Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 3482.2 1886 100.0
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2412.1 1924 69.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2390.5 1901 70.4
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2359.7 1904 70.2
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2354.7 1908 70.4
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2345.5 1924 69.1
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2340.8 1927 69.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2338.1 1930 68.6
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2333.1 1915 69.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2328.9 1926 68.5
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2325.4 1813 69.8
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2324.7 1909 69.7
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2317.0 1919 68.0
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2314.7 1922 67.6
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2314.3 1919 67.9
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2313.9 1905 69.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2309.3 1949 68.0
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2307.7 1812 69.5
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2295.4 1787 69.0
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2287.3 1931 67.7
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2283.1 1232 95.5
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2280.8 1795 69.2
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2280.8 1883 68.8
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2276.5 1804 68.6
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2275.4 1925 67.5
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2274.6 1923 68.2
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2272.3 1910 67.6
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2265.0 1912 68.0
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2250.3 1935 67.2
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2248.4 1791 69.0
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2248.4 1961 66.0
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2246.5 1921 66.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2241.1 1826 66.8
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2239.9 1937 66.2
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2236.1 1910 66.6
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2232.2 1905 67.0
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2231.4 1905 66.9
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2229.1 1775 68.1
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2227.6 1953 65.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2225.3 2022 64.1
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2221.8 1810 67.5
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2220.7 1922 64.4
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2214.5 1922 66.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2201.8 1914 67.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2200.2 1917 65.9
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2179.1 1876 65.7
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2174.1 1930 65.3
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2167.9 1932 65.3
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2163.3 1907 65.0
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2160.2 1930 64.5
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2158.6 1907 64.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2154.4 1906 64.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2152.1 1799 66.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2149.4 1799 65.4
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2147.9 1780 69.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2132.1 1938 63.9
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2130.5 1934 64.6
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2122.4 1930 63.4
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2113.6 1919 63.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2105.9 1930 63.2
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2105.9 1911 64.3
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2105.5 1924 62.8
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2104.3 1922 62.1
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2095.1 1906 64.2
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2088.9 1888 65.0
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2088.2 1899 64.1
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2081.2 1930 62.8
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2071.6 1794 64.2
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2060.0 1801 64.5
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2057.7 1898 64.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2055.8 1803 63.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2046.2 1833 61.3
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2038.5 1792 63.3
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2026.9 1895 62.7
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2020.7 1783 62.8
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2010.7 1924 62.7
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1985.3 1844 61.1
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1939.9 1902 61.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1934.8 1946 59.5
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1924.4 1694 64.0
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1924.1 1847 59.6
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1919.1 1800 59.3
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1913.3 1800 59.9
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1908.3 1803 59.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1899.4 1823 58.5
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1865.5 1928 56.2
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1855.1 1851 57.2
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1852.0 1909 58.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1847.4 1840 57.7
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1845.1 1869 56.3
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1829.3 1846 56.6
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1828.9 1846 56.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1822.8 1847 56.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1822.0 1840 57.5
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1816.2 1847 56.6
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1812.7 1698 60.5
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1811.6 1904 57.4
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1800.8 1843 56.1
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1798.1 1841 56.4
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1781.1 1844 56.1
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1781.1 1856 55.9
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1780.8 1856 55.9
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1772.3 1840 56.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1772.3 1856 55.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1772.3 1856 55.4
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1728.4 1846 55.6
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1677.5 1934 53.7
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1609.3 1814 51.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1510.7 1900 48.5
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1510.7 1900 48.5
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1484.9 1857 49.4
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1481.1 1944 48.3
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1462.6 1346 59.7
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1440.6 1471 58.3
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1421.4 1223 66.6
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1404.0 1933 48.4
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1396.3 1225 65.6
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1385.9 1925 49.2
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1277.3 1076 68.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1275.0 1467 53.7
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1220.7 1779 44.2
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1125.2 1035 64.7
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1113.2 1336 52.4
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-305 1053.9 911 64.0
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 6.6e-290 1001.9 864 65.4
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 4.7e-288 995.7 1633 42.6
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 9.5e-281 971.5 825 67.6
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 6.2e-272 942.2 1429 45.3
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 7.3e-257 892.1 1790 36.3
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.1e-252 878.2 790 63.0
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.9e-250 869.8 876 55.6
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.1e-203 713.0 613 69.2
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.7e-192 677.2 654 57.0
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.6e-182 645.2 648 52.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 8.6e-181 639.4 716 52.0
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 2.0e-174 618.2 498 65.7
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.1e-164 585.9 625 55.2
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.6e-156 557.0 453 71.7
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.8e-145 520.4 524 62.6
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.7e-141 506.5 524 61.8
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 6.9e-114 417.2 342 65.5
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 4.2e-111 407.9 423 56.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 6.1e-110 404.1 1264 28.2
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.1e-82 313.5 649 35.0
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 3.5e-81 308.5 2071 22.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.5e-79 302.4 863 32.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-76 293.5 468 40.0
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-70 272.7 225 69.8
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 3.0e-69 268.9 405 44.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.2e-68 266.9 273 72.5
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.4e-66 259.2 380 42.4
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 7.3e-63 247.7 198 71.7
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.4e-50 206.1 188 58.5
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 5.1e-48 198.4 232 53.4
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 6.6e-40 171.4 189 74.6
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 7.1e-26 124.8 209 45.0
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 5.6e-15 88.6 58 69.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.0e-13 82.4 50 68.0
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 2.9e-11 76.3 58 62.1
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 4.2e-10 72.4 129 71.3
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 9.3e-10 71.2 92 47.8
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.3e-08 67.4 33 84.8
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.9e-07 63.5 146 32.2


User provided reference genes

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