Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 6.4e-235 817.0 405 100.0
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 3.8e-142 508.8 404 64.6
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 8.4e-142 507.7 386 65.3
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 6.9e-136 488.0 409 61.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.2e-133 479.2 407 61.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.6e-132 476.9 407 59.2
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.6e-132 476.9 407 57.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.1e-132 476.5 410 58.5
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 4.6e-132 475.3 407 59.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 3.9e-131 472.2 409 59.4
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 4.3e-130 468.8 428 57.5
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 7.3e-130 468.0 408 58.3
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.6e-129 466.8 405 58.0
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.6e-129 465.7 405 58.8
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.4e-128 463.0 407 58.0
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 5.3e-128 461.8 378 59.8
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.5e-127 460.3 335 66.0
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 5.8e-127 458.4 331 64.7
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 9.9e-127 457.6 406 57.4
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.3e-126 457.2 405 59.3
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.9e-126 455.3 408 57.6
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.2e-124 450.7 382 57.9
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 7.9e-124 448.0 407 58.2
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 6.7e-123 444.9 414 54.1
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 6.7e-123 444.9 341 62.8
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 1.5e-122 443.7 388 55.7
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 2.1e-121 439.9 414 53.9
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.8e-121 439.5 327 63.0
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 3.7e-121 439.1 367 58.9
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 1.1e-120 437.6 348 60.6
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 4.0e-120 435.6 314 64.6
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 5.3e-120 435.3 325 62.5
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.9e-120 434.9 361 58.2
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 7.6e-119 431.4 403 58.1
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 2.2e-118 429.9 412 55.1
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 4.9e-118 428.7 297 69.0
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 7.1e-117 424.9 339 61.4
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.7e-116 422.9 423 53.2
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 3.5e-116 422.5 331 58.9
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.5e-116 422.5 334 61.7
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.3e-115 420.6 268 71.3
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.0e-115 419.5 330 62.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 5.1e-115 418.7 366 57.4
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 6.7e-115 418.3 408 55.4
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 6.7e-115 418.3 342 58.8
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 8.7e-115 417.9 363 57.0
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.5e-114 417.2 268 72.8
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.5e-114 417.2 409 52.3
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 9.6e-114 414.5 243 76.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.8e-113 412.9 333 59.2
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.8e-113 412.9 243 75.7
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.1e-112 411.0 344 57.8
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 1.4e-112 410.6 333 59.5
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 1.8e-112 410.2 414 52.7
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 4.0e-112 409.1 310 61.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 6.9e-112 408.3 336 61.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 9.0e-112 407.9 350 61.4
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-111 407.5 344 57.6
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.7e-110 403.7 384 52.9
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 4.9e-110 402.1 417 54.4
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.1e-109 401.0 417 52.8
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 7.1e-109 398.3 414 50.7
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 2.1e-108 396.7 406 53.0
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 2.1e-108 396.7 404 53.2
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 6.0e-108 395.2 369 56.1
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 7.9e-108 394.8 381 56.2
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.3e-107 394.0 416 52.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 3.0e-107 392.9 337 59.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 3.9e-107 392.5 409 51.8
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 7.4e-106 388.3 307 58.0
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 7.4e-106 388.3 323 56.3
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 4.8e-105 385.6 402 50.2
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 6.3e-105 385.2 354 55.4
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 6.3e-105 385.2 331 56.2
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 1.1e-104 384.4 329 57.4
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.0e-104 381.3 371 55.5
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.2e-103 380.9 315 58.7
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 3.4e-103 379.4 365 53.4
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 3.4e-103 379.4 282 62.8
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 1.7e-102 377.1 406 50.7
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.4e-101 374.0 405 49.6
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.4e-101 374.0 369 53.1
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.4e-101 374.0 369 53.1
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.4e-101 374.0 333 56.5
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 2.5e-101 373.2 412 50.5
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 3.2e-101 372.9 412 50.5
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.2e-101 372.9 417 51.1
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 5.5e-101 372.1 418 50.0
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 9.4e-101 371.3 315 57.5
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 1.0e-99 367.9 406 49.3
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 1.0e-99 367.9 408 47.8
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.0e-99 367.9 391 49.1
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 8.8e-99 364.8 437 47.1
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-98 364.0 260 65.4
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 5.7e-98 362.1 440 46.8
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.2e-94 350.1 410 48.0
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.4e-93 347.4 414 48.3
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.2e-92 344.4 301 56.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.8e-91 340.5 404 49.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.1e-90 337.8 409 47.4
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 9.7e-90 334.7 281 58.7
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.2e-87 327.8 338 53.0
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 3.4e-87 326.2 428 42.5
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.0e-86 324.7 409 45.2
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 8.5e-86 321.6 263 57.4
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 2.5e-85 320.1 319 52.0
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 5.7e-82 308.9 318 51.3
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.7e-81 307.4 316 50.3
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 8.2e-81 305.1 405 44.7
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-80 304.3 376 47.1
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 2.2e-78 297.0 200 68.5
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.2e-78 297.0 369 44.7
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.8e-75 287.3 255 55.3
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.8e-73 279.3 303 51.2
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 3.5e-71 273.1 267 51.7
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 5.0e-70 269.2 239 54.8
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 1.9e-69 267.3 238 57.1
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.9e-69 267.3 413 38.0
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.2e-69 266.5 342 47.7
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 3.0e-67 260.0 389 39.6
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.5e-66 257.7 345 43.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.1e-64 248.4 368 40.5
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 7.2e-61 238.8 184 62.0
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 8.0e-60 235.3 271 48.7
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 9.2e-56 221.9 315 43.2
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 2.2e-49 200.7 224 50.9
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-48 198.4 133 67.7
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.4e-48 198.0 220 49.5
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 7.0e-40 169.1 121 66.1
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 4.6e-39 166.4 184 43.5
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 5.8e-34 149.4 147 52.4
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 2.9e-25 120.6 106 50.9
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 4.2e-24 116.7 352 29.5
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.1e-23 114.4 159 41.5
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 1.1e-19 102.1 72 65.3
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.4e-19 101.7 74 63.5
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.7e-17 94.7 114 39.5
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 8.4e-17 92.4 65 58.5
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 2.4e-16 90.9 67 55.2
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 7.3e-13 79.3 184 34.8
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 3.8e-09 67.0 151 35.1
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 4.9e-09 66.6 102 38.2
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 5.4e-08 63.2 147 34.7
BcaC02g09524 Brassica carinata HOM05D029228 ORTHO05D027443 7.9e-07 59.3 74 43.2
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 5.1e-06 56.6 123 31.7
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 8.7e-06 55.8 156 34.0


User provided reference genes

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