Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00874 Eucalyptus grandis HOM05D004256 ORTHO05D005224 0.0e+00 1426.0 719 100.0
Eucgr.K01946 Eucalyptus grandis HOM05D004256 ORTHO05D005224 0.0e+00 1344.7 697 97.3
Thecc.06G004200 Theobroma cacao HOM05D004256 ORTHO05D005224 1.2e-231 807.0 724 58.0
Atru.chr10.795 Acer truncatum HOM05D004256 ORTHO05D005224 2.2e-230 802.7 723 57.8
Sabra16G0315900 Salix brachista HOM05D004256 ORTHO05D005224 1.9e-229 799.7 724 57.6
Potri.001G465500 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.5e-229 799.3 727 58.3
COL.COLO4_26853 Corchorus olitorius HOM05D004256 ORTHO05D005224 3.2e-229 798.9 728 58.1
Dinv11058 Davidia involucrata HOM05D004256 ORTHO05D005224 2.7e-228 795.8 730 57.0
MD05G1271600 Malus domestica HOM05D004256 ORTHO05D005224 2.3e-227 792.7 725 57.2
PGR031G3593 Punica granatum HOM05D004256 ORTHO05D005224 1.1e-226 790.4 717 57.0
RcHm_v2.0_Chr5g0016471 Rosa chinensis HOM05D004256 ORTHO05D005224 7.4e-226 787.7 740 55.5
Prupe.4G091400 Prunus persica HOM05D004256 ORTHO05D005224 9.7e-226 787.3 725 56.3
Cfa004790 Carpinus fangiana HOM05D004256 ORTHO05D005224 1.3e-225 786.9 725 56.8
Duzib192G0446 Durio zibethinus HOM05D004256 ORTHO05D005224 2.2e-225 786.2 724 57.3
QL05p062735 Quercus lobata HOM05D004256 ORTHO05D005224 1.5e-223 780.0 727 57.4
Ciclev10014179m.g Citrus clementina HOM05D004256 ORTHO05D005224 5.9e-223 778.1 722 57.2
CiPaw.09G142400 Carya illinoinensis HOM05D004256 ORTHO05D005224 4.2e-221 771.9 735 55.4
FvH4_3g10230 Fragaria vesca HOM05D004256 ORTHO05D005224 3.6e-220 768.8 739 54.3
TWI38G1119 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 4.7e-220 768.5 719 56.6
TAR627G0580 Trochodendron aralioides HOM05D004256 ORTHO05D005224 5.2e-219 765.0 733 55.0
TWI63G0578 Tripterygium wilfordii HOM05D004256 ORTHO05D005224 8.8e-219 764.2 719 56.1
Gorai.010G144100 Gossypium raimondii HOM05D004256 ORTHO05D005224 2.0e-218 763.1 719 55.9
FAN21G3884 Fragaria x ananassa HOM05D004256 ORTHO05D005224 5.7e-218 761.5 739 54.3
FAN16G0878 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-217 760.4 757 53.2
Potri.011G163600 Populus trichocarpa HOM05D004256 ORTHO05D005224 2.8e-217 759.2 726 56.2
Manes.06G068000 Manihot esculenta HOM05D004256 ORTHO05D005224 3.7e-217 758.8 723 55.5
Gohir.D06G123900 Gossypium hirsutum HOM05D004256 ORTHO05D005224 4.8e-217 758.4 718 55.7
Gohir.A06G119600 Gossypium hirsutum HOM05D004256 ORTHO05D005224 2.4e-216 756.1 719 55.4
MD10G1252200 Malus domestica HOM05D004256 ORTHO05D005224 5.3e-216 755.0 725 55.2
GSVIVG01021670001 Vitis vinifera HOM05D004256 ORTHO05D005224 2.6e-215 752.7 723 54.9
CANSAT35G1931 Cannabis sativa HOM05D004256 ORTHO05D005224 8.8e-211 737.6 722 54.8
Rhsim02G0162800 Rhododendron simsii HOM05D004256 ORTHO05D005224 2.7e-207 726.1 733 52.8
MBI02_g25367_MAGBIO Magnolia biondii HOM05D004256 ORTHO05D005224 2.0e-202 709.9 728 52.1
ClCG03G008210 Citrullus lanatus HOM05D004256 ORTHO05D005224 9.8e-202 707.6 724 52.5
Cc09_g07800 Coffea canephora HOM05D004256 ORTHO05D005224 1.8e-200 703.4 729 52.7
FAN11G3535 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.8e-200 703.4 804 48.6
MELO3C002826.2 Cucumis melo HOM05D004256 ORTHO05D005224 5.4e-200 701.8 725 52.0
Glyma.05G126600 Glycine max HOM05D004256 ORTHO05D005224 1.0e-198 697.6 726 52.1
Migut.H01323 Erythranthe guttata HOM05D004256 ORTHO05D005224 5.0e-198 695.3 717 51.6
CsaV3_1G037200 Cucumis sativus L. HOM05D004256 ORTHO05D005224 5.5e-197 691.8 724 52.1
Peaxi162Scf00670g00215 Petunia axillaris HOM05D004256 ORTHO05D005224 2.1e-196 689.9 736 50.8
arahy.Tifrunner.gnm1.ann1.71MGM7 Arachis hypogaea HOM05D004256 ORTHO05D005224 6.1e-196 688.3 727 51.4
TPR.G30378 Trifolium pratense HOM05D004256 ORTHO05D005224 5.2e-195 685.3 727 52.0
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 1.2e-194 684.1 727 51.4
CAN.G79.16 Capsicum annuum HOM05D004256 ORTHO05D005224 1.3e-193 680.6 718 51.0
Nitab4.5_0001225g0210 Nicotiana tabacum HOM05D004256 ORTHO05D005224 2.2e-193 679.9 727 51.2
Glyma.08G081600 Glycine max HOM05D004256 ORTHO05D005224 2.8e-193 679.5 732 51.5
Solyc02g070030.4 Solanum lycopersicum HOM05D004256 ORTHO05D005224 5.4e-192 675.2 719 50.8
Phvul.002G198200 Phaseolus vulgaris HOM05D004256 ORTHO05D005224 1.2e-191 674.1 730 50.1
Dinv16826 Davidia involucrata HOM05D004256 ORTHO05D005224 5.9e-191 671.8 718 51.3
Lj4g0013937 Lotus japonicus HOM05D004256 ORTHO05D005224 1.3e-190 670.6 728 50.7
Lalb_Chr12g0208801 Lupinus albus HOM05D004256 ORTHO05D005224 1.7e-190 670.2 726 51.0
Ca_18290_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 3.9e-190 669.1 740 50.7
Sopen02g019190 Solanum pennellii HOM05D004256 ORTHO05D005224 3.9e-190 669.1 719 50.5
Medtr4g094545 Medicago truncatula HOM05D004256 ORTHO05D005224 1.5e-189 667.2 727 50.2
SalBow7G4118 Salvia bowleyana HOM05D004256 ORTHO05D005224 5.6e-189 665.2 717 49.7
Oeu014331.2 Olea europaea HOM05D004256 ORTHO05D005224 2.1e-188 663.3 689 51.4
SGA_v2.0_scaffold106G30680 Striga asiatica HOM05D004256 ORTHO05D005224 1.4e-187 660.6 718 50.7
Lalb_Chr13g0291451 Lupinus albus HOM05D004256 ORTHO05D005224 7.5e-186 654.8 725 49.9
Oeu021898.3 Olea europaea HOM05D004256 ORTHO05D005224 2.2e-185 653.3 723 49.1
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 1.1e-184 651.0 748 48.5
ECA236G4703 Erigeron canadensis HOM05D004256 ORTHO05D005224 4.1e-184 649.0 705 50.6
Ah.14g086130 Amaranthus hybridus HOM05D004256 ORTHO05D005224 1.6e-183 647.1 730 49.7
PSO675G2772 Papaver somniferum HOM05D004256 ORTHO05D005224 2.7e-183 646.4 725 49.2
THA.LOC104812246 Tarenaya hassleriana HOM05D004256 ORTHO05D005224 2.7e-183 646.4 722 49.0
Aqoxy5G02462 Aquilegia oxysepala HOM05D004256 ORTHO05D005224 2.8e-180 636.3 727 49.4
DCAR_003847 Daucus carota HOM05D004256 ORTHO05D005224 6.2e-180 635.2 753 46.5
Nitab4.5_0001583g0180 Nicotiana tabacum HOM05D004256 ORTHO05D005224 1.4e-179 634.0 678 51.3
Nn2g15522 Nelumbo nucifera HOM05D004256 ORTHO05D005224 3.4e-178 629.4 727 48.3
Psat7g093560 Pisum sativum HOM05D004256 ORTHO05D005224 4.4e-178 629.0 763 46.9
EL10Ac8g19544 Beta vulgaris HOM05D004256 ORTHO05D005224 5.4e-176 622.1 728 48.4
HanXRQChr04g0117221 Helianthus annuus HOM05D004256 ORTHO05D005224 1.0e-174 617.8 710 48.9
Sed0001829 Sechium edule HOM05D004256 ORTHO05D005224 2.5e-173 613.2 639 50.9
Aa31LG6G2980 Aethionema arabicum HOM05D004256 ORTHO05D005224 1.7e-169 600.5 732 46.9
Lj1A1161T63 Lonicera japonica HOM05D004256 ORTHO05D005224 4.9e-169 599.0 718 47.6
A01p12320 Brassica napus HOM05D004256 ORTHO05D005224 6.6e-166 588.6 755 45.7
Sp7g19000 Schrenkiella parvula HOM05D004256 ORTHO05D005224 2.5e-165 586.6 755 45.3
Lsat_1_v5_gn_7_34341 Lactuca sativa HOM05D004256 ORTHO05D005224 3.1e-163 579.7 683 48.3
BolC1t01426H Brassica oleracea HOM05D004256 ORTHO05D005224 6.8e-163 578.6 758 44.9
C01p14740 Brassica napus HOM05D004256 ORTHO05D005224 4.4e-162 575.9 756 44.7
Thhalv10024326m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 9.9e-162 574.7 746 44.8
Carub.0007s2052 Capsella rubella HOM05D004256 ORTHO05D005224 6.4e-161 572.0 763 44.6
HPP92_009410 Vanilla planifolia HOM05D004256 ORTHO05D005224 6.4e-161 572.0 723 45.2
AL7G33240 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 8.4e-161 571.6 759 44.5
CARHR227470 Cardamine hirsuta HOM05D004256 ORTHO05D005224 3.2e-160 569.7 756 44.8
AL7G33230 Arabidopsis lyrata HOM05D004256 ORTHO05D005224 4.2e-160 569.3 735 45.9
BraA01t01176Z Brassica rapa HOM05D004256 ORTHO05D005224 7.1e-160 568.5 788 43.9
FAN18G2742 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-158 564.7 725 44.3
Zm00001eb300700 Zea mays HOM05D004256 ORTHO05D005224 2.3e-158 563.5 735 43.7
Carub.0007s2051 Capsella rubella HOM05D004256 ORTHO05D005224 2.5e-157 560.1 731 45.3
Thhalv10024347m.g Eutrema salsugineum HOM05D004256 ORTHO05D005224 2.5e-157 560.1 751 44.9
AT4G20910 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 3.3e-157 559.7 752 44.5
Os07g0164000 Oryza sativa ssp. japonica HOM05D004256 ORTHO05D005224 9.6e-157 558.1 728 42.6
BraA01t01178Z Brassica rapa HOM05D004256 ORTHO05D005224 7.6e-154 548.5 754 43.8
FAN18G3233 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.3e-153 547.7 738 43.0
BcaC09g51291 Brassica carinata HOM05D004256 ORTHO05D005224 6.0e-151 538.9 749 43.8
C01p14750 Brassica napus HOM05D004256 ORTHO05D005224 1.5e-149 534.3 750 43.7
Sc17g0004590 Simmondsia chinensis HOM05D004256 ORTHO05D005224 4.3e-149 532.7 584 48.8
CARHR227480 Cardamine hirsuta HOM05D004256 ORTHO05D005224 2.0e-146 523.9 738 43.4
AT4G20920 Arabidopsis thaliana HOM05D004256 ORTHO05D005224 4.5e-146 522.7 697 44.6
Actinidia31384 Actinidia chinensis HOM05D004256 ORTHO05D005224 5.8e-146 522.3 557 49.4
BolC1t01428H Brassica oleracea HOM05D004256 ORTHO05D005224 3.8e-145 519.6 754 43.1
BcaB03g11710 Brassica carinata HOM05D004256 ORTHO05D005224 9.3e-144 515.0 810 39.8
ATR1098G117 Amborella trichopoda HOM05D004256 ORTHO05D005224 2.7e-143 513.5 648 44.0
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.7e-143 513.5 457 58.9
FAN13G2402 Fragaria x ananassa HOM05D004256 ORTHO05D005224 4.6e-143 512.7 695 44.2
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.0e-142 511.5 457 58.6
Cpa.g.sc166.41 Carica papaya HOM05D004256 ORTHO05D007693 8.2e-132 475.3 677 44.5
Hma1.2p1_2369F.1_g320760 Hydrangea macrophylla HOM05D004256 ORTHO05D005224 2.4e-131 473.8 479 53.4
AUR62043099 Chenopodium quinoa HOM05D004256 ORTHO05D005224 3.9e-126 456.4 579 44.0
AUR62034030 Chenopodium quinoa HOM05D004256 ORTHO05D005224 1.6e-124 451.1 579 43.7
BcaC09g51292 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-119 434.5 629 41.2
BraA01t01177Z Brassica rapa HOM05D004256 ORTHO05D005224 5.7e-117 426.0 625 41.0
Haze_10386 Corylus avellana HOM05D004256 ORTHO05D005224 8.2e-116 422.2 579 42.7
Haze_10384 Corylus avellana HOM05D004256 ORTHO05D005224 1.1e-115 421.8 579 42.7
FAN08G1809 Fragaria x ananassa HOM05D004256 ORTHO05D005224 8.5e-113 412.1 456 48.5
FAN04G0519 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.0e-105 388.7 513 42.7
Sp7g19005 Schrenkiella parvula HOM05D004256 ORTHO05D005224 1.5e-101 374.8 561 41.2
SMO165G0118 Selaginella moellendorffii HOM05D004256 ORTHO05D005224 8.0e-95 352.4 694 36.0
Pp3c1_60 Physcomitrium patens HOM05D004256 ORTHO05D005224 5.2e-94 349.7 785 32.1
Mapoly0004s0071 Marchantia polymorpha HOM05D004256 ORTHO05D005224 8.3e-92 342.4 780 33.2
AagrBONN_evm.TU.Sc2ySwM_117.1656 Anthoceros agrestis HOM05D004256 ORTHO05D005224 3.1e-91 340.5 705 34.2
Haze_10382 Corylus avellana HOM05D004256 ORTHO05D005224 3.0e-78 297.4 558 36.2
CSS0013637 Camellia sinensis var. sinensis HOM05D004256 ORTHO05D005224 1.3e-76 292.0 272 55.5
Zm00001eb161380 Zea mays HOM05D004256 ORTHO05D005224 9.5e-64 249.2 411 37.5
unitig_0.g923 Utricularia gibba HOM05D004256 ORTHO05D005224 1.4e-62 245.4 222 59.0
CDE02G0763 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 6.6e-57 226.5 404 35.4
BcaNung04718 Brassica carinata HOM05D004256 ORTHO05D005224 1.6e-50 205.3 272 40.8
BolC1t01427H Brassica oleracea HOM05D004256 ORTHO05D005224 3.0e-49 201.1 279 42.3
HanXRQChr04g0117231 Helianthus annuus HOM05D004256 ORTHO05D005224 3.3e-48 197.6 278 42.8
CBR_g29910 Chara braunii HOM05D000019 ORTHO05D005224 4.7e-47 193.7 935 24.6
Zm00001eb318270 Zea mays HOM05D004256 ORTHO05D005224 1.5e-45 188.7 306 37.9
BcaNung04717 Brassica carinata HOM05D004256 ORTHO05D005224 1.3e-39 169.1 429 32.6
Sc17g0004580 Simmondsia chinensis HOM05D004256 ORTHO05D005224 8.1e-39 166.4 116 71.6
Actinidia31383 Actinidia chinensis HOM05D004256 ORTHO05D005224 2.4e-38 164.9 116 70.7
BcaC09g51293 Brassica carinata HOM05D004256 ORTHO05D005224 6.7e-33 146.7 156 47.4
Haze_10375 Corylus avellana HOM05D004256 ORTHO05D005224 2.8e-31 141.4 229 38.4
FAN25G0985 Fragaria x ananassa HOM05D004256 ORTHO05D005224 1.1e-30 139.4 127 51.2
CDE02G4682 Ceratophyllum demersum HOM05D004256 ORTHO05D005224 4.0e-30 137.5 188 41.0
Ca_18291_v3 Cicer arietinum L. HOM05D004256 ORTHO05D005224 1.9e-27 128.6 121 57.0
Zm00001eb318280 Zea mays HOM05D004256 ORTHO05D005224 1.9e-27 128.6 140 52.1
Zm00001eb357190 Zea mays HOM05D004256 ORTHO05D005224 1.2e-26 125.9 226 34.1
BcaC01g00730 Brassica carinata HOM05D004256 ORTHO05D005224 4.6e-26 124.0 132 46.2
FAN08G3148 Fragaria x ananassa HOM05D004256 ORTHO05D005224 2.3e-25 121.7 250 33.6
Haze_01153 Corylus avellana HOM05D004256 ORTHO05D005224 3.3e-24 117.9 143 46.2
Actinidia33023 Actinidia chinensis HOM05D004256 ORTHO05D005224 6.3e-15 87.0 63 66.7
PGSC0003DMG400021115 Solanum tuberosum HOM05D004256 ORTHO05D005224 4.1e-14 84.3 105 41.0
arahy.Tifrunner.gnm1.ann1.2P4BCH Arachis hypogaea HOM05D004256 ORTHO05D005224 5.3e-14 84.0 229 30.1


User provided reference genes

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