Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.8e-193 679.1 342 100.0
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.6e-146 523.1 340 75.3
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 6.8e-145 517.7 340 73.2
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 8.9e-145 517.3 340 73.5
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 2.6e-144 515.8 340 74.1
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 1.2e-141 506.9 340 73.5
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 5.1e-140 501.5 319 74.6
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 9.5e-139 497.3 309 75.7
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 2.1e-138 496.1 341 69.5
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 1.1e-137 493.8 305 75.7
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 1.1e-137 493.8 328 71.3
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 1.4e-137 493.4 340 70.6
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 5.2e-137 491.5 340 70.6
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.5e-136 490.0 340 70.6
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 5.8e-136 488.0 317 73.5
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 7.6e-136 487.6 305 75.7
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 9.9e-136 487.3 340 69.7
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 1.6e-133 479.9 348 69.8
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 4.6e-133 478.4 305 74.8
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 7.8e-133 477.6 306 74.2
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 7.8e-133 477.6 306 74.2
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 1.0e-132 477.2 303 73.6
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 1.7e-132 476.5 304 71.7
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 3.0e-132 475.7 347 67.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 1.1e-131 473.8 309 72.8
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 2.5e-131 472.6 309 72.2
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 4.7e-130 468.4 344 66.0
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 6.2e-130 468.0 305 72.5
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 8.1e-130 467.6 343 67.1
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.8e-129 466.5 346 67.1
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 9.0e-129 464.2 303 72.3
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 9.0e-129 464.2 302 72.2
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 1.2e-128 463.8 302 70.5
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 1.5e-128 463.4 302 73.5
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 2.0e-128 463.0 340 67.6
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 2.6e-128 462.6 306 69.6
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 3.4e-128 462.2 340 65.9
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 5.8e-128 461.5 346 67.1
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 7.6e-128 461.1 302 71.5
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 1.3e-127 460.3 303 71.9
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 2.9e-127 459.1 304 69.4
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 6.4e-127 458.0 344 64.0
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 8.4e-127 457.6 322 68.0
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 1.9e-126 456.4 340 67.1
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 1.6e-125 453.4 302 71.2
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 1.6e-125 453.4 302 71.2
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 1.6e-125 453.4 319 68.3
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 2.7e-125 452.6 398 58.8
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 3.0e-124 449.1 327 67.0
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.9e-124 448.7 349 65.0
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 5.1e-124 448.4 304 67.8
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 5.1e-124 448.4 309 66.7
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 6.6e-124 448.0 411 57.7
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 6.6e-124 448.0 321 67.3
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 8.7e-124 447.6 370 61.1
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.9e-123 446.4 344 62.2
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.9e-123 446.4 346 65.6
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.5e-123 446.0 347 63.1
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 2.5e-123 446.0 302 67.5
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 8.1e-122 441.0 303 67.3
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 5.3e-121 438.3 358 60.6
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.5e-120 436.8 340 64.4
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.0e-120 436.4 352 63.1
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 9.9e-120 434.1 340 65.3
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 8.4e-119 431.0 303 69.6
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 1.6e-117 426.8 346 62.1
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 1.1e-115 420.6 360 60.3
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-115 420.6 301 65.8
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.9e-115 419.9 301 65.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 1.9e-115 419.9 302 64.6
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 1.9e-115 419.9 301 65.8
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.5e-115 419.5 301 65.1
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 3.3e-115 419.1 301 65.1
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 3.3e-115 419.1 301 65.1
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 9.6e-115 417.5 345 59.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 6.2e-114 414.8 301 64.5
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.1e-113 414.1 301 64.5
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 1.4e-113 413.7 271 69.4
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 2.4e-113 412.9 301 64.1
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 3.1e-113 412.5 301 64.8
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 4.0e-113 412.1 335 60.9
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 2.0e-112 409.8 301 63.1
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 2.6e-112 409.5 317 65.3
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 4.5e-112 408.7 341 59.2
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 3.8e-111 405.6 337 59.9
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 5.5e-110 401.7 319 60.2
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 4.0e-105 385.6 333 58.9
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 3.4e-104 382.5 380 56.6
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.0e-103 380.9 308 58.4
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 1.0e-103 380.9 420 52.4
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 3.8e-103 379.0 295 61.4
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.1e-102 377.5 331 57.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.1e-102 377.5 331 57.7
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 1.1e-102 377.5 339 55.2
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 5.1e-100 368.6 300 56.3
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 2.5e-99 366.3 333 56.2
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 8.2e-98 361.3 321 57.3
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.4e-97 360.5 299 55.9
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 6.9e-97 358.2 305 59.0
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 3.4e-96 355.9 331 54.4
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.1e-94 350.9 298 57.4
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 2.5e-94 349.7 371 48.8
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 2.5e-94 349.7 353 53.0
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 1.2e-93 347.4 331 53.5
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 4.6e-93 345.5 290 61.7
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 3.2e-86 322.8 301 55.5
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 7.4e-83 311.6 305 53.1
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 2.9e-79 299.7 336 46.4
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 4.2e-78 295.8 253 59.7
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 6.1e-77 292.0 341 43.7
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 1.5e-75 287.3 338 43.2
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 6.1e-69 265.4 288 53.1
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 3.7e-66 256.1 181 66.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 2.7e-64 250.0 216 58.8
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 5.9e-64 248.8 233 55.4
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 1.5e-62 244.2 144 77.1
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 3.2e-62 243.0 188 61.2
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.8e-57 227.3 281 44.1
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 2.3e-52 210.3 390 35.4
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 7.0e-49 198.7 126 75.4
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 5.0e-39 166.0 290 36.6
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.3e-31 141.4 96 71.9
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 1.6e-29 134.4 99 67.7
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 4.0e-28 129.8 188 43.1
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.3e-26 124.8 98 63.3
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 6.6e-23 112.5 68 75.0
CARHR113290 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.4e-17 94.0 72 62.5
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.3e-15 87.4 62 62.9
Oeu017817.1 Olea europaea HOM05D001353 ORTHO05D002359 5.8e-11 72.8 55 54.5
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.2e-08 65.1 53 58.5
Oeu028353.1 Olea europaea HOM05D005778 ORTHO05D007245 2.1e-08 64.3 45 68.9
MSTRG.15763 Avicennia marina HOM05D005778 ORTHO05D038954 8.7e-07 58.9 41 68.3
CARHR113280 Cardamine hirsuta HOM05D000125 ORTHO05D009513 1.5e-06 58.2 37 62.2


User provided reference genes

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