Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00900 Eucalyptus grandis HOM05D004528 ORTHO05D005815 7.6e-231 803.5 415 100.0
Ciclev10008462m.g Citrus clementina HOM05D004528 ORTHO05D005815 2.3e-203 712.2 413 87.7
Manes.16G102700 Manihot esculenta HOM05D004528 ORTHO05D005815 1.9e-202 709.1 413 87.2
Potri.006G221700 Populus trichocarpa HOM05D004528 ORTHO05D005815 1.6e-201 706.1 413 86.2
GSVIVG01015212001 Vitis vinifera HOM05D004528 ORTHO05D005815 2.8e-201 705.3 413 86.2
Thecc.09G090300 Theobroma cacao HOM05D004528 ORTHO05D005815 9.0e-200 700.3 413 86.0
CANSAT56G0596 Cannabis sativa HOM05D004528 ORTHO05D005815 3.4e-199 698.4 413 85.5
CANSAT56G1313 Cannabis sativa HOM05D004528 ORTHO05D005815 3.4e-199 698.4 413 85.5
MD15G1206300 Malus domestica HOM05D004528 ORTHO05D005815 1.7e-198 696.0 413 85.7
Prupe.7G211100 Prunus persica HOM05D004528 ORTHO05D005815 1.7e-198 696.0 413 85.2
CiPaw.03G217000 Carya illinoinensis HOM05D004528 ORTHO05D005815 8.4e-198 693.7 415 85.3
QL02p062827 Quercus lobata HOM05D004528 ORTHO05D005815 1.9e-197 692.6 416 84.9
Duzib150G1454 Durio zibethinus HOM05D004528 ORTHO05D005815 3.2e-197 691.8 409 85.3
COL.COLO4_18209 Corchorus olitorius HOM05D004528 ORTHO05D005815 1.2e-196 689.9 413 84.7
MBI01_g09956_MAGBIO Magnolia biondii HOM05D004528 ORTHO05D005815 2.1e-196 689.1 411 83.7
Dinv36760 Davidia involucrata HOM05D004528 ORTHO05D005815 2.7e-196 688.7 413 84.7
Gorai.010G082500 Gossypium raimondii HOM05D004528 ORTHO05D005815 3.5e-196 688.3 413 84.7
MD02G1077700 Malus domestica HOM05D004528 ORTHO05D005815 3.5e-196 688.3 413 84.7
CSS0033534 Camellia sinensis var. sinensis HOM05D004528 ORTHO05D005815 2.3e-195 685.6 413 84.0
RcHm_v2.0_Chr2g0093221 Rosa chinensis HOM05D004528 ORTHO05D005815 3.0e-195 685.3 413 83.3
TWI34G0432 Tripterygium wilfordii HOM05D004528 ORTHO05D005815 5.1e-195 684.5 413 83.5
Hma1.2p1_0800F.1_g220090 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 1.1e-194 683.3 411 84.4
PGR142G0229 Punica granatum HOM05D004528 ORTHO05D005815 1.1e-194 683.3 408 85.5
ECA240G0155 Erigeron canadensis HOM05D004528 ORTHO05D005815 3.7e-193 678.3 415 81.9
FAN19G1322 Fragaria x ananassa HOM05D004528 ORTHO05D005815 6.3e-193 677.6 413 82.3
FvH4_1g07290 Fragaria vesca HOM05D004528 ORTHO05D005815 8.2e-193 677.2 413 82.1
VMungo1215G0680 Vigna mungo HOM05D004528 ORTHO05D005815 1.1e-192 676.8 413 83.1
Haze_25904 Corylus avellana HOM05D004528 ORTHO05D005815 1.4e-192 676.4 411 83.9
FAN23G0078 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.8e-192 676.0 413 81.8
FAN28G2769 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.1e-192 674.9 413 81.8
Phvul.003G137300 Phaseolus vulgaris HOM05D004528 ORTHO05D005815 6.9e-192 674.1 413 82.8
Glyma.13G103500 Glycine max HOM05D004528 ORTHO05D005815 9.0e-192 673.7 411 83.2
Glyma.17G055500 Glycine max HOM05D004528 ORTHO05D005815 1.2e-191 673.3 413 82.3
Lj7A674G30 Lonicera japonica HOM05D004528 ORTHO05D005815 4.5e-191 671.4 409 83.9
Sed0012435 Sechium edule HOM05D004528 ORTHO05D005815 4.5e-191 671.4 413 81.6
Aqoxy7G01232 Aquilegia oxysepala HOM05D004528 ORTHO05D005815 1.0e-190 670.2 413 81.1
arahy.Tifrunner.gnm1.ann1.A138U3 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.3e-190 669.8 413 81.4
Migut.J00603 Erythranthe guttata HOM05D004528 ORTHO05D005815 1.7e-190 669.5 415 81.2
Lalb_Chr13g0299741 Lupinus albus HOM05D004528 ORTHO05D005815 2.9e-190 668.7 413 82.1
TAR626G1836 Trochodendron aralioides HOM05D004528 ORTHO05D005815 2.9e-190 668.7 413 81.6
vmacro17227 Vaccinium macrocarpon HOM05D004528 ORTHO05D005815 5.0e-190 667.9 444 77.5
arahy.Tifrunner.gnm1.ann1.PT0GJ5 Arachis hypogaea HOM05D004528 ORTHO05D005815 1.1e-189 666.8 413 81.1
ClCG11G001780 Citrullus lanatus HOM05D004528 ORTHO05D005815 1.4e-189 666.4 413 81.6
DCAR_011978 Daucus carota HOM05D004528 ORTHO05D005815 1.2e-188 663.3 415 81.2
SGA_v2.0_scaffold62G21604 Striga asiatica HOM05D004528 ORTHO05D005815 1.6e-188 662.9 415 81.0
SalBow6G2464 Salvia bowleyana HOM05D004528 ORTHO05D005815 2.7e-188 662.1 415 80.7
MSTRG.17774 Avicennia marina HOM05D004528 ORTHO05D005815 4.6e-188 661.4 415 80.5
CsaV3_2G001490 Cucumis sativus L. HOM05D004528 ORTHO05D005815 2.3e-187 659.1 409 80.4
PGSC0003DMG400013151 Solanum tuberosum HOM05D004528 ORTHO05D005815 3.0e-187 658.7 414 80.4
Solyc07g039210.4 Solanum lycopersicum HOM05D004528 ORTHO05D005815 6.7e-187 657.5 414 79.7
Cc06_g11330 Coffea canephora HOM05D004528 ORTHO05D005815 2.5e-186 655.6 414 80.9
Nitab4.5_0011030g0010 Nicotiana tabacum HOM05D004528 ORTHO05D005815 2.5e-186 655.6 413 80.1
Lsat_1_v5_gn_7_37341 Lactuca sativa HOM05D004528 ORTHO05D005815 3.3e-186 655.2 415 79.3
Sopen07g017560 Solanum pennellii HOM05D004528 ORTHO05D005815 4.3e-186 654.8 414 79.2
CAN.G1208.1 Capsicum annuum HOM05D004528 ORTHO05D005815 1.3e-185 653.3 412 80.1
BolC7t40641H Brassica oleracea HOM05D004528 ORTHO05D005815 2.2e-185 652.5 413 79.7
Oeu018425.1 Olea europaea HOM05D004528 ORTHO05D005815 2.8e-185 652.1 415 80.7
C07p02330 Brassica napus HOM05D004528 ORTHO05D005815 4.8e-185 651.4 413 79.7
A07p01220 Brassica napus HOM05D004528 ORTHO05D005815 6.3e-185 651.0 413 79.2
Nitab4.5_0005634g0070 Nicotiana tabacum HOM05D004528 ORTHO05D005815 6.3e-185 651.0 419 79.2
BcaC06g36598 Brassica carinata HOM05D004528 ORTHO05D005815 8.2e-185 650.6 413 79.2
BraA07t27910Z Brassica rapa HOM05D004528 ORTHO05D005815 8.2e-185 650.6 413 79.2
Lj4g0008156 Lotus japonicus HOM05D004528 ORTHO05D005815 8.2e-185 650.6 411 80.5
Carub.0003s3385 Capsella rubella HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 79.4
CARHR109990 Cardamine hirsuta HOM05D004528 ORTHO05D005815 4.1e-184 648.3 413 79.7
TPR.G3725 Trifolium pratense HOM05D004528 ORTHO05D005815 9.0e-184 647.1 413 78.7
Peaxi162Scf00709g00003 Petunia axillaris HOM05D004528 ORTHO05D005815 1.2e-183 646.7 420 78.8
THA.LOC104820025 Tarenaya hassleriana HOM05D004528 ORTHO05D005815 1.2e-183 646.7 413 79.4
Actinidia25256 Actinidia chinensis HOM05D004528 ORTHO05D005815 2.0e-183 646.0 409 80.9
Psat3g072560 Pisum sativum HOM05D004528 ORTHO05D005815 2.6e-183 645.6 413 78.9
BcaB08g34873 Brassica carinata HOM05D004528 ORTHO05D005815 3.4e-183 645.2 413 79.2
AL3G48690 Arabidopsis lyrata HOM05D004528 ORTHO05D005815 4.5e-183 644.8 413 78.9
Thhalv10022707m.g Eutrema salsugineum HOM05D004528 ORTHO05D005815 8.5e-182 640.6 413 78.5
AUR62033986 Chenopodium quinoa HOM05D004528 ORTHO05D005815 3.2e-181 638.6 410 79.0
C05p19590 Brassica napus HOM05D004528 ORTHO05D005815 1.2e-180 636.7 425 76.9
BolC5t30662H Brassica oleracea HOM05D004528 ORTHO05D005815 1.2e-180 636.7 425 76.9
AT2G19560 Arabidopsis thaliana HOM05D004528 ORTHO05D005815 1.6e-180 636.3 413 78.0
BcaC05g26001 Brassica carinata HOM05D004528 ORTHO05D005815 2.1e-180 636.0 425 76.7
Nn6g35452 Nelumbo nucifera HOM05D004528 ORTHO05D005815 1.0e-179 633.6 413 78.9
Aa31LG8G16570 Aethionema arabicum HOM05D004528 ORTHO05D005815 1.4e-179 633.3 413 77.0
EL10Ac8g19227 Beta vulgaris HOM05D004528 ORTHO05D005815 2.3e-179 632.5 437 75.7
Medtr7g091650 Medicago truncatula HOM05D004528 ORTHO05D005815 6.7e-179 630.9 414 78.3
PSO832G3660 Papaver somniferum HOM05D004528 ORTHO05D005815 4.3e-178 628.2 414 77.3
PSO063G0639 Papaver somniferum HOM05D004528 ORTHO05D005815 3.7e-177 625.2 414 77.3
unitig_748.g7306 Utricularia gibba HOM05D004528 ORTHO05D005815 3.7e-177 625.2 429 75.5
HPP92_010493 Vanilla planifolia HOM05D004528 ORTHO05D005815 8.2e-177 624.0 414 75.6
SEGI_06455 Sequoiadendron giganteum HOM05D004528 ORTHO05D005815 1.1e-176 623.6 415 72.3
Sp3g32930 Schrenkiella parvula HOM05D004528 ORTHO05D005815 2.2e-174 615.9 413 76.5
Gohir.A06G072200 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.1e-173 613.6 374 84.0
Gohir.D06G070800 Gossypium hirsutum HOM05D004528 ORTHO05D005815 1.4e-173 613.2 370 84.6
BcaB04g16932 Brassica carinata HOM05D004528 ORTHO05D005815 9.1e-168 594.0 415 73.7
Os09g0386400 Oryza sativa ssp. japonica HOM05D004528 ORTHO05D005815 3.8e-166 588.6 412 71.4
Ca_08460_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 5.0e-166 588.2 405 75.3
SHI24590 Sapria himalayana HOM05D004528 ORTHO05D005815 1.4e-163 580.1 410 73.2
Cpa.g.sc283.9 Carica papaya HOM05D004528 ORTHO05D005815 2.3e-163 579.3 411 74.5
Sc18g0002070 Simmondsia chinensis HOM05D004528 ORTHO05D005815 1.1e-162 577.0 370 80.3
Mapoly0005s0151 Marchantia polymorpha HOM05D004528 ORTHO05D005815 7.0e-160 567.8 403 68.7
MELO3C004622.2 Cucumis melo HOM05D004528 ORTHO05D005815 1.2e-159 567.0 413 71.2
Rhsim05G0022000 Rhododendron simsii HOM05D004528 ORTHO05D005815 3.6e-156 555.4 319 86.8
Sabra06G0171200 Salix brachista HOM05D004528 ORTHO05D005815 1.3e-153 547.0 484 63.6
BcaB04g16933 Brassica carinata HOM05D004528 ORTHO05D005815 1.0e-150 537.3 417 67.6
AUR62027494 Chenopodium quinoa HOM05D004528 ORTHO05D005815 2.5e-149 532.7 410 69.8
Pp3c17_12810 Physcomitrium patens HOM05D004528 ORTHO05D005815 1.0e-147 527.3 399 64.9
SMO117G0048 Selaginella moellendorffii HOM05D004528 ORTHO05D005815 4.9e-145 518.5 405 61.7
AagrBONN_evm.TU.Sc2ySwM_344.906 Anthoceros agrestis HOM05D004528 ORTHO05D005815 3.1e-144 515.8 412 62.4
Atru.chr7.1579 Acer truncatum HOM05D004528 ORTHO05D005815 1.3e-137 493.8 295 84.1
A07p01200 Brassica napus HOM05D004528 ORTHO05D005815 6.4e-137 491.5 305 79.0
FAN26G2732 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.1e-136 490.7 281 85.8
FAN26G1375 Fragaria x ananassa HOM05D004528 ORTHO05D005815 4.1e-136 488.8 281 85.4
Hma1.2p1_0800F.1_g220100 Hydrangea macrophylla HOM05D004528 ORTHO05D005815 3.0e-126 456.1 257 88.7
Zm00001eb311810 Zea mays HOM05D004528 ORTHO05D005815 9.5e-117 424.5 256 80.9
CDE02G2136 Ceratophyllum demersum HOM05D004528 ORTHO05D005815 6.2e-116 421.8 314 70.1
HPP92_010492 Vanilla planifolia HOM05D004528 ORTHO05D005815 2.3e-115 419.9 284 73.9
BcaB03g16691 Brassica carinata HOM05D004528 ORTHO05D005815 1.9e-109 400.2 313 67.1
BcaB03g16690 Brassica carinata HOM05D004528 ORTHO05D005815 1.3e-102 377.5 284 68.3
BcaB03g16744 Brassica carinata HOM05D004528 ORTHO05D005815 6.9e-99 365.2 292 68.5
CBR_g78884 Chara braunii HOM05D004528 ORTHO05D005815 4.9e-97 359.0 402 47.5
Ca_30052_v3 Cicer arietinum L. HOM05D004528 ORTHO05D005815 3.3e-85 319.7 191 84.3
Oeu018237.1 Olea europaea HOM05D004528 ORTHO05D005815 2.6e-82 310.1 205 77.1
CARHR052830 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.5e-77 293.5 238 64.3
HanXRQChr09g0238111 Helianthus annuus HOM05D004528 ORTHO05D005815 1.4e-75 287.7 186 75.8
PGSC0003DMG400022053 Solanum tuberosum HOM05D004528 ORTHO05D005815 7.2e-72 275.4 173 79.8
CARHR051760 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.9e-69 267.3 197 69.0
CARHR054270 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.2e-63 248.1 204 64.7
MCO16G315 Micromonas commoda HOM05D004528 ORTHO05D005815 4.6e-63 246.1 401 36.9
MD15G1352000 Malus domestica HOM05D004528 ORTHO05D005815 1.5e-58 231.1 219 58.9
Cre02.g110400 Chlamydomonas reinhardtii HOM05D004528 ORTHO05D005815 3.8e-57 226.5 406 36.0
ATR0026G021 Amborella trichopoda HOM05D004528 ORTHO05D005815 6.5e-57 225.7 131 84.7
PRCOL_00001383 Prasinoderma coloniale HOM05D004528 ORTHO05D005815 4.2e-56 223.0 318 37.7
CARHR122310 Cardamine hirsuta HOM05D004528 ORTHO05D005815 9.1e-51 205.3 126 81.0
arahy.Tifrunner.gnm1.ann1.43843R Arachis hypogaea HOM05D004528 ORTHO05D005815 5.9e-50 202.6 121 76.9
CARHR052790 Cardamine hirsuta HOM05D004528 ORTHO05D005815 2.3e-46 190.7 198 59.1
arahy.Tifrunner.gnm1.ann1.VVLB7Q Arachis hypogaea HOM05D004528 ORTHO05D005815 1.7e-41 174.5 102 79.4
CARHR122320 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.5e-41 172.2 176 56.8
CARHR051750 Cardamine hirsuta HOM05D004528 ORTHO05D005815 3.2e-40 170.2 160 61.2
Ah.14g085220 Amaranthus hybridus HOM05D004528 ORTHO05D005815 4.1e-35 153.3 413 31.5
ATR0026G011 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.5e-34 149.8 107 64.5
arahy.Tifrunner.gnm1.ann1.DFU5EN Arachis hypogaea HOM05D004528 ORTHO05D005815 5.9e-34 149.4 83 83.1
ATR0026G010 Amborella trichopoda HOM05D004528 ORTHO05D005815 4.2e-32 143.3 80 85.0
Sp2g03965 Schrenkiella parvula HOM05D004528 ORTHO05D005815 7.2e-32 142.5 113 66.4
RcHm_v2.0_Chr7g0206721 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-26 124.8 117 60.7
Sopen12g027230 Solanum pennellii HOM05D004528 ORTHO05D051045 9.2e-19 99.0 157 40.8
RcHm_v2.0_Chr7g0207111 Rosa chinensis HOM05D004528 ORTHO05D005815 4.6e-18 96.7 101 56.4
BcaC03g15601 Brassica carinata HOM05D004528 ORTHO05D032255 3.9e-17 93.6 127 50.4
BolC2t09319H Brassica oleracea HOM05D004528 ORTHO05D032255 1.5e-16 91.7 143 45.5
FAN23G1719 Fragaria x ananassa HOM05D004528 ORTHO05D005815 1.5e-16 91.7 51 84.3
C02p33900 Brassica napus HOM05D004528 ORTHO05D032255 1.4e-14 85.1 146 43.8
RcHm_v2.0_Chr7g0207281 Rosa chinensis HOM05D004528 ORTHO05D005815 2.6e-13 80.9 54 81.5
CARHR054260 Cardamine hirsuta HOM05D004528 ORTHO05D005815 8.3e-12 75.9 50 72.0
arahy.Tifrunner.gnm1.ann1.1S90RN Arachis hypogaea HOM05D004528 ORTHO05D005815 4.6e-10 70.1 55 63.6
arahy.Tifrunner.gnm1.ann1.UXE40S Arachis hypogaea HOM05D004528 ORTHO05D005815 2.5e-08 64.3 81 44.4
CARHR054280 Cardamine hirsuta HOM05D004528 ORTHO05D005815 1.6e-07 61.6 70 52.9
RcHm_v2.0_Chr7g0230831 Rosa chinensis HOM05D004528 ORTHO05D005815 1.6e-07 61.6 38 76.3


User provided reference genes

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