04965 Vaccinium macrocarpon HOM05D000246 ORTHO05D007179 4.8e-42 175.3 197 48.7
Migut.B01029 Erythranthe guttata HOM05D000246 ORTHO05D007179 1.4e-41 173.7 195 46.7
Phvul.007G196600 Phaseolus vulgaris HOM05D000246 ORTHO05D007179 1.4e-41 173.7 205 52.2
CSS0043712 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 3.1e-41 172.6 197 47.7
Nitab4.5_0002344g0100 Nicotiana tabacum HOM05D000246 ORTHO05D007179 3.1e-41 172.6 195 49.2
QL03p021621 Quercus lobata HOM05D000246 ORTHO05D007179 3.1e-41 172.6 167 52.1
QL03p021635 Quercus lobata HOM05D000246 ORTHO05D007179 3.1e-41 172.6 167 52.1
arahy.Tifrunner.gnm1.ann1.K95L4M Arachis hypogaea HOM05D000246 ORTHO05D007179 4.1e-41 172.2 205 47.3
MBI19_g18874_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 4.1e-41 172.2 195 49.2
Aqoxy2G03005 Aquilegia oxysepala HOM05D000246 ORTHO05D007179 7.0e-41 171.4 197 48.2
Ca_10124_v3 Cicer arietinum L. HOM05D000246 ORTHO05D007179 7.0e-41 171.4 204 50.5
Cc00_g10440 Coffea canephora HOM05D000246 ORTHO05D007179 7.0e-41 171.4 193 48.7
Nitab4.5_0008329g0030 Nicotiana tabacum HOM05D000246 ORTHO05D007179 7.0e-41 171.4 194 47.4
arahy.Tifrunner.gnm1.ann1.JYY4I0 Arachis hypogaea HOM05D000246 ORTHO05D007179 9.1e-41 171.0 205 47.3
Lalb_Chr21g0310621 Lupinus albus HOM05D000246 ORTHO05D007179 9.1e-41 171.0 204 49.0
Peaxi162Scf00037g00932 Petunia axillaris HOM05D000246 ORTHO05D007179 1.2e-40 170.6 162 55.6
Lsat_1_v5_gn_9_123801 Lactuca sativa HOM05D000246 ORTHO05D007179 2.0e-40 169.9 195 44.6
ECA240G0991 Erigeron canadensis HOM05D000246 ORTHO05D007179 2.7e-40 169.5 191 45.5
CANSAT54G2417 Cannabis sativa HOM05D000246 ORTHO05D007179 1.0e-39 167.5 181 50.8
Hund21703 Selenicereus undatus HOM05D000246 ORTHO05D007179 1.0e-39 167.5 199 49.2
TPR.G6096 Trifolium pratense HOM05D000246 ORTHO05D007179 1.3e-39 167.2 217 46.5
PSO170G0679 Papaver somniferum HOM05D000246 ORTHO05D007179 1.7e-39 166.8 196 50.5
CAN.G1652.4 Capsicum annuum HOM05D000246 ORTHO05D007179 2.2e-39 166.4 195 46.7
TAR633G0108 Trochodendron aralioides HOM05D000246 ORTHO05D007179 3.8e-39 165.6 195 49.7
arahy.Tifrunner.gnm1.ann1.G0LK44 Arachis hypogaea HOM05D000246 ORTHO05D007179 6.5e-39 164.9 210 46.2
AUR62000778 Chenopodium quinoa HOM05D000246 ORTHO05D007179 8.5e-39 164.5 195 48.2
Sopen01g043000 Solanum pennellii HOM05D000246 ORTHO05D007179 8.5e-39 164.5 195 46.2
Cpa.g.sc48.83 Carica papaya HOM05D000246 ORTHO05D007179 1.1e-38 164.1 178 53.9
HanXRQChr03g0072511 Helianthus annuus HOM05D000246 ORTHO05D007179 2.7e-37 159.5 193 43.5
Nn3g21421 Nelumbo nucifera HOM05D000246 ORTHO05D007179 2.7e-37 159.5 197 48.7
Oeu012115.1 Olea europaea HOM05D000246 ORTHO05D007179 2.7e-37 159.5 161 50.3
EL10Ac4g09931 Beta vulgaris HOM05D000246 ORTHO05D007179 3.6e-37 159.1 201 47.3
Medtr1g083250 Medicago truncatula HOM05D000246 ORTHO05D007179 4.7e-37 158.7 204 45.1
AUR62005191 Chenopodium quinoa HOM05D000246 ORTHO05D007179 8.0e-37 157.9 194 46.9
PSO210G2254 Papaver somniferum HOM05D000246 ORTHO05D007179 8.0e-37 157.9 196 50.0
Lj5g0018456 Lotus japonicus HOM05D000246 ORTHO05D007179 8.8e-36 154.5 195 46.2
Actinidia05681 Actinidia chinensis HOM05D000246 ORTHO05D007179 1.5e-35 153.7 155 47.7
VMungo0720G1388 Vigna mungo HOM05D000246 ORTHO05D007179 2.6e-35 152.9 202 47.0
CDE01G0473 Ceratophyllum demersum HOM05D000246 ORTHO05D007179 4.8e-34 148.7 193 43.5
BraA06t26661Z Brassica rapa HOM05D000246 ORTHO05D007179 6.3e-34 148.3 183 44.8
Aa31LG11G9420 Aethionema arabicum HOM05D000246 ORTHO05D007179 8.3e-34 147.9 175 45.1
A06p37370 Brassica napus HOM05D000246 ORTHO05D007179 8.3e-34 147.9 198 43.9
Thhalv10003644m.g Eutrema salsugineum HOM05D000246 ORTHO05D007179 1.8e-33 146.7 198 43.4
FvH4_6g06441 Fragaria vesca HOM05D000246 ORTHO05D007179 2.4e-33 146.4 158 50.0
C07p41090 Brassica napus HOM05D000246 ORTHO05D007179 3.1e-33 146.0 183 44.8
BolC7t44636H Brassica oleracea HOM05D000246 ORTHO05D007179 3.1e-33 146.0 183 44.8
CARHR186200 Cardamine hirsuta HOM05D000246 ORTHO05D007179 2.7e-32 142.9 164 48.2
AT5G27680 Arabidopsis thaliana HOM05D000246 ORTHO05D007179 7.7e-32 141.4 164 46.3
AL6G39350 Arabidopsis lyrata HOM05D000246 ORTHO05D007179 2.9e-31 139.4 163 46.6
CSS0044658 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D007179 1.9e-30 136.7 135 53.3
Carub.0006s2490 Capsella rubella HOM05D000246 ORTHO05D007179 3.2e-30 136.0 163 43.6
Zm00001eb354210 Zea mays HOM05D000246 ORTHO05D007179 2.8e-29 132.9 203 40.4
ATR0210G017 Amborella trichopoda HOM05D000246 ORTHO05D007179 8.0e-29 131.3 196 43.9
FAN05G4756 Fragaria x ananassa HOM05D000246 ORTHO05D007179 4.0e-28 129.0 189 42.9
HPP92_010691 Vanilla planifolia HOM05D000246 ORTHO05D007179 4.0e-28 129.0 201 38.3
MBI19_g41249_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D007179 1.8e-25 120.2 142 43.7
Rhsim07G0187000 Rhododendron simsii HOM05D000246 ORTHO05D007179 2.3e-23 113.2 191 35.6
Dinv40318 Davidia involucrata HOM05D000246 ORTHO05D007179 6.6e-23 111.7 99 62.6
Solyc01g099470.3 Solanum lycopersicum HOM05D000246 ORTHO05D007179 2.5e-22 109.8 112 50.9
DCAR_003348 Daucus carota HOM05D000246 ORTHO05D007179 1.6e-21 107.1 167 38.9
SHI18110 Sapria himalayana HOM05D000246 ORTHO05D007179 1.7e-18 97.1 115 48.7
Aqoxy2G02800 Aquilegia oxysepala HOM05D000246 ORTHO05D007179 1.7e-15 87.0 77 55.8
SEGI_40367 Sequoiadendron giganteum HOM05D000246 ORTHO05D007179 9.5e-14 81.3 134 39.6
Pp3c20_2130 Physcomitrium patens HOM05D000246 ORTHO05D007179 1.1e-12 77.8 160 35.0
Sp2g20840 Schrenkiella parvula HOM05D000246 ORTHO05D007179 8.9e-12 74.7 192 32.8
Solyc01g099460.3 Solanum lycopersicum HOM05D000246 ORTHO05D007179 3.2e-09 66.2 100 38.0
Solyc02g088430.1 Solanum lycopersicum HOM05D000246 ORTHO05D007179 2.0e-08 63.5 153 32.7
BcaNung04538 Brassica carinata HOM05D005214 ORTHO05D005861 1.1e-06 57.8 71 46.5
C07p40980 Brassica napus HOM05D008896 ORTHO05D011108 7.3e-06 55.1 53 52.8


User provided reference genes

Program Settings