Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.E03850 Eucalyptus grandis HOM05D006551 ORTHO05D008546 2.8e-148 528.5 250 100.0
Eucgr.E03848 Eucalyptus grandis HOM05D006551 ORTHO05D008546 6.4e-108 394.4 185 99.5
PGR042G3561 Punica granatum HOM05D006551 ORTHO05D008546 2.8e-95 352.4 217 74.2
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 5.8e-93 344.7 227 67.4
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 7.6e-93 344.4 222 67.1
CiPaw.10G082200 Carya illinoinensis HOM05D006551 ORTHO05D008546 1.3e-92 343.6 247 66.0
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.7e-92 343.2 225 67.1
Manes.09G083300 Manihot esculenta HOM05D006551 ORTHO05D008546 1.9e-91 339.7 239 64.9
Sopen04g007100 Solanum pennellii HOM05D006551 ORTHO05D008546 1.9e-91 339.7 245 65.3
Lalb_Chr20g0119561 Lupinus albus HOM05D006551 ORTHO05D008546 2.4e-91 339.3 217 67.7
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 2.4e-91 339.3 233 65.2
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 4.1e-91 338.6 225 66.2
Prupe.4G003400 Prunus persica HOM05D006551 ORTHO05D008546 7.1e-91 337.8 247 63.6
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 1.2e-90 337.0 236 66.1
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 1.6e-90 336.7 223 66.4
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.6e-90 336.7 243 65.0
Dinv15335 Davidia involucrata HOM05D006551 ORTHO05D008546 6.0e-90 334.7 232 66.4
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 7.8e-90 334.3 225 67.1
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 2.3e-89 332.8 248 62.9
VMungo0540G0952 Vigna mungo HOM05D006551 ORTHO05D008546 3.0e-89 332.4 228 65.4
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 5.1e-89 331.6 244 65.2
Sc17g0008010 Simmondsia chinensis HOM05D006551 ORTHO05D008546 6.6e-89 331.3 226 67.3
TWI38G1730 Tripterygium wilfordii HOM05D006551 ORTHO05D008546 8.6e-89 330.9 227 65.6
MSTRG.7126 Avicennia marina HOM05D006551 ORTHO05D008546 1.9e-88 329.7 251 61.8
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.9e-88 329.7 236 66.1
Potri.006G004500 Populus trichocarpa HOM05D006551 ORTHO05D008546 1.9e-88 329.7 223 68.6
FvH4_3g00300 Fragaria vesca HOM05D006551 ORTHO05D008546 4.3e-88 328.6 246 63.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 4.3e-88 328.6 249 63.1
Cfa000032 Carpinus fangiana HOM05D006551 ORTHO05D008546 5.6e-88 328.2 253 61.7
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 9.6e-88 327.4 229 65.9
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.2e-87 327.0 225 66.7
RcHm_v2.0_Chr5g0000451 Rosa chinensis HOM05D006551 ORTHO05D008546 1.2e-87 327.0 246 62.6
THA.LOC104815473 Tarenaya hassleriana HOM05D006551 ORTHO05D008546 1.2e-87 327.0 217 68.7
Aa31LG2G12400 Aethionema arabicum HOM05D006551 ORTHO05D008546 2.1e-87 326.2 232 65.1
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 1.4e-86 323.6 234 64.1
Sabra06G0003800 Salix brachista HOM05D006551 ORTHO05D008546 1.4e-86 323.6 222 67.1
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 5.2e-86 321.6 220 65.0
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 6.9e-86 321.2 218 65.6
Migut.M01446 Erythranthe guttata HOM05D006551 ORTHO05D008546 1.2e-85 320.5 241 61.8
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 2.6e-85 319.3 218 65.6
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 5.8e-85 318.2 235 62.6
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 1.3e-84 317.0 222 64.9
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 1.3e-84 317.0 222 64.9
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 1.3e-84 317.0 222 64.9
SalBow8G1397 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-84 316.6 259 58.3
SalBow8G2449 Salvia bowleyana HOM05D006551 ORTHO05D008546 1.7e-84 316.6 259 58.3
BraA09t41161Z Brassica rapa HOM05D006551 ORTHO05D008546 2.2e-84 316.2 221 64.7
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 2.9e-84 315.8 242 62.0
Aqoxy1G04265 Aquilegia oxysepala HOM05D006551 ORTHO05D008546 3.8e-84 315.5 232 61.6
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 3.8e-84 315.5 203 70.4
CARHR113490 Cardamine hirsuta HOM05D006551 ORTHO05D008546 4.9e-84 315.1 234 62.8
Cc09_g00290 Coffea canephora HOM05D006551 ORTHO05D008546 4.9e-84 315.1 211 68.2
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.1e-83 313.9 210 66.7
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 1.9e-83 313.2 223 61.9
PSO210G1263 Papaver somniferum HOM05D006551 ORTHO05D008546 1.9e-83 313.2 220 62.7
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 3.2e-83 312.4 227 63.4
HPP92_018202 Vanilla planifolia HOM05D006551 ORTHO05D008546 5.4e-83 311.6 249 59.0
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 9.3e-83 310.8 223 61.4
MELO3C008006.2 Cucumis melo HOM05D006551 ORTHO05D008546 1.2e-82 310.5 237 59.9
Lsat_1_v5_gn_7_12961 Lactuca sativa HOM05D006551 ORTHO05D008546 1.2e-82 310.5 245 58.4
Peaxi162Scf00811g00222 Petunia axillaris HOM05D006551 ORTHO05D008546 1.2e-82 310.5 200 70.0
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.6e-82 310.1 224 63.8
COL.COLO4_31943 Corchorus olitorius HOM05D000879 ORTHO05D002864 2.1e-82 309.7 222 65.8
Hund08692 Selenicereus undatus HOM05D006551 ORTHO05D008546 2.1e-82 309.7 257 58.0
Gohir.A10G007900 Gossypium hirsutum HOM05D006551 ORTHO05D008546 3.5e-82 308.9 227 62.6
PSO210G0886 Papaver somniferum HOM05D006551 ORTHO05D008546 3.5e-82 308.9 220 61.4
Ah.14g087400 Amaranthus hybridus HOM05D006551 ORTHO05D008546 4.6e-82 308.5 227 61.2
EL10Ac8g20269 Beta vulgaris HOM05D006551 ORTHO05D008546 4.6e-82 308.5 236 61.4
Zm00001eb380830 Zea mays HOM05D006551 ORTHO05D008546 1.3e-81 307.0 256 58.6
Eucgr.L00150 Eucalyptus grandis HOM05D006551 ORTHO05D008546 1.7e-81 306.6 206 67.0
MD10G1339500 Malus domestica HOM05D006551 ORTHO05D008546 5.1e-81 305.1 251 59.4
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 6.6e-81 304.7 241 60.2
ECA248G0604 Erigeron canadensis HOM05D006551 ORTHO05D008546 3.3e-80 302.4 222 59.9
Lj1C1247T0 Lonicera japonica HOM05D006551 ORTHO05D008546 1.3e-79 300.4 217 64.5
Nitab4.5_0006294g0080 Nicotiana tabacum HOM05D006551 ORTHO05D008546 1.6e-79 300.1 210 66.2
CsaV3_6G048230 Cucumis sativus L. HOM05D006551 ORTHO05D008546 2.1e-79 299.7 237 58.6
AUR62021809 Chenopodium quinoa HOM05D006551 ORTHO05D008546 2.8e-79 299.3 218 62.8
Sed0011139 Sechium edule HOM05D006551 ORTHO05D008546 6.2e-79 298.1 238 58.4
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 1.8e-78 296.6 237 57.4
unitig_37.g12177 Utricularia gibba HOM05D006551 ORTHO05D008546 1.5e-77 293.5 248 56.0
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 5.8e-77 291.6 242 57.9
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 9.9e-77 290.8 242 57.0
HanXRQChr05g0129031 Helianthus annuus HOM05D006551 ORTHO05D008546 9.9e-77 290.8 216 61.1
DCAR_002245 Daucus carota HOM05D006551 ORTHO05D008546 4.9e-76 288.5 221 59.7
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 5.3e-70 268.5 191 64.4
Oeu025969.1 Olea europaea HOM05D006551 ORTHO05D008546 6.9e-70 268.1 212 58.5
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 9.0e-70 267.7 166 73.5
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 3.5e-66 255.8 184 60.9
PGR004G0828 Punica granatum HOM05D006551 ORTHO05D008546 1.3e-65 253.8 190 61.6
Solyc04g015080.4 Solanum lycopersicum HOM05D006551 ORTHO05D008546 1.5e-64 250.4 170 64.7
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 1.5e-64 250.4 170 68.8
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.3e-64 249.2 168 70.2
Haze_07021 Corylus avellana HOM05D006551 ORTHO05D008546 6.9e-62 241.5 248 50.8
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 7.6e-61 238.0 179 60.9
AUR62012856 Chenopodium quinoa HOM05D006551 ORTHO05D008546 1.1e-59 234.2 169 66.9
ATR0751G145 Amborella trichopoda HOM05D006551 ORTHO05D008546 3.9e-57 225.7 164 64.6
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 8.7e-57 224.6 152 63.8
AagrBONN_evm.TU.Sc2ySwM_362.1805 Anthoceros agrestis HOM05D006551 ORTHO05D008546 2.8e-55 219.5 298 40.9
AagrBONN_evm.TU.Sc2ySwM_369.541 Anthoceros agrestis HOM05D006551 ORTHO05D008546 5.3e-54 215.3 250 45.6
Peaxi162Scf00827g00057 Petunia axillaris HOM05D006551 ORTHO05D008546 9.3e-51 204.5 166 63.3
SEGI_23146 Sequoiadendron giganteum HOM05D006551 ORTHO05D008546 2.5e-48 196.4 226 45.6
SHI31451 Sapria himalayana HOM05D006551 ORTHO05D008546 4.8e-39 165.6 114 70.2
CBR_g3891 Chara braunii HOM05D006551 ORTHO05D008546 5.5e-35 152.1 153 44.4
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 2.7e-34 149.8 118 50.8
Glyma.15G120500 Glycine max HOM05D006551 ORTHO05D008546 9.7e-32 141.4 109 66.1
Sed0010073 Sechium edule HOM05D006551 ORTHO05D008546 2.8e-31 139.8 184 38.6
SHI31456 Sapria himalayana HOM05D006551 ORTHO05D008546 4.7e-26 122.5 110 47.3
VMungo0540G1474 Vigna mungo HOM05D006551 ORTHO05D008546 8.8e-17 91.7 60 76.7
Hma1.2p1_1322F.1_g275500 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 3.4e-16 89.7 59 76.3
Os06g0286310 Oryza sativa ssp. japonica HOM05D006551 ORTHO05D008546 1.7e-15 87.4 85 49.4
Cfa024106 Carpinus fangiana HOM05D006551 ORTHO05D008546 8.3e-15 85.1 116 41.4
Sp4g01310 Schrenkiella parvula HOM05D006551 ORTHO05D008546 3.5e-13 79.7 50 56.0
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 5.0e-12 75.9 96 44.8
Pp3c2_11520 Physcomitrium patens HOM05D006551 ORTHO05D008546 2.5e-11 73.6 117 35.0
VMungo0540G1416 Vigna mungo HOM05D000555 ORTHO05D001906 2.5e-11 73.6 52 50.0
PRCOL_00003886 Prasinoderma coloniale HOM05D006551 ORTHO05D044110 5.2e-09 65.9 177 27.7
HanXRQChr17g0567191 Helianthus annuus HOM05D000289 ORTHO05D000208 6.8e-09 65.5 97 37.1
PRCOL_00002494 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.2e-08 64.7 116 34.5
PRCOL_00002998 Prasinoderma coloniale HOM05D006551 ORTHO05D008546 1.4e-06 57.8 145 27.6
Cfa024972 Carpinus fangiana HOM05D006551 ORTHO05D043702 1.8e-06 57.4 133 33.1


User provided reference genes

Program Settings