Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03694 Eucalyptus grandis HOM05D001054 ORTHO05D026867 5.8e-55 217.2 104 100.0
Eucgr.C03692 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.5e-50 202.6 104 93.3
Eucgr.C03920 Eucalyptus grandis HOM05D001054 ORTHO05D007110 1.5e-50 202.6 104 93.3
Manes.13G113500 Manihot esculenta HOM05D001054 ORTHO05D007110 2.9e-46 188.3 102 85.3
Duzib264G0621 Durio zibethinus HOM05D001054 ORTHO05D007110 1.1e-45 186.4 102 83.3
Lj7C88G8 Lonicera japonica HOM05D001054 ORTHO05D007110 1.1e-45 186.4 103 83.5
CANSAT01G2549 Cannabis sativa HOM05D001054 ORTHO05D007110 2.4e-45 185.3 102 84.3
TWI09G0178 Tripterygium wilfordii HOM05D001054 ORTHO05D007110 2.4e-45 185.3 102 83.3
SGA_v2.0_scaffold72G24093 Striga asiatica HOM05D001054 ORTHO05D007110 3.2e-45 184.9 103 80.6
vmacro05387 Vaccinium macrocarpon HOM05D001054 ORTHO05D007110 3.2e-45 184.9 103 82.5
Nn7g37208 Nelumbo nucifera HOM05D001054 ORTHO05D007110 7.1e-45 183.7 102 82.4
Gohir.D12G073300 Gossypium hirsutum HOM05D001054 ORTHO05D007110 9.3e-45 183.3 102 81.4
Prupe.6G223800 Prunus persica HOM05D001054 ORTHO05D007110 9.3e-45 183.3 102 83.3
BcaNung03665 Brassica carinata HOM05D001054 ORTHO05D007110 1.2e-44 183.0 104 82.7
C01p01620 Brassica napus HOM05D001054 ORTHO05D007110 1.2e-44 183.0 104 82.7
Cpa.g.sc6.46 Carica papaya HOM05D001054 ORTHO05D007110 1.6e-44 182.6 102 81.4
CiPaw.01G007000 Carya illinoinensis HOM05D001054 ORTHO05D007110 1.6e-44 182.6 102 80.4
Thecc.01G069100 Theobroma cacao HOM05D001054 ORTHO05D007110 1.6e-44 182.6 102 81.4
TAR625G0225 Trochodendron aralioides HOM05D001054 ORTHO05D007110 2.1e-44 182.2 102 80.4
Rhsim10G0102900 Rhododendron simsii HOM05D001054 ORTHO05D007110 2.7e-44 181.8 103 81.6
PSO541G5579 Papaver somniferum HOM05D001054 ORTHO05D007110 3.5e-44 181.4 102 80.4
PSO675G2247 Papaver somniferum HOM05D001054 ORTHO05D007110 3.5e-44 181.4 102 80.4
GSVIVG01000148001 Vitis vinifera HOM05D001054 ORTHO05D007110 3.5e-44 181.4 103 80.6
Sabra07G0046600 Salix brachista HOM05D001054 ORTHO05D007110 4.6e-44 181.0 102 80.4
A01p01450 Brassica napus HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 81.4
BolC1t00157H Brassica oleracea HOM05D001054 ORTHO05D007110 6.0e-44 180.6 103 81.6
BraA01t00139Z Brassica rapa HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 81.4
CSS0024742 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
Carub.0007s0278 Capsella rubella HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 81.4
Lsat_1_v5_gn_2_83701 Lactuca sativa HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
MD15G1293700 Malus domestica HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 81.4
Sc16g0004970 Simmondsia chinensis HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
Solyc10g080040.3 Solanum lycopersicum HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
Sopen10g030650 Solanum pennellii HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
PGSC0003DMG400023692 Solanum tuberosum HOM05D001054 ORTHO05D007110 6.0e-44 180.6 102 80.4
AT4G37510 Arabidopsis thaliana HOM05D001054 ORTHO05D007110 7.9e-44 180.3 102 80.4
MSTRG.23690 Avicennia marina HOM05D001054 ORTHO05D007110 7.9e-44 180.3 102 79.4
Thhalv10024858m.g Eutrema salsugineum HOM05D001054 ORTHO05D007110 7.9e-44 180.3 102 80.4
Gorai.008G080600 Gossypium raimondii HOM05D001054 ORTHO05D007110 7.9e-44 180.3 102 80.4
Sp7g35190 Schrenkiella parvula HOM05D001054 ORTHO05D007110 7.9e-44 180.3 102 80.4
BcaNung05084 Brassica carinata HOM05D001054 ORTHO05D007110 1.3e-43 179.5 104 79.8
CARHR245910 Cardamine hirsuta HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 80.4
DCAR_010834 Daucus carota HOM05D001054 ORTHO05D007110 1.3e-43 179.5 104 78.8
FvH4_1g17270 Fragaria vesca HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 82.4
FAN19G1445 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 82.4
FAN26G1436 Fragaria x ananassa HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 82.4
Oeu013280.1 Olea europaea HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 79.4
RcHm_v2.0_Chr2g0107461 Rosa chinensis HOM05D001054 ORTHO05D007110 1.3e-43 179.5 102 82.4
AL7G13250 Arabidopsis lyrata HOM05D001054 ORTHO05D007110 1.7e-43 179.1 102 80.4
Migut.H00367 Erythranthe guttata HOM05D001054 ORTHO05D007110 1.7e-43 179.1 102 79.4
HanXRQChr14g0441861 Helianthus annuus HOM05D001054 ORTHO05D007110 1.7e-43 179.1 102 79.4
THA.LOC104807624 Tarenaya hassleriana HOM05D001054 ORTHO05D007110 1.7e-43 179.1 100 82.0
Aa31LG6G14390 Aethionema arabicum HOM05D001054 ORTHO05D007110 2.3e-43 178.7 102 79.4
Ciclev10025341m.g Citrus clementina HOM05D001054 ORTHO05D007110 2.3e-43 178.7 102 77.5
Potri.007G053000 Populus trichocarpa HOM05D001054 ORTHO05D007110 3.0e-43 178.3 102 78.4
Cfa004102 Carpinus fangiana HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 80.4
ClCG01G017380 Citrullus lanatus HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 80.4
MELO3C007616.2 Cucumis melo HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 80.4
FAN23G1327 Fragaria x ananassa HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 81.4
Hma1.2p1_0017F.1_g012090 Hydrangea macrophylla HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 79.4
Nitab4.5_0002331g0050 Nicotiana tabacum HOM05D001054 ORTHO05D007110 3.9e-43 177.9 102 78.4
Cc07_g06840 Coffea canephora HOM05D001054 ORTHO05D007110 5.1e-43 177.6 102 78.4
Haze_15309 Corylus avellana HOM05D001054 ORTHO05D007110 5.1e-43 177.6 102 79.4
Os01g0810100 Oryza sativa ssp. japonica HOM05D001054 ORTHO05D007110 5.1e-43 177.6 102 76.5
Peaxi162Scf00365g00936 Petunia axillaris HOM05D001054 ORTHO05D007110 5.1e-43 177.6 100 80.0
PGR004G0129 Punica granatum HOM05D001054 ORTHO05D007110 5.1e-43 177.6 102 78.4
Atru.chr3.165 Acer truncatum HOM05D001054 ORTHO05D007110 8.7e-43 176.8 102 78.4
Atru.chr3.194 Acer truncatum HOM05D001054 ORTHO05D007110 8.7e-43 176.8 102 78.4
SalBow6G1211 Salvia bowleyana HOM05D001054 ORTHO05D007110 8.7e-43 176.8 102 78.4
Sed0024674 Sechium edule HOM05D001054 ORTHO05D007110 1.1e-42 176.4 102 78.4
Nitab4.5_0006689g0010 Nicotiana tabacum HOM05D001054 ORTHO05D007110 1.5e-42 176.0 102 77.5
EL10Ac6g15648 Beta vulgaris HOM05D001054 ORTHO05D007110 1.9e-42 175.6 102 78.4
Hund13932 Selenicereus undatus HOM05D001054 ORTHO05D007110 1.9e-42 175.6 102 80.4
TAR628G0943 Trochodendron aralioides HOM05D001054 ORTHO05D007110 1.9e-42 175.6 102 75.5
AUR62003982 Chenopodium quinoa HOM05D001054 ORTHO05D007110 3.3e-42 174.9 102 79.4
AUR62040267 Chenopodium quinoa HOM05D001054 ORTHO05D007110 3.3e-42 174.9 102 79.4
Sed0014779 Sechium edule HOM05D001054 ORTHO05D007110 3.3e-42 174.9 102 78.4
COL.COLO4_11542 Corchorus olitorius HOM05D001054 ORTHO05D007110 7.3e-42 173.7 102 76.5
MBI19_g10811_MAGBIO Magnolia biondii HOM05D001054 ORTHO05D007110 7.3e-42 173.7 102 76.5
Aqoxy2G00045 Aquilegia oxysepala HOM05D001054 ORTHO05D007110 1.3e-41 172.9 102 77.5
arahy.Tifrunner.gnm1.ann1.S94KHE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-41 172.6 102 75.5
arahy.Tifrunner.gnm1.ann1.UKA06W Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-41 172.6 102 75.5
arahy.Tifrunner.gnm1.ann1.V4EKGG Arachis hypogaea HOM05D001054 ORTHO05D007110 1.6e-41 172.6 102 75.5
CsaV3_6G043910 Cucumis sativus L. HOM05D001054 ORTHO05D007110 2.1e-41 172.2 102 76.5
CDE04G1953 Ceratophyllum demersum HOM05D001054 ORTHO05D007110 2.8e-41 171.8 102 77.5
arahy.Tifrunner.gnm1.ann1.AR4BCX Arachis hypogaea HOM05D001054 ORTHO05D007110 3.6e-41 171.4 102 75.5
Glyma.11G049900 Glycine max HOM05D001054 ORTHO05D007110 3.6e-41 171.4 104 76.9
Duzib147G0207 Durio zibethinus HOM05D001054 ORTHO05D007110 6.2e-41 170.6 102 77.5
Glyma.01G192200 Glycine max HOM05D001054 ORTHO05D007110 6.2e-41 170.6 104 76.0
SGA_v2.0_scaffold15G07420 Striga asiatica HOM05D001054 ORTHO05D007110 6.2e-41 170.6 102 77.5
ATR1096G061 Amborella trichopoda HOM05D001054 ORTHO05D007110 1.8e-40 169.1 102 75.5
Lj4g0019986 Lotus japonicus HOM05D001054 ORTHO05D007110 1.2e-39 166.4 102 72.5
HPP92_018502 Vanilla planifolia HOM05D001054 ORTHO05D007110 1.5e-39 166.0 102 74.5
Medtr5g016070 Medicago truncatula HOM05D001054 ORTHO05D007110 2.0e-39 165.6 102 75.5
Ca_24720_v3 Cicer arietinum L. HOM05D001054 ORTHO05D007110 2.6e-39 165.2 102 76.5
Lalb_Chr09g0323511 Lupinus albus HOM05D001054 ORTHO05D007110 2.6e-39 165.2 102 73.5
Psat2g170280 Pisum sativum HOM05D001054 ORTHO05D007110 3.4e-39 164.9 102 75.5
arahy.Tifrunner.gnm1.ann1.5YK3TE Arachis hypogaea HOM05D001054 ORTHO05D007110 1.3e-38 162.9 102 72.5
Phvul.002G012600 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 1.7e-38 162.5 104 71.2
DCAR_021470 Daucus carota HOM05D001054 ORTHO05D007110 2.9e-38 161.8 90 82.2
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 3.8e-38 161.4 96 78.1
TPR.G20955 Trifolium pratense HOM05D001054 ORTHO05D007110 4.9e-38 161.0 102 74.5
VMungo0251G1033 Vigna mungo HOM05D001054 ORTHO05D007110 1.1e-37 159.8 100 74.0
CSS0030463 Camellia sinensis var. sinensis HOM05D001054 ORTHO05D007110 1.9e-37 159.1 90 80.0
Lj2g0007837 Lotus japonicus HOM05D001054 ORTHO05D007110 3.2e-37 158.3 102 72.5
Lalb_Chr05g0213551 Lupinus albus HOM05D001054 ORTHO05D007110 3.2e-37 158.3 102 69.6
VMungo1215G2035 Vigna mungo HOM05D001054 ORTHO05D007110 3.2e-37 158.3 104 70.2
Phvul.003G236900 Phaseolus vulgaris HOM05D001054 ORTHO05D007110 5.4e-37 157.5 102 70.6
Medtr4g095410 Medicago truncatula HOM05D001054 ORTHO05D007110 9.3e-37 156.8 100 72.0
HPP92_017544 Vanilla planifolia HOM05D001054 ORTHO05D007110 2.1e-36 155.6 102 66.7
ECA238G1085 Erigeron canadensis HOM05D001054 ORTHO05D007110 3.5e-36 154.8 90 77.8
Psat4g083600 Pisum sativum HOM05D001054 ORTHO05D007110 6.0e-36 154.1 100 69.0
TPR.G23864 Trifolium pratense HOM05D001054 ORTHO05D007110 6.0e-36 154.1 100 69.0
arahy.Tifrunner.gnm1.ann1.SB8Z2H Arachis hypogaea HOM05D001054 ORTHO05D007110 7.9e-36 153.7 96 74.0
SEGI_10508 Sequoiadendron giganteum HOM05D001054 ORTHO05D007110 1.3e-35 152.9 101 68.3
Ah.02g125600 Amaranthus hybridus HOM05D001054 ORTHO05D007110 3.9e-35 151.4 99 72.7
Pp3c5_10700 Physcomitrium patens HOM05D001054 ORTHO05D007110 3.4e-31 138.3 98 63.3
AagrBONN_evm.TU.Sc2ySwM_368.879 Anthoceros agrestis HOM05D001054 ORTHO05D007110 1.0e-27 126.7 95 63.2
Actinidia36442 Actinidia chinensis HOM05D001054 ORTHO05D007110 1.9e-26 122.5 79 73.4
Mapoly0005s0153 Marchantia polymorpha HOM05D001054 ORTHO05D007110 1.1e-24 116.7 100 55.0
SMO119G0428 Selaginella moellendorffii HOM05D001054 ORTHO05D007110 1.7e-22 109.4 99 55.6
AT2G48121 Arabidopsis thaliana HOM05D001054 ORTHO05D026867 4.6e-20 101.3 57 78.9
A03p65210 Brassica napus HOM05D001054 ORTHO05D026867 1.0e-19 100.1 64 71.9
BraA03t15579Z Brassica rapa HOM05D001054 ORTHO05D026867 1.0e-19 100.1 64 71.9
Zm00001eb150280 Zea mays HOM05D001054 ORTHO05D007110 2.2e-14 82.4 45 77.8


User provided reference genes

Program Settings