Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00720 Eucalyptus grandis HOM05D007983 ORTHO05D010117 0.0e+00 1377.8 673 100.0
QL02p016696 Quercus lobata HOM05D007983 ORTHO05D010117 1.5e-98 364.8 694 36.0
Actinidia29344 Actinidia chinensis HOM05D007983 ORTHO05D010117 1.3e-91 341.7 682 37.0
Haze_18113 Corylus avellana HOM05D007983 ORTHO05D010117 7.2e-90 335.9 698 36.1
Hma1.2p1_0231F.1_g097380 Hydrangea macrophylla HOM05D007983 ORTHO05D010117 3.6e-89 333.6 662 36.9
Nn8g38701 Nelumbo nucifera HOM05D007983 ORTHO05D010117 3.6e-89 333.6 706 34.7
Ciclev10007465m.g Citrus clementina HOM05D007983 ORTHO05D010117 1.2e-87 328.6 689 35.6
Thecc.09G062200 Theobroma cacao HOM05D007983 ORTHO05D010117 1.5e-87 328.2 685 34.9
Dinv02180 Davidia involucrata HOM05D007983 ORTHO05D010117 4.4e-87 326.6 668 35.3
Cfa018016 Carpinus fangiana HOM05D007983 ORTHO05D010117 9.8e-87 325.5 591 37.2
GSVIVG01035456001 Vitis vinifera HOM05D007983 ORTHO05D010117 8.3e-86 322.4 696 34.5
Prupe.1G405500 Prunus persica HOM05D007983 ORTHO05D010117 6.6e-83 312.8 686 34.1
MD15G1051500 Malus domestica HOM05D007983 ORTHO05D010117 8.9e-80 302.4 635 35.4
Gohir.D06G083500 Gossypium hirsutum HOM05D007983 ORTHO05D010117 1.6e-76 291.6 686 33.4
RcHm_v2.0_Chr6g0311661 Rosa chinensis HOM05D007983 ORTHO05D010117 2.0e-76 291.2 702 34.0
Atru.chr7.1856 Acer truncatum HOM05D007983 ORTHO05D010117 7.8e-76 289.3 685 32.7
COL.COLO4_21129 Corchorus olitorius HOM05D007983 ORTHO05D010117 7.8e-76 289.3 688 33.3
MD08G1070600 Malus domestica HOM05D007983 ORTHO05D010117 9.5e-74 282.3 653 34.6
Gorai.010G097000 Gossypium raimondii HOM05D007983 ORTHO05D010117 6.2e-73 279.6 605 34.9
CANSAT25G2345 Cannabis sativa HOM05D007983 ORTHO05D010117 1.8e-72 278.1 687 32.2
Gohir.A06G082600 Gossypium hirsutum HOM05D007983 ORTHO05D010117 5.2e-72 276.6 686 33.1
Cc08_g01250 Coffea canephora HOM05D007983 ORTHO05D010117 8.9e-72 275.8 624 34.1
Actinidia03544 Actinidia chinensis HOM05D007983 ORTHO05D010117 1.7e-70 271.6 367 42.8
FAN27G2148 Fragaria x ananassa HOM05D007983 ORTHO05D010117 3.7e-70 270.4 718 32.0
Manes.16G085100 Manihot esculenta HOM05D007983 ORTHO05D010117 3.9e-67 260.4 688 31.5
FvH4_2g31120 Fragaria vesca HOM05D007983 ORTHO05D010117 6.6e-67 259.6 713 30.7
MBI13_g11355_MAGBIO Magnolia biondii HOM05D007983 ORTHO05D010117 3.3e-66 257.3 730 30.0
ATR0598G010 Amborella trichopoda HOM05D007983 ORTHO05D010117 1.6e-65 255.0 731 30.5
Oeu022786.3 Olea europaea HOM05D007983 ORTHO05D010117 1.8e-64 251.5 689 31.3
FAN24G0660 Fragaria x ananassa HOM05D007983 ORTHO05D010117 4.0e-64 250.4 699 29.9
Aqoxy7G01072 Aquilegia oxysepala HOM05D007983 ORTHO05D010117 2.0e-63 248.1 646 31.1
CAN.G20.9 Capsicum annuum HOM05D007983 ORTHO05D010117 1.5e-58 231.9 625 32.8
HanXRQChr05g0136011 Helianthus annuus HOM05D007983 ORTHO05D010117 6.8e-56 223.0 637 30.9
Nitab4.5_0008611g0010 Nicotiana tabacum HOM05D007983 ORTHO05D010117 6.8e-56 223.0 547 32.5
AUR62009087 Chenopodium quinoa HOM05D007983 ORTHO05D010117 2.6e-55 221.1 647 30.4
Oeu003976.2 Olea europaea HOM05D007983 ORTHO05D010117 3.8e-54 217.2 657 31.1
EL10Ac2g03791 Beta vulgaris HOM05D007983 ORTHO05D010117 1.4e-53 215.3 639 30.5
AUR62020583 Chenopodium quinoa HOM05D007983 ORTHO05D010117 1.9e-53 214.9 669 31.2
Nitab4.5_0000446g0230 Nicotiana tabacum HOM05D007983 ORTHO05D010117 7.1e-53 213.0 631 31.5
Peaxi162Scf00101g00166 Petunia axillaris HOM05D007983 ORTHO05D010117 5.1e-51 206.8 607 31.0
ECA236G1209 Erigeron canadensis HOM05D007983 ORTHO05D010117 4.3e-50 203.8 586 31.1
Hund19424 Selenicereus undatus HOM05D007983 ORTHO05D010117 7.3e-50 203.0 603 30.2
SGA_v2.0_scaffold20G09171 Striga asiatica HOM05D007983 ORTHO05D010117 8.1e-49 199.5 640 30.9
Lj7A227T29 Lonicera japonica HOM05D007983 ORTHO05D010117 2.2e-46 191.4 503 31.4
HanXRQChr09g0261791 Helianthus annuus HOM05D007983 ORTHO05D010117 4.9e-46 190.3 566 30.6
SEGI_25530 Sequoiadendron giganteum HOM05D007983 ORTHO05D010117 1.9e-45 188.3 545 29.0
SGA_v2.0_scaffold64G21870 Striga asiatica HOM05D007983 ORTHO05D010117 1.9e-45 188.3 538 30.9
Lsat_1_v5_gn_8_70680 Lactuca sativa HOM05D007983 ORTHO05D010117 2.7e-44 184.5 649 28.5
DCAR_004382 Daucus carota HOM05D007983 ORTHO05D010117 3.0e-43 181.0 608 29.3
CDE05G0854 Ceratophyllum demersum HOM05D007983 ORTHO05D010117 1.9e-42 178.3 661 27.8
Ah.10g033950 Amaranthus hybridus HOM05D007983 ORTHO05D010117 3.6e-41 174.1 513 30.4
PGSC0003DMG400021755 Solanum tuberosum HOM05D007983 ORTHO05D010117 8.1e-41 172.9 483 30.4
DCAR_001219 Daucus carota HOM05D007983 ORTHO05D010117 2.9e-38 164.5 368 31.8
TWI63G1392 Tripterygium wilfordii HOM05D007983 ORTHO05D010117 2.7e-36 157.9 336 33.9
MELO3C011486.2 Cucumis melo HOM05D007983 ORTHO05D010117 3.9e-35 154.1 672 28.9
CsaV3_6G031940 Cucumis sativus L. HOM05D007983 ORTHO05D010117 5.1e-35 153.7 667 28.3
TAR383G0143 Trochodendron aralioides HOM05D007983 ORTHO05D010117 8.7e-35 152.9 429 30.5
Lj7C225G6 Lonicera japonica HOM05D007983 ORTHO05D010117 1.1e-32 146.0 514 29.4
Solyc08g061890.4 Solanum lycopersicum HOM05D007983 ORTHO05D010117 4.5e-31 140.6 561 28.0
Sopen08g017390 Solanum pennellii HOM05D007983 ORTHO05D010117 9.9e-31 139.4 457 26.9
TAR383G0105 Trochodendron aralioides HOM05D007983 ORTHO05D010117 1.7e-30 138.7 178 43.8
Migut.A00082 Erythranthe guttata HOM05D007983 ORTHO05D010117 1.6e-28 132.1 573 27.7
Lj7C225G3 Lonicera japonica HOM05D007983 ORTHO05D010117 1.3e-27 129.0 178 44.4
Sed0022705 Sechium edule HOM05D007983 ORTHO05D010117 1.3e-27 129.0 618 26.1
Mapoly0094s0033 Marchantia polymorpha HOM05D002513 ORTHO05D002720 1.1e-24 119.4 632 24.1
QL02p014349 Quercus lobata HOM05D007983 ORTHO05D010117 1.1e-24 119.4 519 25.6
ClCG08G009810 Citrullus lanatus HOM05D007983 ORTHO05D010117 3.4e-23 114.4 561 27.3
ClCG08G009840 Citrullus lanatus HOM05D007983 ORTHO05D010117 4.5e-23 114.0 561 27.3
TWI34G1656 Tripterygium wilfordii HOM05D007983 ORTHO05D010117 1.4e-16 92.4 231 30.3
Pp3c1_38750 Physcomitrium patens HOM05D002513 ORTHO05D002720 2.9e-14 84.7 670 23.1
Pp3c2_9100 Physcomitrium patens HOM05D002513 ORTHO05D002720 1.1e-13 82.8 113 39.8
CBR_g21758 Chara braunii HOM05D002513 ORTHO05D002720 7.2e-13 80.1 132 36.4
TWI34G0821 Tripterygium wilfordii HOM05D007983 ORTHO05D010117 2.1e-12 78.6 187 34.8
Pp3c9_4170 Physcomitrium patens HOM05D007983 ORTHO05D010117 8.7e-11 73.2 76 44.7
Mapoly0024s0115 Marchantia polymorpha HOM05D002513 ORTHO05D002720 2.8e-09 68.2 76 47.4
Zm00001eb052630 Zea mays HOM05D002513 ORTHO05D002720 3.7e-09 67.8 91 38.5
AagrBONN_evm.TU.Sc2ySwM_362.299 Anthoceros agrestis HOM05D002513 ORTHO05D002720 8.2e-09 66.6 74 41.9
Zm00001eb218140 Zea mays HOM05D002513 ORTHO05D002720 1.1e-08 66.2 91 37.4
Gohir.A07G155768 Gossypium hirsutum HOM05D002513 ORTHO05D002720 5.3e-08 63.9 98 32.7
Gorai.009G359800 Gossypium raimondii HOM05D002513 ORTHO05D002720 9.1e-08 63.2 98 32.7
SMO115G0156 Selaginella moellendorffii HOM05D002513 ORTHO05D002720 1.5e-07 62.4 81 39.5
Gohir.A04G046440 Gossypium hirsutum HOM05D002513 ORTHO05D002720 2.0e-07 62.0 102 32.4
Ca_03894_v3 Cicer arietinum L. HOM05D002513 ORTHO05D002720 4.5e-07 60.8 102 34.3
Aa31LG6G140 Aethionema arabicum HOM05D002513 ORTHO05D002720 5.9e-07 60.5 103 37.9
AagrBONN_evm.TU.Sc2ySwM_228.2980 Anthoceros agrestis HOM05D007983 ORTHO05D010117 5.9e-07 60.5 200 27.0
CSS0008127 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 5.9e-07 60.5 145 29.0
FAN13G1831 Fragaria x ananassa HOM05D002513 ORTHO05D002720 5.9e-07 60.5 72 44.4
Medtr5g097760 Medicago truncatula HOM05D002513 ORTHO05D002720 5.9e-07 60.5 133 30.8
SEGI_13497 Sequoiadendron giganteum HOM05D002513 ORTHO05D002720 5.9e-07 60.5 72 41.7
TAR636G3156 Trochodendron aralioides HOM05D001234 ORTHO05D001048 5.9e-07 60.5 44 59.1
Aa31sc151G10 Aethionema arabicum HOM05D002513 ORTHO05D002720 7.7e-07 60.1 103 36.9
Aqoxy5G00460 Aquilegia oxysepala HOM05D002513 ORTHO05D002720 7.7e-07 60.1 112 33.9
Gohir.A04G046480 Gossypium hirsutum HOM05D002513 ORTHO05D002720 7.7e-07 60.1 98 31.6
MD06G1055600 Malus domestica HOM05D002513 ORTHO05D002720 7.7e-07 60.1 72 43.1
Medtr5g098230 Medicago truncatula HOM05D002513 ORTHO05D002720 7.7e-07 60.1 133 30.8
TPR.G24353 Trifolium pratense HOM05D002513 ORTHO05D002720 7.7e-07 60.1 102 33.3
ATR0697G259 Amborella trichopoda HOM05D002513 ORTHO05D002720 1.0e-06 59.7 73 41.1
CSS0000182 Camellia sinensis var. sinensis HOM05D002513 ORTHO05D002720 1.0e-06 59.7 116 32.8
CARHR173950 Cardamine hirsuta HOM05D002513 ORTHO05D002720 1.0e-06 59.7 103 35.9
FvH4_5g19330 Fragaria vesca HOM05D002513 ORTHO05D002720 1.0e-06 59.7 72 43.1
FAN04G1005 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.0e-06 59.7 72 43.1
FAN08G2557 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.0e-06 59.7 72 43.1
FAN18G4043 Fragaria x ananassa HOM05D002513 ORTHO05D002720 1.0e-06 59.7 72 43.1
Psat5g188640 Pisum sativum HOM05D002513 ORTHO05D002720 1.0e-06 59.7 160 29.4
Sp2g12130 Schrenkiella parvula HOM05D002513 ORTHO05D002720 1.0e-06 59.7 103 35.9
BcaC04g21626 Brassica carinata HOM05D002513 ORTHO05D002720 1.3e-06 59.3 155 31.0
C09p29740 Brassica napus HOM05D002513 ORTHO05D002720 1.3e-06 59.3 155 31.0
BolC9t55837H Brassica oleracea HOM05D002513 ORTHO05D002720 1.3e-06 59.3 155 31.0
AUR62018445 Chenopodium quinoa HOM05D002513 ORTHO05D002720 1.3e-06 59.3 72 43.1
AUR62020988 Chenopodium quinoa HOM05D002513 ORTHO05D002720 1.3e-06 59.3 72 43.1
CsaV3_3G002590 Cucumis sativus L. HOM05D002513 ORTHO05D002720 1.3e-06 59.3 164 29.3
Os03g0659400 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 1.3e-06 59.3 109 33.0
Potri.001G156000 Populus trichocarpa HOM05D002513 ORTHO05D002720 1.3e-06 59.3 178 27.0
Hund14574 Selenicereus undatus HOM05D002513 ORTHO05D002720 1.3e-06 59.3 72 43.1
AL7G37310 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
BcaC09g50468 Brassica carinata HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
A01p20000 Brassica napus HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
C01p25090 Brassica napus HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
BraA01t01923Z Brassica rapa HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
ClCG10G002560 Citrullus lanatus HOM05D002513 ORTHO05D002720 1.7e-06 58.9 116 36.2
Dinv39163 Davidia involucrata HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 41.7
Thhalv10000768m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.9
Lj2A222G48 Lonicera japonica HOM05D002513 ORTHO05D002720 1.7e-06 58.9 142 31.0
Os10g0431000 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 40.3
Potri.003G078800 Populus trichocarpa HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 41.7
SGA_v2.0_scaffold104G30173 Striga asiatica HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 43.1
Thecc.07G145300 Theobroma cacao HOM05D002513 ORTHO05D002720 1.7e-06 58.9 93 35.5
vmacro14069 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 1.7e-06 58.9 103 35.0
HPP92_004365 Vanilla planifolia HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 40.3
HPP92_004367 Vanilla planifolia HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 40.3
Zm00001eb047610 Zea mays HOM05D002513 ORTHO05D002720 1.7e-06 58.9 72 40.3
MSTRG.12118 Avicennia marina HOM05D002513 ORTHO05D002720 2.2e-06 58.5 78 41.0
BolC1t02460H Brassica oleracea HOM05D002513 ORTHO05D002720 2.2e-06 58.5 103 35.0
Cc08_g12210 Coffea canephora HOM05D002513 ORTHO05D002720 2.2e-06 58.5 72 41.7
Gohir.D12G218300 Gossypium hirsutum HOM05D002513 ORTHO05D002720 2.2e-06 58.5 72 41.7
Medtr5g081800 Medicago truncatula HOM05D002513 ORTHO05D002720 2.2e-06 58.5 133 29.3
RcHm_v2.0_Chr7g0203801 Rosa chinensis HOM05D002513 ORTHO05D002720 2.2e-06 58.5 72 41.7
Sabra01G0134900 Salix brachista HOM05D002513 ORTHO05D002720 2.2e-06 58.5 72 41.7
TAR629G3140 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.2e-06 58.5 73 42.5
TAR633G0646 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.2e-06 58.5 102 33.3
TAR636G2655 Trochodendron aralioides HOM05D002513 ORTHO05D002720 2.2e-06 58.5 102 33.3
A09p23030 Brassica napus HOM05D002513 ORTHO05D002720 2.9e-06 58.2 187 27.8
BraA09t37907Z Brassica rapa HOM05D002513 ORTHO05D002720 2.9e-06 58.2 187 27.8
CANSAT21G1233 Cannabis sativa HOM05D002513 ORTHO05D002720 2.9e-06 58.2 72 40.3
Ciclev10018818m.g Citrus clementina HOM05D002513 ORTHO05D002720 2.9e-06 58.2 73 39.7
Sp7g16790 Schrenkiella parvula HOM05D002513 ORTHO05D002720 2.9e-06 58.2 72 41.7
Solyc10g083150.3 Solanum lycopersicum HOM05D002513 ORTHO05D002720 2.9e-06 58.2 72 41.7
THA.LOC104798367 Tarenaya hassleriana HOM05D002513 ORTHO05D002720 2.9e-06 58.2 103 36.9
Actinidia14412 Actinidia chinensis HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
AT4G17410 Arabidopsis thaliana HOM05D002513 ORTHO05D002720 3.8e-06 57.8 103 35.0
Carub.0008s0036 Capsella rubella HOM05D002513 ORTHO05D002720 3.8e-06 57.8 103 35.0
CAN.G841.7 Capsicum annuum HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
Duzib205G1336 Durio zibethinus HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
ECA240G4211 Erigeron canadensis HOM05D002513 ORTHO05D002720 3.8e-06 57.8 91 37.4
Migut.A01126 Erythranthe guttata HOM05D002513 ORTHO05D002720 3.8e-06 57.8 145 30.3
Glyma.05G061500 Glycine max HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
Gohir.A12G215700 Gossypium hirsutum HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
Gorai.008G233900 Gossypium raimondii HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
Os03g0335100 Oryza sativa ssp. japonica HOM05D002513 ORTHO05D002720 3.8e-06 57.8 65 43.1
Prupe.5G066400 Prunus persica HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
PGR042G3434 Punica granatum HOM05D002513 ORTHO05D002720 3.8e-06 57.8 102 33.3
Sopen10g032620 Solanum pennellii HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
Thecc.03G248600 Theobroma cacao HOM05D002513 ORTHO05D002720 3.8e-06 57.8 72 41.7
AL8G10610 Arabidopsis lyrata HOM05D002513 ORTHO05D002720 5.0e-06 57.4 103 35.0
Duzib041G0095 Durio zibethinus HOM05D002513 ORTHO05D002720 5.0e-06 57.4 109 33.0
HanXRQChr13g0417821 Helianthus annuus HOM05D002513 ORTHO05D002720 5.0e-06 57.4 91 36.3
Nn4g26338 Nelumbo nucifera HOM05D002513 ORTHO05D002720 5.0e-06 57.4 73 41.1
Rhsim07G0110400 Rhododendron simsii HOM05D002513 ORTHO05D002720 5.0e-06 57.4 102 34.3
vmacro00186 Vaccinium macrocarpon HOM05D002513 ORTHO05D002720 5.0e-06 57.4 72 41.7
Eucgr.E00408 Eucalyptus grandis HOM05D002513 ORTHO05D002720 6.5e-06 57.0 72 38.9
Lj4g0017155 Lotus japonicus HOM05D002513 ORTHO05D002720 6.5e-06 57.0 72 41.7
Medtr4g100750 Medicago truncatula HOM05D002513 ORTHO05D002720 6.5e-06 57.0 134 30.6
arahy.Tifrunner.gnm1.ann1.3AS7PC Arachis hypogaea HOM05D002513 ORTHO05D002720 8.5e-06 56.6 103 34.0
Carub.0007s2401 Capsella rubella HOM05D002513 ORTHO05D002720 8.5e-06 56.6 103 34.0
COL.COLO4_10827 Corchorus olitorius HOM05D002513 ORTHO05D002720 8.5e-06 56.6 91 34.1
Haze_20631 Corylus avellana HOM05D002513 ORTHO05D002720 8.5e-06 56.6 101 32.7
Thhalv10024408m.g Eutrema salsugineum HOM05D002513 ORTHO05D002720 8.5e-06 56.6 72 41.7
Phvul.003G222100 Phaseolus vulgaris HOM05D002513 ORTHO05D002720 8.5e-06 56.6 72 41.7
Rhsim11G0000900 Rhododendron simsii HOM05D002513 ORTHO05D002720 8.5e-06 56.6 72 41.7
VMungo0251G3547 Vigna mungo HOM05D002513 ORTHO05D002720 8.5e-06 56.6 72 41.7


User provided reference genes

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