Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 0.0e+00 2192.9 1126 100.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1139.8 1128 55.9
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1122.8 1119 57.2
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1122.5 1130 56.6
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1093.6 1129 52.7
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 0.0e+00 1092.0 1130 56.0
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1091.3 1163 53.0
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 2.3e-311 1072.4 1136 54.1
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 1.5e-310 1069.7 1163 54.0
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.1e-308 1063.5 1136 53.4
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 8.7e-306 1053.9 1135 52.3
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 4.0e-303 1045.0 1130 53.8
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 9.0e-303 1043.9 1130 52.0
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 2.2e-301 1039.3 1170 50.2
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 1.1e-300 1036.9 1191 52.0
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.3e-298 1029.2 1147 50.1
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.4e-295 1019.2 1147 52.5
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 3.1e-295 1018.8 1141 50.7
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 9.7e-289 997.3 1135 51.0
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 5.3e-287 991.5 1228 48.1
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 4.5e-286 988.4 984 54.4
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 5.0e-285 984.9 1154 51.6
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.1e-284 983.8 1168 51.4
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.1e-283 979.5 984 53.8
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 3.3e-281 972.2 1141 50.1
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 7.2e-276 954.5 901 56.0
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 9.4e-276 954.1 1168 49.6
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 2.1e-275 953.0 1064 51.8
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.0e-274 950.7 1221 48.6
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 2.2e-272 943.0 1056 51.1
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 5.2e-266 921.8 1118 48.0
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 6.7e-266 921.4 1168 48.5
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 8.8e-266 921.0 1178 45.8
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 9.7e-265 917.5 1167 46.4
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 1.7e-264 916.8 1251 46.2
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.8e-264 916.0 1144 48.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 8.2e-264 914.4 1193 48.9
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 1.4e-263 913.7 1165 45.7
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.2e-262 910.6 1172 45.8
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 7.7e-262 907.9 1140 48.1
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.3e-261 907.1 1234 44.5
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 2.2e-261 906.4 1140 48.2
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 4.2e-260 902.1 1161 45.2
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 1.0e-258 897.5 1160 46.3
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 6.8e-258 894.8 1139 45.7
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 1.2e-257 894.0 1177 45.3
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 3.4e-257 892.5 874 54.2
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 2.2e-256 889.8 1168 46.3
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 3.7e-256 889.0 1181 47.2
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 3.7e-256 889.0 1154 45.5
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 2.4e-255 886.3 1161 46.5
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 2.4e-255 886.3 1093 47.2
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 9.1e-255 884.4 1174 44.9
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 6.5e-253 878.2 1232 44.5
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 3.2e-252 875.9 912 52.2
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 4.7e-251 872.1 910 52.0
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 8.0e-251 871.3 908 51.7
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.8e-250 870.2 647 65.5
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 4.0e-250 869.0 1158 47.3
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 8.8e-250 867.8 936 51.7
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 2.6e-249 866.3 908 51.4
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 2.2e-248 863.2 1158 44.2
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 2.4e-247 859.8 1127 45.5
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 7.8e-246 854.7 1184 43.9
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.0e-245 854.4 1177 44.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 8.6e-245 851.3 1065 46.4
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 3.3e-244 849.4 1177 45.2
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 1.6e-243 847.0 1191 43.6
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 2.1e-243 846.7 1245 45.0
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 3.6e-243 845.9 1077 46.0
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 1.3e-240 837.4 1118 45.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 5.4e-239 832.0 1129 44.9
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-238 830.9 1152 43.5
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 2.7e-238 829.7 1135 44.4
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.7e-238 829.7 1169 43.4
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 7.8e-238 828.2 1168 43.5
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 6.6e-237 825.1 1234 41.4
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 7.3e-236 821.6 902 50.9
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-235 820.8 1149 43.6
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 1.4e-234 817.4 1119 44.3
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 2.0e-233 813.5 1246 44.7
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 1.4e-231 807.4 1169 41.8
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 5.4e-231 805.4 901 50.1
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 7.0e-231 805.1 1119 43.6
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 2.0e-230 803.5 1179 42.0
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 9.5e-228 794.7 1141 43.1
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-226 791.2 876 49.9
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 1.4e-226 790.8 1159 42.2
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.5e-225 785.0 1146 44.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 7.5e-225 785.0 1146 44.2
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 2.3e-221 773.5 1124 41.9
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.3e-216 757.7 688 55.8
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.3e-212 741.9 1067 43.4
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 4.9e-208 729.2 632 58.9
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 9.9e-201 704.9 1067 43.3
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 1.3e-200 704.5 1114 40.8
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 8.4e-200 701.8 937 43.5
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 1.6e-195 687.6 1082 40.7
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.8e-195 686.8 1059 41.8
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 4.0e-186 656.4 810 45.8
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 4.5e-185 652.9 636 52.2
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 2.4e-178 630.6 1122 40.0
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 4.5e-177 626.3 760 47.5
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.6e-174 616.7 974 40.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 4.1e-170 603.2 917 41.9
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 9.4e-167 592.0 635 49.4
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 6.7e-157 559.3 508 56.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.1e-151 542.0 427 62.8
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.9e-145 519.6 769 41.4
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 2.5e-143 514.2 565 50.4
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 2.4e-138 497.7 563 50.4
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 1.1e-135 488.8 823 39.2
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.6e-113 415.2 659 38.1
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 6.0e-113 413.3 726 36.2
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 3.9e-104 384.0 1073 30.8
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.3e-103 380.6 343 56.3
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 1.3e-99 369.0 890 33.7
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 1.7e-99 368.6 890 33.7
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 5.4e-98 363.6 315 59.4
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.3e-95 354.4 626 39.1
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.0e-88 332.8 626 36.9
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 3.9e-88 330.9 307 56.4
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 2.6e-84 318.2 293 56.3
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.5e-84 317.4 280 55.4
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 7.6e-68 263.5 330 44.2
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.4e-61 242.7 466 44.4
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 1.5e-60 239.2 406 33.7
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.6e-36 158.7 309 37.2
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 1.8e-32 146.0 295 30.5
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.8e-29 136.0 580 25.9
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 9.4e-26 123.6 227 36.6
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 8.0e-25 120.6 268 29.9
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 2.7e-12 79.0 58 62.1
SHI12870 Sapria himalayana HOM05D005064 ORTHO05D006611 6.1e-09 67.8 116 42.2
Sabra06G0080700 Salix brachista HOM05D005064 ORTHO05D006611 6.4e-06 57.8 37 70.3


User provided reference genes

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