Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F01175 Eucalyptus grandis HOM05D006561 ORTHO05D008097 1.4e-142 509.6 256 100.0
Cfa020616 Carpinus fangiana HOM05D006561 ORTHO05D008097 5.5e-91 338.2 251 66.9
Haze_09389 Corylus avellana HOM05D006561 ORTHO05D008097 1.4e-89 333.6 257 65.4
PGR083G2053 Punica granatum HOM05D006561 ORTHO05D008097 2.6e-88 329.3 256 63.7
Dinv14944 Davidia involucrata HOM05D006561 ORTHO05D008097 1.4e-86 323.6 251 63.7
Rhsim06G0203200 Rhododendron simsii HOM05D006561 ORTHO05D008097 2.4e-86 322.8 251 63.3
TWI38G0530 Tripterygium wilfordii HOM05D006561 ORTHO05D008097 2.4e-86 322.8 251 63.3
CiPaw.11G166900 Carya illinoinensis HOM05D006561 ORTHO05D008097 7.0e-86 321.2 254 61.8
Manes.03G104900 Manihot esculenta HOM05D006561 ORTHO05D008097 9.2e-86 320.9 254 63.8
Atru.chr2.2390 Acer truncatum HOM05D006561 ORTHO05D008097 1.7e-84 316.6 254 60.6
Oeu005397.1 Olea europaea HOM05D006561 ORTHO05D008097 8.6e-84 314.3 251 61.4
TAR627G0129 Trochodendron aralioides HOM05D006561 ORTHO05D008097 7.3e-83 311.2 255 60.8
CSS0025681 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 6.1e-82 308.1 251 61.8
CSS0029173 Camellia sinensis var. sinensis HOM05D006561 ORTHO05D008097 6.1e-82 308.1 251 61.8
Hma1.2p1_0416F.1_g148410 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 8.0e-82 307.8 250 58.4
ClCG11G017750 Citrullus lanatus HOM05D006561 ORTHO05D008097 1.0e-81 307.4 245 59.6
Migut.M00775 Erythranthe guttata HOM05D006561 ORTHO05D008097 1.0e-81 307.4 248 59.7
Thecc.07G098700 Theobroma cacao HOM05D006561 ORTHO05D008097 2.0e-80 303.1 274 55.5
Ciclev10009269m.g Citrus clementina HOM05D006561 ORTHO05D008097 2.6e-80 302.8 251 60.2
Nitab4.5_0002019g0020 Nicotiana tabacum HOM05D006561 ORTHO05D008097 5.8e-80 301.6 251 59.4
Nitab4.5_0000246g0010 Nicotiana tabacum HOM05D006561 ORTHO05D008097 2.2e-79 299.7 251 59.0
MSTRG.15242 Avicennia marina HOM05D006561 ORTHO05D008097 2.9e-79 299.3 251 59.4
Potri.011G141200 Populus trichocarpa HOM05D006561 ORTHO05D008097 3.7e-79 298.9 258 58.5
PGSC0003DMG401012439 Solanum tuberosum HOM05D006561 ORTHO05D008097 8.3e-79 297.7 256 56.6
Gohir.D01G047500 Gossypium hirsutum HOM05D006561 ORTHO05D008097 1.1e-78 297.4 255 56.5
Gorai.002G067000 Gossypium raimondii HOM05D006561 ORTHO05D008097 1.1e-78 297.4 255 56.5
Sed0026268 Sechium edule HOM05D006561 ORTHO05D008097 1.9e-78 296.6 243 58.8
Nn1g06395 Nelumbo nucifera HOM05D006561 ORTHO05D008097 4.1e-78 295.4 251 59.4
RcHm_v2.0_Chr5g0032331 Rosa chinensis HOM05D006561 ORTHO05D008097 9.2e-78 294.3 255 59.6
CsaV3_4G033370 Cucumis sativus L. HOM05D006561 ORTHO05D008097 2.0e-77 293.1 245 59.6
MELO3C025617.2 Cucumis melo HOM05D006561 ORTHO05D008097 2.7e-77 292.7 253 58.5
Gohir.A01G061000 Gossypium hirsutum HOM05D006561 ORTHO05D008097 4.6e-77 292.0 255 55.7
Solyc07g062780.3 Solanum lycopersicum HOM05D006561 ORTHO05D008097 4.6e-77 292.0 255 56.9
MD03G1235300 Malus domestica HOM05D006561 ORTHO05D008097 7.8e-77 291.2 243 60.1
Sabra11G0126800 Salix brachista HOM05D006561 ORTHO05D008097 1.0e-76 290.8 258 56.6
Sopen07g031000 Solanum pennellii HOM05D006561 ORTHO05D008097 1.3e-76 290.4 257 56.4
Prupe.4G174000 Prunus persica HOM05D006561 ORTHO05D008097 3.0e-76 289.3 211 64.0
Cpa.g.sc80.2 Carica papaya HOM05D006561 ORTHO05D008097 6.6e-76 288.1 246 58.9
Cc05_g11670 Coffea canephora HOM05D006561 ORTHO05D008097 8.6e-76 287.7 249 58.2
Lsat_1_v5_gn_5_127501 Lactuca sativa HOM05D006561 ORTHO05D008097 8.6e-76 287.7 256 57.0
Sc16g0007290 Simmondsia chinensis HOM05D006561 ORTHO05D008097 3.3e-75 285.8 254 56.3
CARHR090130 Cardamine hirsuta HOM05D006561 ORTHO05D008097 7.3e-75 284.6 247 58.3
Duzib213G1006 Durio zibethinus HOM05D006561 ORTHO05D008097 9.5e-75 284.3 248 56.9
THA.LOC104818093 Tarenaya hassleriana HOM05D006561 ORTHO05D008097 9.5e-75 284.3 248 56.9
PSO675G8981 Papaver somniferum HOM05D006561 ORTHO05D008097 3.6e-74 282.3 251 54.6
FvH4_3g19260 Fragaria vesca HOM05D006561 ORTHO05D008097 4.7e-74 282.0 255 57.3
Lalb_Chr25g0286221 Lupinus albus HOM05D006561 ORTHO05D008097 4.7e-74 282.0 248 54.8
vmacro11896 Vaccinium macrocarpon HOM05D006561 ORTHO05D008097 8.0e-74 281.2 321 47.7
VMungo1080G0633 Vigna mungo HOM05D006561 ORTHO05D008097 8.0e-74 281.2 248 55.6
GSVIVG01014276001 Vitis vinifera HOM05D006561 ORTHO05D008097 8.0e-74 281.2 215 61.9
ECA234G0004 Erigeron canadensis HOM05D006561 ORTHO05D008097 1.8e-73 280.0 246 57.3
Phvul.005G029100 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 1.8e-73 280.0 248 55.6
A05p34300 Brassica napus HOM05D006561 ORTHO05D008097 2.3e-73 279.6 247 55.1
FAN11G0360 Fragaria x ananassa HOM05D006561 ORTHO05D008097 3.1e-73 279.3 255 56.9
Aqoxy1G02303 Aquilegia oxysepala HOM05D006561 ORTHO05D008097 4.0e-73 278.9 246 54.1
BcaB06g29539 Brassica carinata HOM05D006561 ORTHO05D008097 4.0e-73 278.9 247 55.1
CANSAT35G0349 Cannabis sativa HOM05D006561 ORTHO05D008097 6.8e-73 278.1 250 54.4
DCAR_017121 Daucus carota HOM05D006561 ORTHO05D008097 8.9e-73 277.7 252 56.0
FAN25G3572 Fragaria x ananassa HOM05D006561 ORTHO05D008097 1.2e-72 277.3 255 56.5
Sp3g13360 Schrenkiella parvula HOM05D006561 ORTHO05D008097 1.2e-72 277.3 247 55.5
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 1.5e-72 276.9 239 58.6
Thhalv10021394m.g Eutrema salsugineum HOM05D006561 ORTHO05D008097 2.0e-72 276.6 247 55.5
C05p52080 Brassica napus HOM05D006561 ORTHO05D008097 3.4e-72 275.8 247 54.7
BolC5t33893H Brassica oleracea HOM05D006561 ORTHO05D008097 5.8e-72 275.0 247 54.7
Lj8A153G39 Lonicera japonica HOM05D006561 ORTHO05D008097 5.8e-72 275.0 204 64.7
HanXRQChr10g0302511 Helianthus annuus HOM05D006561 ORTHO05D008097 1.3e-71 273.9 255 56.5
EL10Ac4g08253 Beta vulgaris HOM05D006561 ORTHO05D008097 2.9e-71 272.7 252 52.8
BraA05t22251Z Brassica rapa HOM05D006561 ORTHO05D008097 2.9e-71 272.7 254 53.5
Psat0s1402g0080 Pisum sativum HOM05D006561 ORTHO05D008097 2.9e-71 272.7 244 53.3
Glyma.13G273500 Glycine max HOM05D006561 ORTHO05D008097 8.3e-71 271.2 250 54.4
AL3G27540 Arabidopsis lyrata HOM05D006561 ORTHO05D008097 1.4e-70 270.4 242 57.0
AT3G15150 Arabidopsis thaliana HOM05D006561 ORTHO05D008097 1.4e-70 270.4 242 56.6
Hund17607 Selenicereus undatus HOM05D006561 ORTHO05D008097 1.9e-70 270.0 252 55.2
Ca_03532_v3 Cicer arietinum L. HOM05D006561 ORTHO05D008097 2.4e-70 269.6 248 54.8
Carub.0003s1480 Capsella rubella HOM05D006561 ORTHO05D008097 3.2e-70 269.2 242 56.2
AUR62019482 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.2e-70 269.2 252 53.2
SHI39306 Sapria himalayana HOM05D006561 ORTHO05D008097 1.6e-69 266.9 246 52.4
SHI39545 Sapria himalayana HOM05D006561 ORTHO05D008097 1.6e-69 266.9 246 52.4
AUR62036152 Chenopodium quinoa HOM05D006561 ORTHO05D008097 3.9e-68 262.3 252 52.4
ATR0602G252 Amborella trichopoda HOM05D006561 ORTHO05D008097 1.1e-67 260.8 253 50.2
MBI02_g25404_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.1e-67 260.8 250 53.2
Medtr2g078640 Medicago truncatula HOM05D006561 ORTHO05D008097 1.5e-67 260.4 244 51.6
Peaxi162Scf00069g01837 Petunia axillaris HOM05D006561 ORTHO05D008097 3.3e-67 259.2 251 54.2
CAN.G162.30 Capsicum annuum HOM05D006561 ORTHO05D008097 5.6e-67 258.5 211 57.3
unitig_747.g21579 Utricularia gibba HOM05D006561 ORTHO05D008097 2.1e-66 256.5 246 52.4
TPR.G7947 Trifolium pratense HOM05D006561 ORTHO05D008097 1.8e-65 253.4 248 50.4
arahy.Tifrunner.gnm1.ann1.RM2LTG Arachis hypogaea HOM05D006561 ORTHO05D008097 2.3e-65 253.1 236 54.2
Phvul.005G075200 Phaseolus vulgaris HOM05D006561 ORTHO05D008097 7.5e-64 248.1 208 56.7
SGA_v2.0_scaffold34G13795 Striga asiatica HOM05D006561 ORTHO05D008097 1.3e-63 247.3 206 58.7
MBI02_g44100_MAGBIO Magnolia biondii HOM05D006561 ORTHO05D008097 1.6e-61 240.4 224 53.1
MD11G1255800 Malus domestica HOM05D006561 ORTHO05D008097 2.1e-61 240.0 183 62.8
Zm00001eb295840 Zea mays HOM05D006561 ORTHO05D008097 2.7e-61 239.6 243 49.8
HPP92_024567 Vanilla planifolia HOM05D006561 ORTHO05D008097 1.4e-57 227.3 301 43.5
Lj3g0026269 Lotus japonicus HOM05D006561 ORTHO05D008097 8.9e-57 224.6 204 52.9
arahy.Tifrunner.gnm1.ann1.YD6KBQ Arachis hypogaea HOM05D006561 ORTHO05D008097 1.7e-52 210.3 235 48.5
Ah.06g184730 Amaranthus hybridus HOM05D006561 ORTHO05D008097 2.8e-50 203.0 251 45.8
PSO541G4753 Papaver somniferum HOM05D006561 ORTHO05D008097 1.9e-46 190.3 196 51.0
Actinidia12544 Actinidia chinensis HOM05D006561 ORTHO05D008097 1.1e-43 181.0 183 49.7
Actinidia07498 Actinidia chinensis HOM05D006561 ORTHO05D008097 3.3e-43 179.5 123 65.0
Pp3c22_18560 Physcomitrium patens HOM05D006561 ORTHO05D008097 2.8e-42 176.4 247 38.1
QL08p023698 Quercus lobata HOM05D006561 ORTHO05D008097 2.8e-42 176.4 124 67.7
Haze_09400 Corylus avellana HOM05D006561 ORTHO05D008097 3.4e-40 169.5 130 67.7
QL08p023707 Quercus lobata HOM05D006561 ORTHO05D008097 1.2e-37 161.0 131 64.9
Mapoly0096s0048 Marchantia polymorpha HOM05D006561 ORTHO05D008097 1.6e-37 160.6 245 35.5
AagrBONN_evm.TU.Sc2ySwM_228.4556 Anthoceros agrestis HOM05D006561 ORTHO05D008097 3.5e-37 159.5 276 33.0
FAN16G3278 Fragaria x ananassa HOM05D006561 ORTHO05D008097 5.1e-36 155.6 564 25.7
CDE08G0579 Ceratophyllum demersum HOM05D006561 ORTHO05D008097 4.3e-35 152.5 144 51.4
CBR_g861 Chara braunii HOM05D006561 ORTHO05D008097 3.7e-34 149.4 225 35.6
Hma1.2p1_0416F.1_g148400 Hydrangea macrophylla HOM05D006561 ORTHO05D008097 8.1e-34 148.3 167 49.1
SMO143G0268 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 4.9e-31 139.0 218 36.2
SMO265G0056 Selaginella moellendorffii HOM05D006561 ORTHO05D008097 7.1e-30 135.2 182 40.1
arahy.Tifrunner.gnm1.ann1.YKS4T6 Arachis hypogaea HOM05D006561 ORTHO05D008097 2.5e-22 110.2 133 43.6
Nn5g27383 Nelumbo nucifera HOM05D006561 ORTHO05D008097 1.6e-18 97.4 97 52.6
PRCOL_00000682 Prasinoderma coloniale HOM05D006561 ORTHO05D008097 8.2e-18 95.1 236 32.2
Mapoly0066s0041 Marchantia polymorpha HOM05D006561 ORTHO05D008097 6.1e-13 79.0 92 39.1
Pp3c23_10880 Physcomitrium patens HOM05D006561 ORTHO05D008097 7.9e-13 78.6 121 33.9
Nn2g11894 Nelumbo nucifera HOM05D001060 ORTHO05D008097 8.2e-10 68.6 132 37.9
Pp3c20_12000 Physcomitrium patens HOM05D006561 ORTHO05D008097 1.8e-09 67.4 115 33.0
Haze_09398 Corylus avellana HOM05D006561 ORTHO05D008097 6.9e-09 65.5 57 63.2
Haze_09394 Corylus avellana HOM05D006561 ORTHO05D165302 4.5e-08 62.8 130 34.6
Os05g0563500 Oryza sativa ssp. japonica HOM05D006561 ORTHO05D008097 1.3e-07 61.2 83 39.8
Haze_09393 Corylus avellana HOM05D006561 ORTHO05D008097 2.2e-07 60.5 107 39.3
Pp3c23_16570 Physcomitrium patens HOM05D006561 ORTHO05D309072 7.2e-06 55.5 57 42.1


User provided reference genes

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