Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 6.4e-149 530.8 283 100.0
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 3.8e-48 196.1 289 47.4
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 1.6e-35 154.1 198 48.5
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 6.2e-35 152.1 287 37.6
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.0e-34 149.4 198 48.0
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 7.6e-33 145.2 253 39.1
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 9.9e-33 144.8 196 45.4
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 9.9e-33 144.8 275 38.5
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.3e-32 144.4 274 39.1
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.3e-32 144.4 281 35.2
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 3.8e-32 142.9 284 38.7
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.8e-32 142.9 201 43.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.8e-32 142.9 278 37.8
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 6.4e-32 142.1 281 38.8
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 6.4e-32 142.1 179 48.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 6.4e-32 142.1 255 38.4
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 8.4e-32 141.7 182 44.5
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 8.4e-32 141.7 201 42.8
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 1.4e-31 141.0 187 45.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.2e-31 139.8 201 42.8
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 4.2e-31 139.4 193 45.6
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.5e-31 139.0 159 46.5
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.6e-30 137.5 198 44.9
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.6e-30 137.5 179 44.1
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 1.6e-30 137.5 251 39.0
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 4.6e-30 136.0 162 45.7
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 6.0e-30 135.6 280 37.1
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-29 134.4 179 43.6
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.3e-29 134.4 179 43.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.3e-29 133.7 253 36.4
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.0e-29 133.3 286 34.3
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 5.1e-29 132.5 260 39.6
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 1.5e-28 131.0 145 48.3
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.5e-28 131.0 173 39.9
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.3e-28 129.8 199 41.7
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 9.6e-28 128.3 185 39.5
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 1.6e-27 127.5 134 50.7
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.1e-27 127.1 257 37.4
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 3.7e-27 126.3 150 44.7
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 6.2e-27 125.6 205 40.5
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.1e-26 124.8 206 40.3
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.8e-26 124.0 200 41.0
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 1.8e-26 124.0 272 32.7
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 3.1e-26 123.2 264 34.1
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 5.3e-26 122.5 155 41.3
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 5.3e-26 122.5 350 34.0
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 9.0e-26 121.7 270 32.2
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 9.0e-26 121.7 270 32.2
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 9.0e-26 121.7 278 30.9
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 1.5e-25 120.9 279 35.8
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.6e-25 120.2 140 48.6
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.4e-25 119.8 198 41.4
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 3.4e-25 119.8 265 32.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 4.5e-25 119.4 173 39.9
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 4.5e-25 119.4 196 36.7
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 4.5e-25 119.4 276 34.8
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 5.8e-25 119.0 172 41.3
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 5.8e-25 119.0 172 40.1
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.8e-25 119.0 195 41.0
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 7.6e-25 118.6 262 32.4
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.2e-24 117.1 181 39.8
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 2.2e-24 117.1 178 38.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 2.2e-24 117.1 300 35.7
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 2.9e-24 116.7 204 34.3
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 2.9e-24 116.7 141 46.1
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 3.8e-24 116.3 182 37.4
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.9e-24 115.9 156 40.4
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.9e-24 115.9 156 40.4
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.9e-24 115.9 156 40.4
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.9e-24 115.9 269 34.6
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.9e-24 115.9 180 41.7
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 6.5e-24 115.5 174 40.2
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-23 114.8 288 33.3
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 1.4e-23 114.4 247 36.0
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.5e-23 113.6 209 36.4
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 9.3e-23 111.7 193 36.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.2e-22 111.3 245 35.9
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 1.6e-22 110.9 217 35.0
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 2.1e-22 110.5 245 35.1
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.5e-22 109.8 205 37.6
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.5e-22 109.8 181 35.9
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 6.0e-22 109.0 164 37.8
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.3e-21 107.8 266 32.3
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 1.8e-21 107.5 317 31.2
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 3.0e-21 106.7 245 35.9
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 3.9e-21 106.3 186 36.0
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 5.1e-21 105.9 261 34.5
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 6.7e-21 105.5 372 32.8
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.5e-20 103.6 119 45.4
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.5e-20 103.6 119 45.4
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 4.3e-20 102.8 149 38.3
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 7.4e-20 102.1 190 38.4
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 7.4e-20 102.1 264 34.1
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 9.7e-20 101.7 264 34.1
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.3e-19 101.3 200 34.0
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.2e-19 100.5 271 34.3
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 2.8e-19 100.1 261 34.1
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 1.4e-18 97.8 186 41.4
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 1.8e-18 97.4 154 36.4
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 1.5e-17 94.4 287 29.6
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 2.0e-17 94.0 169 36.7
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-17 94.0 187 34.8
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 2.0e-17 94.0 187 34.8
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 2.0e-17 94.0 187 34.8
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 2.6e-17 93.6 187 34.8
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 2.6e-17 93.6 243 33.3
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 5.9e-17 92.4 117 44.4
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 5.9e-17 92.4 165 38.2
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 2.9e-16 90.1 204 31.4
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 2.5e-15 87.0 215 33.0
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 3.2e-15 86.7 376 27.1
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 5.5e-15 85.9 139 42.4
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 5.5e-15 85.9 135 44.4
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 7.2e-15 85.5 252 30.2
SEGI_27640 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 7.2e-15 85.5 157 37.6
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 1.2e-14 84.7 165 36.4
SEGI_27595 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.2e-14 84.7 159 34.6
SEGI_38205 Sequoiadendron giganteum HOM05D027190 ORTHO05D004692 1.2e-14 84.7 159 36.5
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 4.6e-14 82.8 183 33.3
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 1.8e-13 80.9 139 36.0
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 1.1e-12 78.2 189 29.1
TWI31G1174 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 1.1e-12 78.2 132 40.9
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 2.5e-12 77.0 154 31.8
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.7e-11 74.3 222 32.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 4.8e-11 72.8 87 44.8
MSTRG.17696 Avicennia marina HOM05D004190 ORTHO05D004692 6.3e-11 72.4 227 30.4
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 6.3e-11 72.4 147 34.0
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.1e-10 71.6 166 30.1
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.4e-10 70.5 102 45.1
PGSC0003DMG400006228 Solanum tuberosum HOM05D004190 ORTHO05D004692 3.1e-10 70.1 89 46.1
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 4.1e-10 69.7 229 30.1
unitig_8.g3659 Utricularia gibba HOM05D004190 ORTHO05D004692 5.3e-10 69.3 80 45.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.5e-09 67.8 112 39.3
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 2.6e-09 67.0 118 36.4
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 3.4e-09 66.6 114 38.6
Migut.N02470 Erythranthe guttata HOM05D004190 ORTHO05D004692 4.5e-09 66.2 234 29.9
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.9e-09 65.9 120 40.0
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 5.9e-09 65.9 52 55.8
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 5.9e-09 65.9 138 31.2
Aqoxy1G03565 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 1.0e-08 65.1 114 34.2
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 1.0e-08 65.1 126 36.5
SGA_v2.0_scaffold295G47507 Striga asiatica HOM05D004190 ORTHO05D004692 1.7e-08 64.3 201 32.3
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 2.9e-08 63.5 124 33.1
PSO339G5527 Papaver somniferum HOM05D066660 ORTHO05D004692 6.5e-08 62.4 158 33.5
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 8.5e-08 62.0 80 43.8
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 1.1e-07 61.6 169 29.0
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 1.1e-07 61.6 55 56.4
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 1.9e-07 60.8 156 33.3
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 2.5e-07 60.5 140 33.6
PSO384G5141 Papaver somniferum HOM05D066660 ORTHO05D004692 3.2e-07 60.1 158 32.9
Aqoxy4G00226 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 7.2e-07 58.9 137 29.2
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 9.4e-07 58.5 60 51.7
PSO384G2347 Papaver somniferum HOM05D066734 ORTHO05D004692 9.4e-07 58.5 122 36.9
Sopen10g021100 Solanum pennellii HOM05D004190 ORTHO05D018124 9.4e-07 58.5 86 44.2
PSO339G5001 Papaver somniferum HOM05D066734 ORTHO05D004692 1.2e-06 58.2 123 37.4
CAN.G1733.2 Capsicum annuum HOM05D004190 ORTHO05D004692 2.7e-06 57.0 171 28.1
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 2.7e-06 57.0 74 43.2
Solyc10g049990.1 Solanum lycopersicum HOM05D004190 ORTHO05D018124 2.7e-06 57.0 78 42.3
Aqoxy7G03749 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.6e-06 56.6 47 46.8
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 3.6e-06 56.6 140 33.6
SEGI_01639 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.6e-06 56.6 88 36.4
SEGI_04034 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.6e-06 56.6 88 36.4
SEGI_13254 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.6e-06 56.6 88 36.4
SEGI_35066 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 3.6e-06 56.6 88 36.4
Sopen00g012630 Solanum pennellii HOM05D004190 ORTHO05D004692 3.6e-06 56.6 82 40.2
Sopen01g043570 Solanum pennellii HOM05D004190 ORTHO05D004692 3.6e-06 56.6 82 40.2
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 4.7e-06 56.2 65 49.2
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.7e-06 56.2 135 28.1
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.7e-06 56.2 85 45.9
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 6.1e-06 55.8 146 29.5
SGA_v2.0_scaffold177G39450 Striga asiatica HOM05D004190 ORTHO05D004692 6.1e-06 55.8 243 30.9
Actinidia37202 Actinidia chinensis HOM05D004190 ORTHO05D004692 7.9e-06 55.5 120 30.8
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 7.9e-06 55.5 49 53.1
Dinv28454 Davidia involucrata HOM05D003520 ORTHO05D003332 7.9e-06 55.5 73 41.1


User provided reference genes

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