Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 0.0e+00 1103.6 565 100.0
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 7.1e-248 860.5 572 78.7
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.7e-241 839.3 503 82.1
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 4.9e-241 837.8 576 76.6
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.2e-239 833.2 580 75.3
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.1e-239 832.4 569 76.6
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 2.1e-239 832.4 569 76.6
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.1e-239 832.4 573 76.3
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 4.6e-239 831.2 564 75.9
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.3e-238 829.7 580 73.6
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.7e-238 829.3 503 83.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.4e-235 819.7 533 78.8
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 2.2e-233 812.4 562 74.2
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 3.8e-233 811.6 509 79.6
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.9e-233 811.2 581 73.1
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 6.4e-233 810.8 506 79.8
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 8.4e-233 810.4 570 73.7
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 2.4e-232 808.9 536 75.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 2.4e-232 808.9 583 73.6
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.2e-232 808.5 574 73.2
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.1e-232 807.4 549 75.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 9.3e-232 807.0 581 73.0
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.7e-231 805.4 574 73.0
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 4.6e-231 804.7 508 79.7
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.8e-230 802.7 519 77.5
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.9e-229 799.3 572 73.1
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.5e-229 798.9 575 72.0
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 5.6e-229 797.7 581 71.9
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 7.4e-229 797.3 571 73.6
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 9.6e-229 797.0 593 71.3
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.3e-228 796.6 593 72.5
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.3e-228 796.6 509 78.2
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 4.8e-228 794.7 507 77.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 4.8e-228 794.7 559 74.1
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 6.2e-228 794.3 520 76.7
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 8.1e-228 793.9 520 77.1
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 8.1e-228 793.9 535 74.4
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.4e-227 793.1 581 71.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.4e-227 793.1 579 72.4
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.1e-227 792.0 573 73.5
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.1e-227 792.0 502 79.5
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.0e-227 791.6 570 71.9
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.5e-226 789.6 530 74.0
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.7e-225 786.2 575 71.0
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 1.7e-225 786.2 581 71.4
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.7e-225 786.2 573 72.8
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.9e-225 785.4 569 72.4
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.5e-224 782.3 519 75.0
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 3.2e-224 781.9 507 76.3
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.2e-224 781.9 576 69.3
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 7.1e-224 780.8 507 76.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.1e-224 780.8 566 71.9
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.2e-223 780.0 557 71.5
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 1.2e-223 780.0 509 77.2
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.0e-223 777.7 519 74.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 7.9e-223 777.3 507 75.5
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.8e-222 776.2 518 75.9
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.8e-222 776.2 515 75.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.0e-222 775.4 510 77.1
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 8.7e-222 773.9 577 69.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 8.7e-222 773.9 577 69.2
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 8.7e-222 773.9 515 75.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 8.7e-222 773.9 526 75.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 8.7e-222 773.9 516 76.7
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.5e-221 773.1 578 69.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.5e-221 772.3 577 69.0
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 2.5e-221 772.3 577 69.0
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 4.3e-221 771.5 585 67.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 7.4e-221 770.8 580 69.1
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.3e-220 770.0 577 68.8
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 1.6e-220 769.6 553 70.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 3.7e-220 768.5 556 72.1
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 8.2e-220 767.3 575 70.3
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 3.1e-219 765.4 510 75.3
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 8.5e-217 757.3 558 70.8
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.6e-215 753.1 522 74.7
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-214 750.4 582 68.9
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.6e-212 743.0 582 67.0
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 3.7e-212 741.9 647 63.1
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 4.8e-212 741.5 510 73.9
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.2e-210 736.9 505 74.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.0e-210 736.1 511 74.6
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 4.5e-210 734.9 509 71.1
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.9e-209 732.3 612 65.4
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.2e-207 726.9 455 80.0
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.9e-206 721.8 460 80.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 7.4e-205 717.6 579 66.0
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 2.2e-204 716.1 581 65.4
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 9.1e-203 710.7 575 65.7
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 1.2e-202 710.3 508 73.8
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 2.0e-202 709.5 570 66.0
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.5e-200 702.6 552 67.2
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 4.2e-200 701.8 511 71.0
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 2.1e-199 699.5 592 64.4
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 2.0e-197 693.0 565 64.6
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 6.3e-196 688.0 459 74.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 1.0e-190 670.6 574 62.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.8e-190 667.5 590 60.8
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 5.3e-187 658.3 476 69.3
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 1.6e-186 656.8 579 60.1
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 4.0e-174 615.5 372 80.4
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 4.9e-172 608.6 462 69.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-171 607.4 559 59.2
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.2e-170 604.0 439 69.9
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.3e-164 583.9 523 60.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.5e-160 569.7 538 56.3
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-140 503.8 442 57.7
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.9e-139 500.4 345 72.8
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 2.4e-139 500.0 583 51.3
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 1.8e-134 483.8 488 54.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 9.9e-133 478.0 506 54.3
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.8e-132 476.1 464 53.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 1.3e-129 467.6 507 48.9
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 1.7e-129 467.2 313 78.3
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 7.3e-128 461.8 358 69.0
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.4e-124 448.4 435 55.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.0e-121 441.4 456 54.6
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.9e-113 412.9 266 78.9
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 2.2e-108 397.1 489 45.2
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.7e-90 336.3 282 57.8
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.8e-89 334.3 204 78.4
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 8.8e-81 305.4 220 69.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.4e-73 281.6 202 65.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 5.7e-72 276.2 173 77.5
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 3.5e-69 266.9 262 51.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.2e-67 260.0 224 67.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.2e-67 259.2 401 39.4
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.0e-65 255.4 277 51.6
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 3.0e-65 253.8 178 69.7
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 6.5e-60 236.1 291 44.7
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.6e-60 235.7 271 52.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.0e-57 226.9 129 84.5
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.6e-48 197.6 177 62.7
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 9.8e-48 195.7 128 73.4
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 8.3e-47 192.6 279 42.7
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 1.1e-46 192.2 113 81.4
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.9e-35 154.8 269 36.1
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.5e-35 154.5 139 56.8
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.2e-34 152.1 122 60.7
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-33 148.3 106 68.9
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 7.8e-29 132.9 95 71.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.1e-27 129.0 268 34.3
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 4.0e-25 120.6 120 51.7
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.8e-24 116.7 105 54.3
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 4.2e-22 110.5 83 62.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 5.4e-22 110.2 232 37.9
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 6.6e-20 103.2 75 68.0
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 1.9e-19 101.7 71 71.8
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 2.5e-19 101.3 56 91.1
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 9.6e-19 99.4 57 87.7
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 2.8e-18 97.8 71 69.0
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.1e-18 96.3 91 51.6
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-16 92.4 91 50.5
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.9e-14 85.1 55 72.7
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.7e-13 81.3 257 28.4
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 1.3e-12 79.0 277 25.3
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.9e-11 75.1 59 59.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.2e-08 65.9 109 36.7
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.6e-08 64.7 40 80.0
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 4.5e-08 63.9 36 83.3
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 1.1e-06 59.3 52 53.8


User provided reference genes

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