Gene: AT4G17410

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G17410
  • Transcript Identifier AT4G17410.3
  • Gene Type Coding gene
  • Location Chr4 : 9716360-9721642 : positive

Gene Family Information

  • ID HOM05D002513
  • #Genes/#Species 271/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G17410.3
  • uniprot F4JP52

Descriptions

  • Description DWNN domain, a CCHC-type zinc finger
  • Computational description DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1); Has 9457 Blast hits to 6950 proteins in 351 species: Archae - 2; Bacteria - 103; Metazoa - 5659; Fungi - 1428; Plants - 824; Viruses - 57; Other Eukaryotes - 1384 (source: NCBI BLink).
  • Computational description DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT5G47430.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0072756
IMP
Gene Ontologycellular response to paraquat1
GO:1901562
IEP
Gene Ontologyresponse to paraquat1
GO:1902883
IMP
Gene Ontologynegative regulation of response to oxidative stress1
GO:1902884
IMP
Gene Ontologypositive regulation of response to oxidative stress1
GO:0006511
IBA
Gene Ontologyubiquitin-dependent protein catabolic process2
GO:0016567
IDA
IBA
IEA
Gene Ontologyprotein ubiquitination1 2
GO:0016567
IEA
InterProprotein ubiquitination
GO:0006397
IEA
Gene OntologymRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0046686
IEP
Gene Ontologyresponse to cadmium ion1
GO:0042542
IEP
Gene Ontologyresponse to hydrogen peroxide1
GO:0034971
IMP
Gene Ontologyhistone H3-R17 methylation1
GO:0010555
IEP
Gene Ontologyresponse to mannitol1
GO:0009651
IMP
Gene Ontologyresponse to salt stress1
GO:0009414
IEP
Gene Ontologyresponse to water deprivation1
GO:0006979
IEP
Gene Ontologyresponse to oxidative stress1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0061630
IDA
IBA
IEA
Gene Ontologyubiquitin protein ligase activity1 2
GO:0061630
IEA
InterProubiquitin protein ligase activity
GO:0061659
IDA
Gene Ontologyubiquitin-like protein ligase activity1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016740
IEA
GOA Databasetransferase activity
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D002513
GO:0005515
IPI
Gene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR014891 DWNN domain
IPR013083 Zinc finger, RING/FYVE/PHD-type
IPR033489 E3 ubiquitin-protein ligase RBBP6 family
IPR025829 Zinc knuckle CX2CX3GHX4C
Mapman id Description
16.3.1.2.8 RNA processing.RNA 3'-end processing.mRNA polyadenylation.Cleavage and Polyadenylation Specificity Factor (CPSF) complex.ubiquitin ligase component PQT3/MPE1