Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 6.8e-157 557.4 301 100.0
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 2.9e-139 498.8 301 86.7
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 1.9e-135 486.1 305 88.2
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 7.4e-135 484.2 302 82.8
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 9.6e-135 483.8 304 83.6
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.1e-134 482.6 306 83.3
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 3.7e-134 481.9 304 84.9
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 4.8e-134 481.5 306 83.0
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 8.1e-134 480.7 305 86.2
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.4e-133 479.9 306 83.0
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.4e-133 479.9 306 83.0
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 5.3e-133 478.0 302 82.1
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 5.3e-133 478.0 305 84.9
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 5.3e-133 478.0 305 84.6
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 5.3e-133 478.0 305 84.6
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 9.0e-133 477.2 306 82.0
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.2e-132 476.9 304 82.9
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 2.6e-132 475.7 306 82.4
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 3.4e-132 475.3 304 82.6
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 4.5e-132 474.9 303 84.2
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 9.9e-132 473.8 304 81.2
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 2.9e-131 472.2 305 80.3
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 6.4e-131 471.1 308 80.5
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 8.4e-131 470.7 306 81.0
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.1e-130 470.3 305 83.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 1.9e-130 469.5 304 82.9
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 2.4e-130 469.2 304 83.2
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 3.2e-130 468.8 305 80.3
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 4.2e-130 468.4 305 84.6
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 2.7e-129 465.7 305 80.3
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.0e-128 463.8 303 82.5
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 1.0e-128 463.8 304 81.9
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 1.3e-128 463.4 301 81.4
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.3e-128 462.6 306 81.7
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 2.3e-128 462.6 304 81.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 3.0e-128 462.2 302 81.8
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 3.9e-128 461.8 306 80.1
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.1e-128 461.5 301 77.7
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 6.7e-128 461.1 302 81.8
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 3.3e-127 458.8 293 80.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 5.6e-127 458.0 309 78.0
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 7.4e-127 457.6 301 81.1
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 9.6e-127 457.2 305 79.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 9.6e-127 457.2 305 78.0
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 9.6e-127 457.2 304 80.6
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.8e-126 455.7 305 79.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 3.7e-126 455.3 301 77.1
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.4e-125 453.4 301 79.1
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.4e-125 453.4 302 81.1
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 4.0e-125 451.8 301 78.7
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 9.0e-125 450.7 305 77.0
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 9.0e-125 450.7 304 79.9
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 1.5e-124 449.9 304 76.6
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 2.6e-124 449.1 305 79.7
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 3.4e-124 448.7 305 79.0
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 4.5e-124 448.4 304 78.6
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.5e-124 448.4 304 78.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 4.5e-124 448.4 304 78.0
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.8e-124 448.0 303 78.5
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 5.8e-124 448.0 305 76.7
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 7.6e-124 447.6 302 79.8
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 2.2e-123 446.0 305 76.1
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 2.2e-123 446.0 306 78.4
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 2.9e-123 445.7 303 75.9
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 3.8e-123 445.3 304 78.3
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 4.9e-123 444.9 310 78.1
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.9e-123 444.9 304 78.3
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 6.5e-123 444.5 306 79.1
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 1.4e-122 443.4 300 79.7
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.5e-122 442.6 301 78.4
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 3.2e-122 442.2 304 75.3
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 7.1e-122 441.0 286 81.5
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 9.3e-122 440.7 304 76.3
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 9.3e-122 440.7 305 78.4
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 314 74.5
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 314 74.5
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 1.2e-121 440.3 314 74.5
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 2.1e-121 439.5 304 78.0
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 2.7e-121 439.1 305 75.1
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 1.0e-120 437.2 301 77.7
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.3e-120 436.0 301 76.1
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 3.0e-120 435.6 306 74.8
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 3.9e-120 435.3 302 73.5
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 8.7e-120 434.1 301 75.4
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 1.1e-119 433.7 303 74.3
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 1.9e-119 433.0 304 77.6
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.3e-119 432.2 301 76.1
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.3e-119 431.8 293 76.5
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 7.4e-119 431.0 301 75.4
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 2.2e-118 429.5 301 75.4
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-117 427.2 305 76.7
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.4e-117 426.0 302 73.2
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 3.1e-117 425.6 304 75.7
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 4.1e-117 425.2 305 76.1
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.5e-116 423.3 304 75.7
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 2.6e-116 422.5 304 75.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 5.0e-115 418.3 304 75.3
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 8.5e-115 417.5 301 73.1
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 4.2e-114 415.2 304 75.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 4.2e-114 415.2 304 75.0
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 4.2e-114 415.2 304 75.0
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.2e-114 414.5 301 74.4
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 9.3e-114 414.1 305 74.8
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 1.2e-113 413.7 301 72.4
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 1.2e-113 413.7 301 72.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.4e-112 410.2 302 74.5
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 3.9e-112 408.7 306 69.3
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.5e-111 406.8 283 79.5
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 5.7e-111 404.8 312 71.2
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.2e-108 397.1 298 70.5
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.5e-108 396.7 302 68.2
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 1.7e-107 393.3 304 70.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 9.4e-106 387.5 302 68.5
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 2.0e-103 379.8 304 73.0
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 1.5e-100 370.2 301 64.8
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 5.0e-99 365.2 290 69.7
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.8e-94 348.6 304 60.9
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 4.5e-92 342.0 323 57.9
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 1.2e-87 327.4 195 79.0
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.0e-83 314.3 251 71.3
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 2.7e-81 306.2 301 58.1
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 3.0e-80 302.8 297 58.2
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 6.8e-80 301.6 302 55.0
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 5.7e-79 298.5 251 64.9
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 2.5e-74 283.1 301 57.1
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 1.4e-64 250.8 300 49.7
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 2.3e-64 250.0 134 88.8
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 5.8e-63 245.4 200 69.5
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 6.4e-62 241.9 271 56.5
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 6.2e-57 225.3 190 70.5
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 3.1e-56 223.0 208 63.0
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 2.7e-52 209.9 192 66.7
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 1.6e-49 200.7 164 73.2
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 2.1e-49 200.3 306 43.8
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.8e-49 199.9 192 66.1
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 6.8e-48 195.3 293 45.1
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 7.3e-42 175.3 201 50.2
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 8.1e-41 171.8 232 50.9
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 3.8e-38 162.9 104 74.0
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 1.1e-37 161.4 111 73.0
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 1.2e-33 147.9 181 48.1
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 2.4e-32 143.7 105 67.6
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 1.9e-29 134.0 218 44.5
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 1.3e-22 111.3 152 52.6
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 2.2e-22 110.5 80 68.8
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 1.1e-21 108.2 80 66.2
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 1.6e-20 104.4 61 77.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 3.9e-19 99.8 71 67.6
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 5.1e-19 99.4 301 33.9
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 1.5e-18 97.8 301 33.9
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.2e-15 88.2 113 57.5
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.6e-15 87.0 114 53.5
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 4.2e-13 79.7 98 60.2
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 3.5e-12 76.6 96 55.2
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 6.0e-12 75.9 128 48.4
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 1.4e-08 64.7 79 55.7


User provided reference genes

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