Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00218 Eucalyptus grandis HOM05D000207 ORTHO05D004956 9.4e-50 199.9 102 100.0
Atru.chr4.2043 Acer truncatum HOM05D000207 ORTHO05D004956 2.3e-16 89.0 47 89.4
Atru.chr4.2046 Acer truncatum HOM05D000207 ORTHO05D004956 2.3e-16 89.0 47 89.4
Eucgr.E04319 Eucalyptus grandis HOM05D000207 ORTHO05D004956 2.3e-16 89.0 47 89.4
Potri.010G070500 Populus trichocarpa HOM05D000207 ORTHO05D004956 4.0e-16 88.2 47 87.2
AagrBONN_evm.TU.Sc2ySwM_344.2015 Anthoceros agrestis HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Aqoxy1G01024 Aquilegia oxysepala HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
arahy.Tifrunner.gnm1.ann1.AU04TH Arachis hypogaea HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
arahy.Tifrunner.gnm1.ann1.DCT04E Arachis hypogaea HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
EL10Ac3g04993 Beta vulgaris HOM05D000001 ORTHO05D000003 5.2e-16 87.8 47 87.2
CSS0020261 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
CANSAT54G2786 Cannabis sativa HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
CANSAT78G1427 Cannabis sativa HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Cpa.g.c34811.1 Carica papaya HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
CiPaw.01G183100 Carya illinoinensis HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
CDE06G2823 Ceratophyllum demersum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Ciclev10006856m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Ciclev10013219m.g Citrus clementina HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Cc03_g05640 Coffea canephora HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
COL.COLO4_26870 Corchorus olitorius HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
MELO3C006416.2 Cucumis melo HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
MELO3C007190.2 Cucumis melo HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
CsaV3_3G012020 Cucumis sativus L. HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Dinv27061 Davidia involucrata HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Duzib043G0002 Durio zibethinus HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Duzib160G0169 Durio zibethinus HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Duzib235G1015 Durio zibethinus HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Glyma.18G132700 Glycine max HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Gohir.1Z049411 Gossypium hirsutum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Gohir.A05G111600 Gossypium hirsutum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Gohir.D05G112000 Gossypium hirsutum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Gorai.009G116200 Gossypium raimondii HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Manes.15G041801 Manihot esculenta HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Mapoly0001s0403 Marchantia polymorpha HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Nn1g06872 Nelumbo nucifera HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Oeu005091.1 Olea europaea HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Os08g0444100 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
PSO170G5684 Papaver somniferum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
PSO198G0064 Papaver somniferum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
PSO210G1216 Papaver somniferum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
PSO210G6748 Papaver somniferum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Phvul.003G055200 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Potri.008G168000 Populus trichocarpa HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
PGR031G0434 Punica granatum HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
QL06p018332 Quercus lobata HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Sabra08G0128000 Salix brachista HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Sabra10G0036900 Salix brachista HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
SMO232G0034 Selaginella moellendorffii HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Hund03049 Selenicereus undatus HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Thecc.06G005500 Theobroma cacao HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
TWI53G1374 Tripterygium wilfordii HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
HPP92_005064 Vanilla planifolia HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
VMungo1127G0964 Vigna mungo HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
GSVIVG01027834001 Vitis vinifera HOM05D000207 ORTHO05D004956 5.2e-16 87.8 47 87.2
Lj3g0015983 Lotus japonicus HOM05D000207 ORTHO05D004956 6.8e-16 87.4 47 85.1
CiPaw.02G111100 Carya illinoinensis HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Ca_08207_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
DCAR_024259 Daucus carota HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
ECA232G2626 Erigeron canadensis HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
ECA240G3918 Erigeron canadensis HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Lsat_1_v5_gn_3_117461 Lactuca sativa HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Lalb_Chr02g0158811 Lupinus albus HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Medtr3g019300 Medicago truncatula HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Medtr3g019310 Medicago truncatula HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Medtr8g062750 Medicago truncatula HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Psat4g126040 Pisum sativum HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
Psat6g018880 Pisum sativum HOM05D000207 ORTHO05D004956 8.9e-16 87.0 47 85.1
CBR_g8906 Chara braunii HOM05D000207 ORTHO05D004956 1.2e-15 86.7 47 85.1
Os08g0278966 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004956 1.2e-15 86.7 47 85.1
Prupe.4G214000 Prunus persica HOM05D000207 ORTHO05D004956 1.2e-15 86.7 47 85.1
TAR365G0659 Trochodendron aralioides HOM05D000207 ORTHO05D004956 1.2e-15 86.7 47 85.1
VMungo0251G1197 Vigna mungo HOM05D000207 ORTHO05D004956 1.2e-15 86.7 47 85.1
ClCG01G024000 Citrullus lanatus HOM05D000207 ORTHO05D004956 1.5e-15 86.3 47 85.1
ClCG05G004290 Citrullus lanatus HOM05D000207 ORTHO05D004956 1.5e-15 86.3 47 85.1
Hund11897 Selenicereus undatus HOM05D000207 ORTHO05D004956 1.5e-15 86.3 47 87.2
AL3G37970 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
AL7G41900 Arabidopsis lyrata HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
AT4G14342 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
BcaC02g09324 Brassica carinata HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
BcaC06g35508 Brassica carinata HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
A04p07690 Brassica napus HOM05D000207 ORTHO05D000606 2.0e-15 85.9 47 85.1
A07p09140 Brassica napus HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
C04p41370 Brassica napus HOM05D000207 ORTHO05D000606 2.0e-15 85.9 47 85.1
C07p14090 Brassica napus HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
BraA04t16461Z Brassica rapa HOM05D000207 ORTHO05D000606 2.0e-15 85.9 47 85.1
Carub.0003s2357 Capsella rubella HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
CARHR099290 Cardamine hirsuta HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Thhalv10021852m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Thhalv10026688m.g Eutrema salsugineum HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
MD03G1200200 Malus domestica HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 83.0
MD11G1217300 Malus domestica HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 83.0
Sp3g20990 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Sp7g12410 Schrenkiella parvula HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Sed0003648 Sechium edule HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Sed0023527 Sechium edule HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
THA.LOC104808632 Tarenaya hassleriana HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
vmacro21388 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
vmacro21393 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Zm00001eb176950 Zea mays HOM05D000207 ORTHO05D004956 2.0e-15 85.9 47 85.1
Actinidia11350 Actinidia chinensis HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 83.0
Hma1.2p1_0992F.1_g245270 Hydrangea macrophylla HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 83.0
Nitab4.5_0001379g0120 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
Nitab4.5_0003038g0050 Nicotiana tabacum HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
Solyc04g008890.3 Solanum lycopersicum HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
Sopen04g004070 Solanum pennellii HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
Sopen08g022730 Solanum pennellii HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
PGSC0003DMG400025301 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
PGSC0003DMG400026872 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.6e-15 85.5 47 85.1
Actinidia39908 Actinidia chinensis HOM05D000207 ORTHO05D004956 3.4e-15 85.1 47 83.0
HanXRQChr03g0091521 Helianthus annuus HOM05D000207 ORTHO05D004956 3.4e-15 85.1 47 83.0
HanXRQChr13g0421281 Helianthus annuus HOM05D000207 ORTHO05D004956 3.4e-15 85.1 47 83.0
PSO063G3293 Papaver somniferum HOM05D000207 ORTHO05D004956 3.4e-15 85.1 47 83.0
arahy.Tifrunner.gnm1.ann1.Q94Q39 Arachis hypogaea HOM05D000677 ORTHO05D000727 4.4e-15 84.7 47 83.0
FvH4_3g22750 Fragaria vesca HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
FvH4_7g05750 Fragaria vesca HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN01G2221 Fragaria x ananassa HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN02G2410 Fragaria x ananassa HOM05D000709 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN05G5047 Fragaria x ananassa HOM05D000709 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN14G2395 Fragaria x ananassa HOM05D000709 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN16G2286 Fragaria x ananassa HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN16G2624 Fragaria x ananassa HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
FAN25G2312 Fragaria x ananassa HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
RcHm_v2.0_Chr5g0039761 Rosa chinensis HOM05D000207 ORTHO05D004956 4.4e-15 84.7 47 83.0
Aa31LG9G3040 Aethionema arabicum HOM05D001185 ORTHO05D002551 5.8e-15 84.3 47 83.0
AT3G23325 Arabidopsis thaliana HOM05D000207 ORTHO05D004956 5.8e-15 84.3 47 83.0
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 5.8e-15 84.3 44 88.6
BcaB02g08614 Brassica carinata HOM05D000207 ORTHO05D000606 5.8e-15 84.3 47 83.0
BolC4t25716H Brassica oleracea HOM05D000207 ORTHO05D004956 5.8e-15 84.3 47 83.0
BolC7t41906H Brassica oleracea HOM05D000207 ORTHO05D004956 5.8e-15 84.3 47 83.0
BraA07t28708Z Brassica rapa HOM05D000207 ORTHO05D004956 5.8e-15 84.3 47 83.0
AUR62026315 Chenopodium quinoa HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
AUR62026510 Chenopodium quinoa HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
CsaV3_6G051140 Cucumis sativus L. HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
Glyma.08G291500 Glycine max HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
Sc25g0003710 Simmondsia chinensis HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
HPP92_005049 Vanilla planifolia HOM05D000207 ORTHO05D004956 5.8e-15 84.3 44 88.6
Cfa022948 Carpinus fangiana HOM05D000411 ORTHO05D004956 7.5e-15 84.0 47 83.0
Solyc08g069080.4 Solanum lycopersicum HOM05D000207 ORTHO05D004956 7.5e-15 84.0 47 83.0
MSTRG.21917 Avicennia marina HOM05D000207 ORTHO05D004956 9.8e-15 83.6 47 83.0
Migut.N00279 Erythranthe guttata HOM05D000207 ORTHO05D004956 9.8e-15 83.6 47 83.0
Lsat_1_v5_gn_6_103061 Lactuca sativa HOM05D000207 ORTHO05D004956 9.8e-15 83.6 44 86.4
SalBow3G2895 Salvia bowleyana HOM05D000207 ORTHO05D004956 9.8e-15 83.6 47 83.0
FAN03G1535 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.3e-14 83.2 46 82.6
FAN06G2225 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.3e-14 83.2 46 82.6
FAN10G1241 Fragaria x ananassa HOM05D000207 ORTHO05D004956 1.3e-14 83.2 46 82.6
vmacro15450 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 2.2e-14 82.4 44 86.4
Dinv36552 Davidia involucrata HOM05D000207 ORTHO05D004956 2.9e-14 82.0 44 88.6
FAN09G1394 Fragaria x ananassa HOM05D000709 ORTHO05D004956 2.9e-14 82.0 47 80.9
PGSC0003DMG400029581 Solanum tuberosum HOM05D000207 ORTHO05D004956 2.9e-14 82.0 44 86.4
unitig_748.g7329 Utricularia gibba HOM05D000207 ORTHO05D000606 2.9e-14 82.0 47 83.0
arahy.Tifrunner.gnm1.ann1.6C1XPZ Arachis hypogaea HOM05D000207 ORTHO05D004956 3.7e-14 81.6 44 86.4
Migut.G00508 Erythranthe guttata HOM05D000207 ORTHO05D004956 3.7e-14 81.6 47 80.9
MCO09G487 Micromonas commoda HOM05D000207 ORTHO05D004956 7.0e-13 77.4 44 79.5
MBI16_g42515_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 9.2e-13 77.0 55 70.9
AagrBONN_evm.TU.Sc2ySwM_344.4872 Anthoceros agrestis HOM05D000170 ORTHO05D000159 1.6e-12 76.3 54 70.4
Cre14.g627900 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004956 2.0e-12 75.9 47 72.3
PRCOL_00006150 Prasinoderma coloniale HOM05D000207 ORTHO05D004956 3.5e-12 75.1 47 74.5
MBI07_g16899_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 1.0e-11 73.6 67 59.7
vmacro12999 Vaccinium macrocarpon HOM05D000207 ORTHO05D004956 3.0e-11 72.0 39 84.6
A06p07840 Brassica napus HOM05D000207 ORTHO05D004956 5.0e-11 71.2 41 78.0
Phvul.009G163800 Phaseolus vulgaris HOM05D000207 ORTHO05D004956 1.2e-09 66.6 35 85.7
Peaxi162Scf00681g00334 Petunia axillaris HOM05D000207 ORTHO05D004956 3.1e-08 62.0 31 90.3
MBI13_g27727_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004956 6.8e-08 60.8 31 87.1
MD12G1011100 Malus domestica HOM05D000207 ORTHO05D004956 6.8e-08 60.8 56 58.9
RcHm_v2.0_Chr7g0179491 Rosa chinensis HOM05D000207 ORTHO05D004956 8.9e-08 60.5 39 71.8
Zm00001eb114180 Zea mays HOM05D000207 ORTHO05D004956 1.2e-07 60.1 38 73.7


User provided reference genes

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