Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2334.3 1197 100.0
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2278.8 1232 95.5
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 1721.4 1238 73.5
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 1704.1 1246 72.8
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1691.8 1238 73.0
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 1687.9 1238 72.9
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 1685.6 1234 72.7
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1683.7 1238 72.8
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 1676.8 1236 72.6
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1676.0 1240 72.4
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1674.8 1238 72.3
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 1674.8 1237 72.4
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 1672.5 1219 73.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1667.9 1236 72.6
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 1664.0 1245 72.3
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 1663.3 1240 71.8
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 1659.0 1240 71.6
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 1652.9 1239 71.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 1648.6 1238 71.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 1645.2 1238 71.6
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1644.4 1242 71.2
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1638.6 1233 71.7
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 1637.1 1243 71.4
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 1636.3 1233 71.7
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1633.6 1234 71.2
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1622.1 1242 70.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1237 70.7
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1619.0 1236 71.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1617.4 1242 70.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1615.1 1234 71.1
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 1613.2 1237 69.5
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 1610.5 1242 70.0
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 1610.1 1244 70.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 1608.2 1240 70.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 1606.7 1234 70.6
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 1603.2 1242 70.0
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 1597.8 1297 67.7
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 1592.4 1236 69.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1590.5 1239 69.2
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 1582.0 1238 69.1
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1578.5 1238 69.1
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1578.5 1237 69.0
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1578.1 1239 68.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 1575.1 1243 68.9
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 1570.8 1235 69.5
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1565.4 1237 68.3
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1563.1 1251 69.0
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 1561.6 1206 69.7
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 1559.7 1233 66.6
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 1559.3 1245 68.2
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 1556.2 1245 68.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 1552.0 1237 68.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 1549.3 1245 67.6
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1546.2 1239 68.0
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1541.6 1242 67.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1537.7 1240 67.6
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1537.3 1235 67.2
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 1532.3 1235 67.2
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 1531.9 1234 68.4
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 1528.5 1244 67.6
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1519.2 1238 66.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1510.7 1243 66.6
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 1507.3 1239 65.6
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 1505.0 1250 65.7
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1504.6 1236 66.0
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 1503.8 1220 67.3
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1491.1 1247 65.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1489.2 1237 66.8
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 1479.9 1236 65.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 1479.5 1246 65.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 1462.6 1240 65.1
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 1460.7 1232 65.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 1460.7 1235 65.0
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1459.9 1239 65.2
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 1458.4 1235 65.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 1456.0 1233 63.9
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1438.7 1234 65.6
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1405.6 1246 63.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1405.2 1236 62.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1404.8 1279 61.5
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1395.9 1226 63.0
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1390.6 1238 61.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1389.0 1241 61.0
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1383.2 1244 60.9
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1382.5 1278 59.6
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1382.1 1235 62.9
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1374.4 1240 61.4
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1371.3 1276 59.8
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1371.3 1144 66.7
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1350.9 1246 59.6
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1349.0 1278 59.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1347.4 1277 59.0
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1347.4 1277 59.0
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1344.7 1310 57.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1344.3 1278 59.0
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1340.1 1259 59.4
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1335.1 1279 58.7
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1330.9 1293 57.8
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1315.4 1278 57.6
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1313.5 1291 57.2
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1313.5 1291 57.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1313.5 1290 57.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1308.5 1141 64.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1305.4 1277 57.2
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1305.4 1277 57.2
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1263.4 1252 56.9
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1226.1 1238 56.3
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1224.5 987 66.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1211.8 1121 61.1
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1188.7 1239 54.3
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1120.9 1308 51.0
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1111.7 1288 50.9
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1111.3 1289 50.5
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1111.3 1289 50.5
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1081.2 922 64.9
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 6.2e-302 1041.2 1225 51.7
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 8.1e-286 987.6 868 64.7
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 9.0e-277 957.6 737 68.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 3.2e-266 922.5 736 66.4
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 8.2e-254 881.3 880 60.0
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 2.6e-252 876.3 1180 45.9
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 1.1e-245 854.4 868 55.3
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.0e-244 850.1 1448 40.8
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-240 837.4 641 73.0
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.4e-239 832.8 685 68.9
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 1.7e-238 830.5 911 55.5
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 8.6e-227 791.6 773 60.4
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 9.2e-205 718.4 1215 39.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 2.5e-194 683.7 818 52.4
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 5.8e-191 672.5 495 68.7
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.9e-190 670.2 660 56.4
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 6.9e-184 649.0 648 53.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 5.8e-183 646.0 603 61.9
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 5.3e-176 622.9 709 51.8
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.2e-173 613.6 498 65.3
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.5e-162 578.2 625 54.1
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-151 541.6 332 76.8
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 4.2e-133 480.3 407 62.4
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.3e-129 466.5 407 61.2
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 1.9e-117 428.3 328 70.7
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.7e-111 407.9 1208 29.2
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 8.7e-70 270.0 225 69.3
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 9.6e-69 266.5 1908 23.2
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.9e-64 252.3 275 54.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 6.0e-63 247.3 198 71.7
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 5.6e-61 240.7 543 34.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 9.6e-61 240.0 154 77.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 4.5e-58 231.1 863 29.0
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.2e-56 224.9 362 40.9
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 2.9e-49 201.8 188 58.0
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 6.0e-47 194.1 227 54.2
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 3.7e-28 131.7 70 88.6
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 5.2e-14 84.7 56 69.6
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.7e-14 84.3 50 70.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 2.2e-09 69.3 33 87.9


User provided reference genes

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