Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 2.9e-164 582.0 337 100.0
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 6.5e-124 448.0 334 79.0
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 9.4e-123 444.1 333 77.5
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.0e-121 440.7 336 78.3
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.0e-121 440.7 333 76.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.5e-120 436.8 333 76.9
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 3.4e-120 435.6 334 77.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 7.5e-120 434.5 335 76.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-119 433.7 334 77.8
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 3.7e-119 432.2 331 77.6
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.9e-119 431.8 335 76.1
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-118 430.6 334 76.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.1e-118 430.6 334 76.0
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 1.8e-118 429.9 335 76.1
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.4e-118 429.5 334 77.2
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.4e-118 429.5 334 76.0
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 5.4e-118 428.3 336 75.6
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.1e-118 427.6 334 75.7
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.2e-117 427.2 336 75.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.6e-117 426.8 334 77.8
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.7e-117 426.0 333 76.3
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 4.5e-117 425.2 335 74.9
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 7.7e-117 424.5 334 75.7
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.7e-116 423.3 337 75.1
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 5.0e-116 421.8 321 77.6
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.9e-115 419.9 334 75.7
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.9e-115 419.9 291 82.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 3.3e-115 419.1 334 74.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 4.2e-115 418.7 335 75.2
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 4.2e-115 418.7 304 81.9
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.2e-115 418.7 333 74.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 5.6e-115 418.3 336 74.1
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 7.2e-115 417.9 336 76.8
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.2e-115 417.9 304 82.2
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.6e-114 416.8 334 71.9
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.8e-114 416.0 335 74.9
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.8e-114 416.0 308 80.2
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.8e-114 416.0 304 81.6
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.8e-114 416.0 336 76.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.8e-114 416.0 335 73.7
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 3.6e-114 415.6 337 76.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 4.7e-114 415.2 306 80.7
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.7e-114 415.2 334 74.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.1e-114 414.8 334 73.7
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.0e-114 414.5 334 73.1
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.4e-113 413.7 339 74.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.0e-113 412.5 339 72.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 8.9e-113 411.0 312 77.9
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.9e-113 411.0 334 71.9
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 8.9e-113 411.0 334 72.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.2e-112 410.6 334 72.5
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-112 409.8 336 73.2
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.6e-112 409.5 340 72.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 3.4e-112 409.1 334 72.2
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 4.4e-112 408.7 339 74.9
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 4.4e-112 408.7 345 72.2
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 9.8e-112 407.5 335 70.4
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 9.8e-112 407.5 330 73.9
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 9.8e-112 407.5 336 71.1
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 9.8e-112 407.5 339 70.8
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.3e-111 407.1 338 72.2
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.3e-111 407.1 334 72.2
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.3e-111 407.1 338 71.0
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.7e-111 406.8 337 71.5
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 2.2e-111 406.4 347 70.3
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 4.9e-111 405.2 337 71.8
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 4.9e-111 405.2 337 71.8
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.9e-111 405.2 341 71.6
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 1.1e-110 404.1 335 71.0
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.1e-110 404.1 330 74.5
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.1e-110 404.1 309 79.0
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.4e-110 403.7 335 70.7
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.4e-110 403.7 338 72.2
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 1.4e-110 403.7 334 71.9
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.8e-110 403.3 336 71.1
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.8e-110 403.3 334 72.5
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-110 403.3 334 72.5
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.2e-110 402.5 329 72.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 4.1e-110 402.1 335 71.9
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 5.4e-110 401.7 334 70.7
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 9.2e-110 401.0 332 73.2
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.6e-109 400.2 336 70.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 3.5e-109 399.1 286 77.6
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 4.6e-109 398.7 334 70.4
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.6e-109 398.7 331 72.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 4.6e-109 398.7 334 71.6
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.8e-109 397.9 333 71.5
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.3e-108 396.4 294 77.9
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.3e-108 396.4 337 69.1
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 2.9e-108 396.0 334 69.8
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.9e-108 395.6 331 72.2
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 3.9e-108 395.6 334 70.1
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 3.9e-108 395.6 335 69.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.0e-108 395.2 333 71.2
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 5.0e-108 395.2 337 72.1
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 6.6e-108 394.8 310 76.1
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.1e-107 394.0 319 72.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.1e-107 394.0 304 75.0
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.5e-107 393.7 332 71.1
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.5e-107 393.7 332 71.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.5e-107 393.7 336 71.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 1.9e-107 393.3 290 80.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.9e-107 393.3 329 70.5
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 2.5e-107 392.9 331 71.3
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.3e-107 392.1 350 70.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 9.5e-107 391.0 288 78.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 9.5e-107 391.0 334 70.4
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-106 390.6 332 70.8
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.2e-106 390.6 296 78.4
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 6.2e-106 388.3 332 70.5
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 6.2e-106 388.3 332 70.5
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 8.0e-106 387.9 335 69.0
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 8.0e-106 387.9 318 72.6
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.0e-105 387.5 336 69.6
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.0e-105 387.5 336 69.6
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.3e-105 386.3 254 85.8
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.3e-105 386.3 332 68.7
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 4.0e-105 385.6 331 71.6
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 6.8e-105 384.8 281 79.0
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.2e-104 384.0 308 73.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.2e-104 384.0 331 71.3
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 3.4e-104 382.5 334 70.1
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.9e-103 379.4 324 70.7
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.9e-103 379.4 358 65.1
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.4e-103 378.3 251 85.3
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.9e-102 376.7 282 80.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.1e-102 375.6 316 71.5
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.5e-101 372.5 311 65.3
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 4.6e-101 372.1 326 68.7
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 1.3e-100 370.5 336 69.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.2e-98 364.0 311 69.5
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.6e-98 363.6 250 73.2
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-97 360.1 310 70.0
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 3.1e-97 359.4 309 71.2
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 2.0e-96 356.7 255 81.6
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 5.8e-96 355.1 292 70.2
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.3e-95 354.0 231 89.6
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.2e-95 353.2 309 68.9
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 5.4e-94 348.6 268 73.1
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 2.1e-93 346.7 313 70.6
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 3.5e-93 345.9 231 86.1
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 6.0e-93 345.1 270 71.5
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 5.6e-91 338.6 330 62.7
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 4.7e-90 335.5 336 64.6
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-88 330.9 221 87.8
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.4e-86 322.0 339 53.4
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.7e-84 317.0 306 67.0
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.7e-84 317.0 306 67.0
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 4.3e-83 312.4 248 71.4
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.0e-80 303.5 274 60.9
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 4.4e-80 302.4 368 56.5
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.8e-80 302.0 311 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 9.3e-78 294.7 320 53.4
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 3.3e-75 286.2 250 56.8
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 2.8e-74 283.1 196 85.2
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 6.9e-73 278.5 241 75.5
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 9.0e-73 278.1 251 72.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.7e-71 273.9 272 68.0
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.2e-71 273.5 207 79.7
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.4e-70 270.8 295 53.9
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 5.1e-60 235.7 259 47.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.2e-54 216.5 149 72.5
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.2e-54 216.1 246 51.6
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.6e-53 214.2 124 83.9
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 4.3e-51 206.1 125 80.0
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.2e-47 193.7 149 67.1
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 6.7e-44 182.2 200 66.0
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.5e-40 171.0 229 58.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.0e-40 170.6 154 61.7
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 3.4e-32 143.3 133 60.2
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.5e-32 142.9 255 38.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.0e-31 141.7 145 56.6
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.2e-29 134.8 80 77.5
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.6e-29 134.4 108 74.1
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.7e-23 114.4 80 67.5
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 9.7e-19 98.6 188 46.8
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.3e-15 88.2 107 61.7
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.9e-15 87.0 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.5e-14 84.7 122 46.7
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 7.2e-14 82.4 189 44.4
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-11 74.3 93 45.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 9.5e-06 55.5 266 25.2


User provided reference genes

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