Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.H01418 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.8e-82 308.5 152 100.0
Eucgr.H01429 Eucalyptus grandis HOM05D007082 ORTHO05D008895 2.6e-80 302.0 152 97.4
Eucgr.H01442 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.4e-80 301.6 152 96.7
Eucgr.H01435 Eucalyptus grandis HOM05D007082 ORTHO05D008895 3.8e-79 298.1 152 96.1
Eucgr.L00806 Eucalyptus grandis HOM05D007082 ORTHO05D008895 5.3e-57 224.6 152 73.7
TWI12G0539 Tripterygium wilfordii HOM05D007082 ORTHO05D008895 3.2e-54 215.3 156 69.2
PGR119G0159 Punica granatum HOM05D007082 ORTHO05D008895 7.9e-53 210.7 153 68.6
MSTRG.18253 Avicennia marina HOM05D007082 ORTHO05D008895 1.3e-50 203.4 144 62.5
Ciclev10022619m.g Citrus clementina HOM05D007082 ORTHO05D008895 1.7e-50 203.0 152 63.8
Dinv32900 Davidia involucrata HOM05D007082 ORTHO05D008895 1.7e-50 203.0 143 66.4
Lj2P1167T48 Lonicera japonica HOM05D007082 ORTHO05D008895 2.2e-50 202.6 144 63.9
Manes.01G205300 Manihot esculenta HOM05D007082 ORTHO05D008895 2.8e-50 202.2 154 65.6
CiPaw.07G089100 Carya illinoinensis HOM05D007082 ORTHO05D008895 8.2e-50 200.7 148 65.5
Haze_04674 Corylus avellana HOM05D007082 ORTHO05D008895 1.1e-49 200.3 148 64.9
Lj2g0002316 Lotus japonicus HOM05D007082 ORTHO05D008895 1.1e-49 200.3 152 61.8
vmacro14749 Vaccinium macrocarpon HOM05D007082 ORTHO05D008895 1.4e-49 199.9 144 68.1
CSS0021912 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.8e-49 199.5 146 66.4
CSS0029740 Camellia sinensis var. sinensis HOM05D007082 ORTHO05D008895 1.8e-49 199.5 146 66.4
CANSAT25G2376 Cannabis sativa HOM05D007082 ORTHO05D008895 1.8e-49 199.5 152 63.8
Haze_10047 Corylus avellana HOM05D007082 ORTHO05D008895 1.8e-49 199.5 148 64.9
Potri.005G212900 Populus trichocarpa HOM05D007082 ORTHO05D008895 1.8e-49 199.5 155 61.3
SalBow4G2456 Salvia bowleyana HOM05D007082 ORTHO05D008895 2.4e-49 199.1 144 62.5
Atru.chr5.1487 Acer truncatum HOM05D000296 ORTHO05D000175 3.1e-49 198.7 154 63.6
Cfa004492 Carpinus fangiana HOM05D007082 ORTHO05D008895 1.5e-48 196.4 148 64.9
Oeu025749.1 Olea europaea HOM05D007082 ORTHO05D008895 2.6e-48 195.7 144 62.5
Lalb_Chr10g0095561 Lupinus albus HOM05D007082 ORTHO05D008895 3.4e-48 195.3 144 64.6
Rhsim13G0027400 Rhododendron simsii HOM05D007082 ORTHO05D008895 3.4e-48 195.3 145 66.2
HanXRQChr05g0154391 Helianthus annuus HOM05D007082 ORTHO05D008895 1.0e-47 193.7 151 59.6
Sabra05G0162600 Salix brachista HOM05D004770 ORTHO05D005572 1.0e-47 193.7 152 60.5
TAR622G1184 Trochodendron aralioides HOM05D007082 ORTHO05D008895 1.0e-47 193.7 143 62.2
CAN.G410.16 Capsicum annuum HOM05D007082 ORTHO05D008895 2.2e-47 192.6 144 59.7
Psat6g025560 Pisum sativum HOM05D007082 ORTHO05D008895 6.5e-47 191.0 149 58.4
Prupe.8G236800 Prunus persica HOM05D004770 ORTHO05D005572 6.5e-47 191.0 157 59.9
Hund09516 Selenicereus undatus HOM05D007082 ORTHO05D008895 6.5e-47 191.0 153 61.4
Thecc.05G027700 Theobroma cacao HOM05D007082 ORTHO05D008895 6.5e-47 191.0 150 58.7
Cc01_g19180 Coffea canephora HOM05D007082 ORTHO05D008895 8.5e-47 190.7 144 59.0
arahy.Tifrunner.gnm1.ann1.4F6QX0 Arachis hypogaea HOM05D007082 ORTHO05D008895 1.1e-46 190.3 149 62.4
Migut.D00329 Erythranthe guttata HOM05D007082 ORTHO05D008895 1.4e-46 189.9 152 59.2
arahy.Tifrunner.gnm1.ann1.CZ80LA Arachis hypogaea HOM05D007082 ORTHO05D008895 2.5e-46 189.1 148 62.8
Sopen01g035010 Solanum pennellii HOM05D007082 ORTHO05D008895 2.5e-46 189.1 144 62.5
Medtr1g033230 Medicago truncatula HOM05D007082 ORTHO05D008895 3.2e-46 188.7 151 58.9
Haze_10052 Corylus avellana HOM05D007082 ORTHO05D008895 4.2e-46 188.3 148 61.5
TPR.G34570 Trifolium pratense HOM05D007082 ORTHO05D008895 4.2e-46 188.3 151 57.0
MD03G1260600 Malus domestica HOM05D007082 ORTHO05D008895 5.5e-46 188.0 155 60.0
COL.COLO4_14680 Corchorus olitorius HOM05D007082 ORTHO05D008895 7.2e-46 187.6 149 59.1
Nn5g27058 Nelumbo nucifera HOM05D007082 ORTHO05D008895 9.4e-46 187.2 143 63.6
SHI10976 Sapria himalayana HOM05D007082 ORTHO05D008895 9.4e-46 187.2 152 58.6
QL12p020738 Quercus lobata HOM05D007082 ORTHO05D008895 1.2e-45 186.8 148 61.5
Medtr5g020430 Medicago truncatula HOM05D007082 ORTHO05D008895 1.6e-45 186.4 151 58.3
Nitab4.5_0016351g0010 Nicotiana tabacum HOM05D007082 ORTHO05D008895 2.1e-45 186.0 143 58.7
RcHm_v2.0_Chr6g0290411 Rosa chinensis HOM05D007082 ORTHO05D008895 2.1e-45 186.0 147 59.2
SGA_v2.0_scaffold1G00512 Striga asiatica HOM05D007082 ORTHO05D008895 2.1e-45 186.0 153 58.8
DCAR_002714 Daucus carota HOM05D007082 ORTHO05D008895 2.7e-45 185.7 152 58.6
SGA_v2.0_scaffold12G06137 Striga asiatica HOM05D003153 ORTHO05D008895 6.1e-45 184.5 152 59.2
THA.LOC104800748 Tarenaya hassleriana HOM05D007082 ORTHO05D008895 1.0e-44 183.7 152 59.9
Duzib128G1180 Durio zibethinus HOM05D007082 ORTHO05D008895 2.3e-44 182.6 149 57.0
Lsat_1_v5_gn_9_86820 Lactuca sativa HOM05D007082 ORTHO05D008895 3.9e-44 181.8 151 57.6
CsaV3_2G013600 Cucumis sativus L. HOM05D007082 ORTHO05D008895 2.0e-43 179.5 150 58.0
FvH4_2g23151 Fragaria vesca HOM05D007082 ORTHO05D008895 4.4e-43 178.3 150 57.3
PSO210G1980 Papaver somniferum HOM05D007082 ORTHO05D008895 5.7e-43 177.9 150 54.0
Psat6g050280 Pisum sativum HOM05D007082 ORTHO05D008895 7.4e-43 177.6 150 57.3
Aa31LG5G6620 Aethionema arabicum HOM05D007082 ORTHO05D008895 9.7e-43 177.2 151 55.0
MELO3C014298.2 Cucumis melo HOM05D007082 ORTHO05D008895 9.7e-43 177.2 150 57.3
FAN20G2212 Fragaria x ananassa HOM05D007082 ORTHO05D008895 9.7e-43 177.2 150 56.0
Cpa.g.sc41.65 Carica papaya HOM05D007082 ORTHO05D008895 1.3e-42 176.8 144 56.2
PSO832G2607 Papaver somniferum HOM05D007082 ORTHO05D008895 1.3e-42 176.8 150 54.0
Lsat_1_v5_gn_9_6120 Lactuca sativa HOM05D007082 ORTHO05D008895 4.8e-42 174.9 151 55.6
ClCG07G000420 Citrullus lanatus HOM05D007082 ORTHO05D008895 1.1e-41 173.7 151 56.3
CARHR006820 Cardamine hirsuta HOM05D007082 ORTHO05D008895 2.4e-41 172.6 152 54.6
MBI19_g34822_MAGBIO Magnolia biondii HOM05D007082 ORTHO05D008895 2.4e-41 172.6 146 54.8
AL1G17250 Arabidopsis lyrata HOM05D007082 ORTHO05D008895 5.3e-41 171.4 152 53.3
CDE05G2411 Ceratophyllum demersum HOM05D007082 ORTHO05D008895 5.3e-41 171.4 146 54.8
Actinidia00788 Actinidia chinensis HOM05D004770 ORTHO05D005572 1.2e-40 170.2 150 59.3
Sed0015110 Sechium edule HOM05D007082 ORTHO05D008895 1.2e-40 170.2 157 54.1
Sc05g0001390 Simmondsia chinensis HOM05D007082 ORTHO05D008895 2.0e-40 169.5 149 53.0
Ah.11g050380 Amaranthus hybridus HOM05D007082 ORTHO05D008895 3.5e-40 168.7 152 53.3
AT1G07130 Arabidopsis thaliana HOM05D007082 ORTHO05D008895 3.5e-40 168.7 152 51.3
Glyma.08G176000 Glycine max HOM05D007082 ORTHO05D008895 5.9e-40 167.9 152 55.9
Gorai.001G088200 Gossypium raimondii HOM05D007082 ORTHO05D008895 5.9e-40 167.9 149 51.0
HanXRQChr16g0516211 Helianthus annuus HOM05D007082 ORTHO05D008895 1.0e-39 167.2 141 56.0
Gohir.D07G082600 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.3e-39 166.8 149 51.0
EL10Ac5g10526 Beta vulgaris HOM05D007082 ORTHO05D008895 5.0e-39 164.9 152 50.7
VMungo1215G3041 Vigna mungo HOM05D007082 ORTHO05D008895 6.5e-39 164.5 152 54.6
Sp1g05880 Schrenkiella parvula HOM05D007082 ORTHO05D008895 4.2e-38 161.8 152 51.3
Carub.0001s0641 Capsella rubella HOM05D007082 ORTHO05D008895 2.1e-37 159.5 152 50.0
Thhalv10008979m.g Eutrema salsugineum HOM05D007082 ORTHO05D008895 2.1e-37 159.5 152 52.0
SEGI_21621 Sequoiadendron giganteum HOM05D007082 ORTHO05D008895 1.4e-36 156.8 153 52.3
ECA247G0055 Erigeron canadensis HOM05D007082 ORTHO05D008895 6.7e-36 154.5 116 56.9
Zm00001eb394240 Zea mays HOM05D007082 ORTHO05D008895 6.7e-36 154.5 152 52.0
Lj3g0026065 Lotus japonicus HOM05D007082 ORTHO05D008895 8.8e-36 154.1 112 61.6
unitig_0.g135 Utricularia gibba HOM05D004770 ORTHO05D005572 8.8e-36 154.1 143 49.7
BolC8t47089H Brassica oleracea HOM05D007082 ORTHO05D008895 1.2e-35 153.7 152 48.7
Os03g0366900 Oryza sativa ssp. japonica HOM05D007082 ORTHO05D008895 1.5e-35 153.3 149 50.3
C08p02920 Brassica napus HOM05D007082 ORTHO05D008895 4.4e-35 151.8 152 48.0
A08p35770 Brassica napus HOM05D007082 ORTHO05D008895 9.7e-35 150.6 152 47.4
BraA08t35483Z Brassica rapa HOM05D007082 ORTHO05D008895 9.7e-35 150.6 152 47.4
Phvul.003G015400 Phaseolus vulgaris HOM05D007082 ORTHO05D008895 4.1e-33 145.2 149 49.7
BolC8t47080H Brassica oleracea HOM05D007082 ORTHO05D008895 7.0e-33 144.4 152 45.4
BcaB03g13405 Brassica carinata HOM05D007082 ORTHO05D008895 5.9e-32 141.4 151 46.4
Mapoly0041s0121 Marchantia polymorpha HOM05D007082 ORTHO05D008895 7.7e-32 141.0 147 46.3
Gohir.A07G077800 Gossypium hirsutum HOM05D007082 ORTHO05D008895 1.0e-31 140.6 149 46.3
Pp3c1_6180 Physcomitrium patens HOM05D007082 ORTHO05D008895 3.8e-31 138.7 147 44.2
C08p02850 Brassica napus HOM05D007082 ORTHO05D008895 9.4e-30 134.0 166 40.4
AUR62011993 Chenopodium quinoa HOM05D007082 ORTHO05D008895 6.1e-29 131.3 156 44.2
AUR62032313 Chenopodium quinoa HOM05D007082 ORTHO05D008895 1.8e-28 129.8 156 44.2
MD15G1065600 Malus domestica HOM05D007082 ORTHO05D008895 8.8e-28 127.5 126 52.4
ATR0580G091 Amborella trichopoda HOM05D007082 ORTHO05D008895 1.7e-26 123.2 144 46.5
SGA_v2.0_scaffold80G25747 Striga asiatica HOM05D004770 ORTHO05D005572 1.4e-25 120.2 152 46.1
AagrBONN_evm.TU.Sc2ySwM_117.1416 Anthoceros agrestis HOM05D007082 ORTHO05D008895 5.0e-23 111.7 143 38.5
Aqoxy5G02465 Aquilegia oxysepala HOM05D007082 ORTHO05D008895 2.1e-21 106.3 149 40.9
Medtr5g020340 Medicago truncatula HOM05D000096 ORTHO05D008895 6.1e-21 104.8 132 43.2
SMO307G0023 Selaginella moellendorffii HOM05D007082 ORTHO05D008895 2.1e-13 79.7 131 37.4
MCO14G264 Micromonas commoda HOM05D007082 ORTHO05D008895 2.3e-12 76.3 115 31.3
Actinidia09115 Actinidia chinensis HOM05D007082 ORTHO05D008895 2.0e-11 73.2 52 63.5
CAN.G308.33 Capsicum annuum HOM05D002728 ORTHO05D002874 3.5e-08 62.4 127 26.0
Sc05g0001360 Simmondsia chinensis HOM05D007082 ORTHO05D008895 3.0e-07 59.3 144 31.2
PGSC0003DMG403013782 Solanum tuberosum HOM05D002728 ORTHO05D002874 6.6e-07 58.2 127 24.4
Thhalv10021296m.g Eutrema salsugineum HOM05D002728 ORTHO05D002874 8.6e-07 57.8 118 28.8
TAR626G0658 Trochodendron aralioides HOM05D002728 ORTHO05D002874 1.1e-06 57.4 125 25.6
Oeu009852.1 Olea europaea HOM05D002728 ORTHO05D002874 1.5e-06 57.0 138 25.4
Rhsim03G0264700 Rhododendron simsii HOM05D002728 ORTHO05D002874 1.5e-06 57.0 126 24.6
PGSC0003DMG400045025 Solanum tuberosum HOM05D007082 ORTHO05D008895 1.5e-06 57.0 105 34.3
THA.LOC104803594 Tarenaya hassleriana HOM05D002728 ORTHO05D002874 1.9e-06 56.6 136 23.5
AL4G14970 Arabidopsis lyrata HOM05D002728 ORTHO05D002874 2.5e-06 56.2 115 26.1
CARHR076950 Cardamine hirsuta HOM05D002728 ORTHO05D002874 2.5e-06 56.2 118 28.0
Duzib168G0477 Durio zibethinus HOM05D002728 ORTHO05D002874 2.5e-06 56.2 126 25.4
Sp3g01980 Schrenkiella parvula HOM05D002728 ORTHO05D002874 2.5e-06 56.2 118 27.1
Manes.03G002500 Manihot esculenta HOM05D002728 ORTHO05D002874 3.3e-06 55.8 126 25.4
Nitab4.5_0004944g0050 Nicotiana tabacum HOM05D002728 ORTHO05D002874 3.3e-06 55.8 127 23.6
Peaxi162Scf01115g00007 Petunia axillaris HOM05D007082 ORTHO05D008895 3.3e-06 55.8 54 50.0
Actinidia17316 Actinidia chinensis HOM05D002728 ORTHO05D002874 4.3e-06 55.5 138 23.9
BcaB04g21396 Brassica carinata HOM05D002728 ORTHO05D002874 4.3e-06 55.5 118 28.8
BcaNung03547 Brassica carinata HOM05D002728 ORTHO05D002874 4.3e-06 55.5 118 29.7
BNapus_Darmor_BZH_scaffold_129p00170 Brassica napus HOM05D002728 ORTHO05D002874 4.3e-06 55.5 118 29.7
BolC1t05863H Brassica oleracea HOM05D002728 ORTHO05D002874 4.3e-06 55.5 118 29.7
BraA01t04606Z Brassica rapa HOM05D002728 ORTHO05D002874 4.3e-06 55.5 118 29.7
Nitab4.5_0006838g0010 Nicotiana tabacum HOM05D002728 ORTHO05D002874 4.3e-06 55.5 127 23.6
MSTRG.19298 Avicennia marina HOM05D002728 ORTHO05D002874 5.6e-06 55.1 126 25.4
CDE10G0114 Ceratophyllum demersum HOM05D002728 ORTHO05D002874 5.6e-06 55.1 126 25.4
DCAR_000664 Daucus carota HOM05D002728 ORTHO05D002874 5.6e-06 55.1 131 24.4
SalBow6G5526 Salvia bowleyana HOM05D002728 ORTHO05D002874 5.6e-06 55.1 124 26.6
SGA_v2.0_scaffold13G06659 Striga asiatica HOM05D002728 ORTHO05D002874 5.6e-06 55.1 126 24.6
Aa31LG7G11480 Aethionema arabicum HOM05D002728 ORTHO05D002874 7.3e-06 54.7 120 23.3
Migut.J00687 Erythranthe guttata HOM05D002728 ORTHO05D002874 7.3e-06 54.7 126 25.4
Gorai.013G212100 Gossypium raimondii HOM05D002728 ORTHO05D002874 7.3e-06 54.7 126 24.6
PRCOL_00001098 Prasinoderma coloniale HOM05D007082 ORTHO05D008895 7.3e-06 54.7 155 27.7
Dinv42718 Davidia involucrata HOM05D002728 ORTHO05D002874 9.5e-06 54.3 126 24.6
Dinv43383 Davidia involucrata HOM05D002728 ORTHO05D002874 9.5e-06 54.3 126 24.6
Sc06g0001190 Simmondsia chinensis HOM05D002728 ORTHO05D002874 9.5e-06 54.3 122 27.9
unitig_22.g5140 Utricularia gibba HOM05D002728 ORTHO05D002874 9.5e-06 54.3 126 24.6
vmacro06011 Vaccinium macrocarpon HOM05D002728 ORTHO05D002874 9.5e-06 54.3 126 23.8


User provided reference genes

Program Settings