Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01430 Eucalyptus grandis HOM05D005026 ORTHO05D005981 4.5e-172 607.8 309 100.0
Thecc.02G058400 Theobroma cacao HOM05D005026 ORTHO05D005981 3.6e-129 465.3 312 78.5
CsaV3_2G016150 Cucumis sativus L. HOM05D005026 ORTHO05D005981 8.1e-129 464.2 317 77.6
ClCG02G011990 Citrullus lanatus HOM05D005026 ORTHO05D005981 4.0e-128 461.8 317 76.7
GSVIVG01024009001 Vitis vinifera HOM05D005026 ORTHO05D005981 6.8e-128 461.1 318 77.4
MELO3C020824.2 Cucumis melo HOM05D005026 ORTHO05D005981 2.6e-127 459.1 316 75.6
Potri.004G176200 Populus trichocarpa HOM05D005026 ORTHO05D005981 1.7e-126 456.4 310 77.4
PGR142G1000 Punica granatum HOM05D005026 ORTHO05D005981 2.2e-126 456.1 309 76.4
Gohir.D04G167700 Gossypium hirsutum HOM05D005026 ORTHO05D005981 8.4e-126 454.1 312 76.9
Gorai.012G156000 Gossypium raimondii HOM05D005026 ORTHO05D005981 8.4e-126 454.1 312 76.9
Nn3g19196 Nelumbo nucifera HOM05D005026 ORTHO05D005981 1.1e-125 453.8 314 75.2
Sed0021554 Sechium edule HOM05D005026 ORTHO05D005981 1.1e-125 453.8 317 76.3
FvH4_2g15441 Fragaria vesca HOM05D005026 ORTHO05D005981 4.2e-125 451.8 311 74.9
FAN24G0982 Fragaria x ananassa HOM05D005026 ORTHO05D005981 4.2e-125 451.8 311 74.9
Atru.chr5.3373 Acer truncatum HOM05D005026 ORTHO05D005981 5.4e-125 451.4 311 75.6
Gohir.A04G131300 Gossypium hirsutum HOM05D005026 ORTHO05D005981 7.1e-125 451.1 309 75.1
Sabra04G0118300 Salix brachista HOM05D005026 ORTHO05D005981 1.6e-124 449.9 310 76.1
COL.COLO4_17353 Corchorus olitorius HOM05D005026 ORTHO05D005981 2.1e-124 449.5 310 76.1
Gohir.D01G160600 Gossypium hirsutum HOM05D005026 ORTHO05D005981 4.6e-124 448.4 309 76.4
Gorai.002G199000 Gossypium raimondii HOM05D005026 ORTHO05D005981 4.6e-124 448.4 309 76.4
RcHm_v2.0_Chr6g0278411 Rosa chinensis HOM05D005026 ORTHO05D005981 4.6e-124 448.4 311 74.9
CSS0005811 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 6.0e-124 448.0 313 75.1
Sed0002674 Sechium edule HOM05D005026 ORTHO05D005981 7.8e-124 447.6 317 75.1
Ciclev10028903m.g Citrus clementina HOM05D005026 ORTHO05D005981 1.3e-123 446.8 309 76.1
vmacro17340 Vaccinium macrocarpon HOM05D005026 ORTHO05D005981 1.3e-123 446.8 312 75.0
Gohir.A01G169500 Gossypium hirsutum HOM05D005026 ORTHO05D005981 5.1e-123 444.9 316 76.3
CAN.G216.1 Capsicum annuum HOM05D005026 ORTHO05D005981 8.7e-123 444.1 315 74.9
arahy.Tifrunner.gnm1.ann1.UBN13B Arachis hypogaea HOM05D005026 ORTHO05D005981 3.3e-122 442.2 313 73.5
Prupe.8G166600 Prunus persica HOM05D005026 ORTHO05D005981 3.3e-122 442.2 312 75.6
TAR629G1604 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.3e-122 441.0 315 74.3
Peaxi162Scf00042g00232 Petunia axillaris HOM05D005026 ORTHO05D005981 9.6e-122 440.7 318 74.2
PGSC0003DMG400026715 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.6e-122 440.7 315 73.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.6e-121 439.9 311 73.6
arahy.Tifrunner.gnm1.ann1.Y470YU Arachis hypogaea HOM05D005026 ORTHO05D005981 2.8e-121 439.1 314 73.2
Nitab4.5_0005236g0010 Nicotiana tabacum HOM05D005026 ORTHO05D005981 3.6e-121 438.7 315 74.0
CiPaw.05G083000 Carya illinoinensis HOM05D005026 ORTHO05D005981 4.8e-121 438.3 310 73.9
Rhsim05G0054500 Rhododendron simsii HOM05D005026 ORTHO05D005981 4.8e-121 438.3 311 73.3
Sopen10g025430 Solanum pennellii HOM05D005026 ORTHO05D005981 6.2e-121 438.0 315 72.7
ECA234G1034 Erigeron canadensis HOM05D005026 ORTHO05D005981 1.1e-120 437.2 314 74.8
Manes.11G096700 Manihot esculenta HOM05D005026 ORTHO05D005981 1.1e-120 437.2 314 74.2
Solyc10g055640.2 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.1e-120 437.2 315 72.7
Actinidia21465 Actinidia chinensis HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 74.1
EL10Ac9g21369 Beta vulgaris HOM05D005026 ORTHO05D005981 5.3e-120 434.9 313 72.5
AUR62010035 Chenopodium quinoa HOM05D005026 ORTHO05D005981 5.3e-120 434.9 312 73.4
Duzib132G0031 Durio zibethinus HOM05D005026 ORTHO05D005981 1.2e-119 433.7 350 66.9
Cc09_g09870 Coffea canephora HOM05D005026 ORTHO05D005981 2.0e-119 433.0 312 73.7
Hma1.2p1_0163F.1_g072550 Hydrangea macrophylla HOM05D005026 ORTHO05D005981 2.0e-119 433.0 309 72.5
CANSAT78G2332 Cannabis sativa HOM05D005026 ORTHO05D005981 2.6e-119 432.6 311 74.9
AUR62013023 Chenopodium quinoa HOM05D005026 ORTHO05D005981 3.4e-119 432.2 312 73.7
Cfa005253 Carpinus fangiana HOM05D005026 ORTHO05D005981 4.4e-119 431.8 312 72.8
Glyma.10G281500 Glycine max HOM05D005026 ORTHO05D005981 4.4e-119 431.8 315 71.4
Lalb_Chr06g0163661 Lupinus albus HOM05D005026 ORTHO05D005981 5.8e-119 431.4 314 72.0
QL11p050624 Quercus lobata HOM05D005026 ORTHO05D005981 9.9e-119 430.6 310 72.9
QL11p050879 Quercus lobata HOM05D005026 ORTHO05D005981 9.9e-119 430.6 310 72.9
Aqoxy3G02662 Aquilegia oxysepala HOM05D005026 ORTHO05D005981 1.3e-118 430.3 322 71.7
Glyma.20G107700 Glycine max HOM05D005026 ORTHO05D005981 1.7e-118 429.9 314 70.7
PSO782G1462 Papaver somniferum HOM05D005026 ORTHO05D005981 1.7e-118 429.9 310 74.2
VMungo0720G0105 Vigna mungo HOM05D005026 ORTHO05D005981 4.9e-118 428.3 316 71.5
TPR.G2421 Trifolium pratense HOM05D005026 ORTHO05D005981 1.4e-117 426.8 316 69.6
Lalb_Chr02g0143411 Lupinus albus HOM05D005026 ORTHO05D005981 2.4e-117 426.0 312 71.5
Migut.N01326 Erythranthe guttata HOM05D005026 ORTHO05D005981 3.2e-117 425.6 314 71.3
unitig_578.g16751 Utricularia gibba HOM05D005026 ORTHO05D005981 4.2e-117 425.2 314 72.0
Lj5g0027913 Lotus japonicus HOM05D005026 ORTHO05D005981 1.2e-116 423.7 313 70.3
PSO063G0001 Papaver somniferum HOM05D005026 ORTHO05D005981 1.2e-116 423.7 310 73.5
Medtr1g112640 Medicago truncatula HOM05D005026 ORTHO05D005981 1.6e-116 423.3 312 69.2
Ca_11210_v3 Cicer arietinum L. HOM05D005026 ORTHO05D005981 2.1e-116 422.9 313 69.6
Oeu032531.1 Olea europaea HOM05D005026 ORTHO05D005981 2.1e-116 422.9 310 69.7
MSTRG.16919 Avicennia marina HOM05D005026 ORTHO05D005981 3.5e-116 422.2 311 71.4
Lsat_1_v5_gn_4_71761 Lactuca sativa HOM05D005026 ORTHO05D005981 4.6e-116 421.8 311 71.1
Nitab4.5_0002763g0050 Nicotiana tabacum HOM05D005026 ORTHO05D005981 4.6e-116 421.8 315 72.7
Phvul.007G019200 Phaseolus vulgaris HOM05D005026 ORTHO05D005981 1.3e-115 420.2 316 70.9
CARHR107140 Cardamine hirsuta HOM05D005026 ORTHO05D005981 6.6e-115 417.9 310 70.3
AL3G49570 Arabidopsis lyrata HOM05D005026 ORTHO05D005981 1.9e-114 416.4 309 70.2
Sp3g30150 Schrenkiella parvula HOM05D005026 ORTHO05D005981 2.5e-114 416.0 310 70.0
MD05G1122700 Malus domestica HOM05D005026 ORTHO05D005981 4.3e-114 415.2 309 71.2
TWI79G0831 Tripterygium wilfordii HOM05D005026 ORTHO05D005981 4.3e-114 415.2 320 70.3
Cpa.g.sc20.93 Carica papaya HOM05D005026 ORTHO05D005981 5.6e-114 414.8 267 81.3
HanXRQChr10g0300841 Helianthus annuus HOM05D005026 ORTHO05D005981 5.6e-114 414.8 319 69.3
DCAR_022946 Daucus carota HOM05D005026 ORTHO05D005981 2.1e-113 412.9 318 69.8
Carub.0003s3066 Capsella rubella HOM05D005026 ORTHO05D005981 4.8e-113 411.8 310 70.0
A07p04280 Brassica napus HOM05D005026 ORTHO05D005981 1.1e-112 410.6 309 69.6
BraA07t28219Z Brassica rapa HOM05D005026 ORTHO05D005981 1.1e-112 410.6 309 69.6
Ah.01g008260 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.8e-112 409.8 346 63.6
AT2G16860 Arabidopsis thaliana HOM05D005026 ORTHO05D005981 4.0e-112 408.7 309 69.3
BcaB03g16411 Brassica carinata HOM05D005026 ORTHO05D005981 5.3e-112 408.3 309 69.3
BcaC06g36185 Brassica carinata HOM05D005026 ORTHO05D005981 5.3e-112 408.3 314 68.5
C07p06780 Brassica napus HOM05D005026 ORTHO05D005981 5.3e-112 408.3 314 68.5
BolC7t41099H Brassica oleracea HOM05D005026 ORTHO05D005981 5.3e-112 408.3 314 68.5
Thhalv10022788m.g Eutrema salsugineum HOM05D005026 ORTHO05D005981 6.9e-112 407.9 310 70.3
THA.LOC104819652 Tarenaya hassleriana HOM05D005026 ORTHO05D005981 1.2e-111 407.1 311 69.8
PGSC0003DMG400010588 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.9e-111 404.1 311 68.8
SalBow1G5110 Salvia bowleyana HOM05D005026 ORTHO05D005981 3.8e-110 402.1 318 67.6
Haze_02129 Corylus avellana HOM05D005026 ORTHO05D005981 2.7e-108 396.0 292 71.6
Sc18g0006400 Simmondsia chinensis HOM05D005026 ORTHO05D005981 4.6e-108 395.2 323 65.9
Sopen07g025840 Solanum pennellii HOM05D005026 ORTHO05D005981 7.9e-108 394.4 311 66.9
CDE04G3302 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.0e-107 394.0 315 66.0
Nn1g09206 Nelumbo nucifera HOM05D005026 ORTHO05D005981 9.0e-104 380.9 223 85.2
Ah.01g023090 Amaranthus hybridus HOM05D005026 ORTHO05D005981 1.3e-102 377.1 262 75.2
Zm00001eb272560 Zea mays HOM05D005026 ORTHO05D005981 1.3e-102 377.1 337 60.5
Oeu015515.5 Olea europaea HOM05D005026 ORTHO05D005981 8.4e-102 374.4 335 62.1
MBI02_g23401_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 4.2e-101 372.1 286 69.9
Zm00001eb227710 Zea mays HOM05D005026 ORTHO05D005981 2.7e-100 369.4 350 59.1
Os06g0711600 Oryza sativa ssp. japonica HOM05D005026 ORTHO05D005981 7.9e-100 367.9 328 60.4
Lj5A178G71 Lonicera japonica HOM05D005026 ORTHO05D005981 3.9e-99 365.5 202 89.1
CDE06G2829 Ceratophyllum demersum HOM05D005026 ORTHO05D005981 1.4e-96 357.1 311 63.3
FAN20G3067 Fragaria x ananassa HOM05D005026 ORTHO05D005981 9.0e-96 354.4 266 69.9
Actinidia28532 Actinidia chinensis HOM05D005026 ORTHO05D005981 1.1e-93 347.4 249 73.1
HanXRQChr10g0300791 Helianthus annuus HOM05D005026 ORTHO05D005981 4.2e-93 345.5 203 83.7
Mapoly0011s0013 Marchantia polymorpha HOM05D005026 ORTHO05D005981 4.6e-92 342.0 306 58.5
Pp3c18_8200 Physcomitrium patens HOM05D005026 ORTHO05D005981 8.7e-91 337.8 317 55.5
ATR0665G437 Amborella trichopoda HOM05D005026 ORTHO05D005981 1.1e-90 337.4 211 79.6
Sc14g0002280 Simmondsia chinensis HOM05D005026 ORTHO05D005981 1.9e-90 336.7 312 61.5
Ciclev10023429m.g Citrus clementina HOM05D005026 ORTHO05D005981 2.6e-87 326.2 268 65.3
Sed0003938 Sechium edule HOM05D005026 ORTHO05D005981 4.5e-87 325.5 316 58.2
SMO143G0164 Selaginella moellendorffii HOM05D005026 ORTHO05D005981 6.1e-84 315.1 309 56.0
RcHm_v2.0_Chr1g0323251 Rosa chinensis HOM05D005026 ORTHO05D005981 3.1e-80 302.8 311 56.6
HanXRQChr05g0128751 Helianthus annuus HOM05D005026 ORTHO05D005981 3.4e-79 299.3 185 80.5
CAN.G641.54 Capsicum annuum HOM05D005026 ORTHO05D005981 1.9e-69 266.9 231 65.8
Aa31LG8G14070 Aethionema arabicum HOM05D005026 ORTHO05D005981 6.7e-67 258.5 294 52.0
Peaxi162Scf00042g02315 Petunia axillaris HOM05D005026 ORTHO05D005981 2.4e-64 250.0 388 43.8
CBR_g18651 Chara braunii HOM05D005026 ORTHO05D005981 4.1e-64 249.2 417 41.5
Sopen08g021400 Solanum pennellii HOM05D005026 ORTHO05D005981 3.5e-63 246.1 248 60.1
Solyc08g067460.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.8e-59 233.8 191 69.1
Solyc07g052200.1 Solanum lycopersicum HOM05D005026 ORTHO05D005981 1.2e-47 194.5 310 44.2
Duzib052G0155 Durio zibethinus HOM05D005026 ORTHO05D005981 2.0e-47 193.7 117 83.8
Cre01.g037400 Chlamydomonas reinhardtii HOM05D000144 ORTHO05D005981 1.3e-46 191.0 224 46.4
HanXRQChr10g0300831 Helianthus annuus HOM05D005026 ORTHO05D005981 1.1e-45 188.0 197 56.3
MCO14G518 Micromonas commoda HOM05D000144 ORTHO05D005981 8.0e-44 181.8 220 46.4
Psat0s3098g0080 Pisum sativum HOM05D005026 ORTHO05D005981 1.4e-43 181.0 193 54.9
TAR624G0954 Trochodendron aralioides HOM05D005026 ORTHO05D005981 1.0e-38 164.9 95 87.4
HPP92_003763 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.0e-38 164.9 134 64.9
AagrBONN_evm.TU.Sc2ySwM_344.1326 Anthoceros agrestis HOM05D005026 ORTHO05D005981 8.6e-38 161.8 200 46.0
PGSC0003DMG400010589 Solanum tuberosum HOM05D005026 ORTHO05D005981 8.6e-38 161.8 247 46.2
BcaB03g16410 Brassica carinata HOM05D005026 ORTHO05D005981 2.1e-36 157.1 96 84.4
HPP92_021456 Vanilla planifolia HOM05D005026 ORTHO05D005981 9.8e-34 148.3 122 65.6
CSS0001365 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.3e-33 147.9 126 61.9
CSS0005878 Camellia sinensis var. sinensis HOM05D005026 ORTHO05D005981 1.3e-33 147.9 126 61.9
RcHm_v2.0_Chr2g0134101 Rosa chinensis HOM05D005026 ORTHO05D005981 1.3e-33 147.9 190 47.9
Actinidia00627 Actinidia chinensis HOM05D005026 ORTHO05D005981 3.7e-33 146.4 93 82.8
PGSC0003DMG400028947 Solanum tuberosum HOM05D005026 ORTHO05D005981 9.5e-29 131.7 80 81.2
RcHm_v2.0_Chr6g0295751 Rosa chinensis HOM05D005026 ORTHO05D005981 3.6e-28 129.8 139 55.4
PRCOL_00006468 Prasinoderma coloniale HOM05D000144 ORTHO05D334079 4.1e-24 116.3 240 36.7
HPP92_021472 Vanilla planifolia HOM05D005026 ORTHO05D005981 1.3e-22 111.3 99 62.6
TAR624G1238 Trochodendron aralioides HOM05D005026 ORTHO05D005981 7.6e-18 95.5 80 67.5
TAR624G0203 Trochodendron aralioides HOM05D005026 ORTHO05D005981 3.8e-17 93.2 64 78.1
Dinv14115 Davidia involucrata HOM05D005026 ORTHO05D005981 2.2e-09 67.4 35 85.7
Psat6g231960 Pisum sativum HOM05D005026 ORTHO05D005981 8.4e-09 65.5 129 38.8
Nn1g09215 Nelumbo nucifera HOM05D005026 ORTHO05D005981 3.2e-08 63.5 33 84.8
Rhsim10G0139600 Rhododendron simsii HOM05D000038 ORTHO05D000143 9.3e-08 62.0 57 64.9
Pp3c21_12130 Physcomitrium patens HOM05D005026 ORTHO05D005981 1.3e-06 58.2 62 56.5
MBI18_g05076_MAGBIO Magnolia biondii HOM05D005026 ORTHO05D005981 1.7e-06 57.8 42 61.9
Duzib248G0175 Durio zibethinus HOM05D002972 ORTHO05D002272 3.9e-06 56.6 41 58.5


User provided reference genes

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