Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 6.6e-122 440.7 213 100.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 5.3e-71 271.6 192 71.9
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 3.8e-69 265.4 192 70.3
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 3.8e-69 265.4 192 72.9
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 6.5e-69 264.6 192 70.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 1.2e-67 260.4 190 69.5
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-67 260.4 189 68.8
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-67 260.4 189 67.7
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 2.1e-67 259.6 190 68.9
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.7e-67 259.2 190 68.9
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.8e-66 256.5 192 69.8
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.5e-65 253.4 189 66.7
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 4.3e-65 251.9 187 66.8
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 5.7e-65 251.5 192 65.6
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 1.7e-64 250.0 192 66.1
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 6.3e-64 248.1 192 67.2
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 6.3e-64 248.1 189 65.6
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 1.8e-63 246.5 193 66.8
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.5e-62 243.4 189 64.0
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.5e-62 243.4 189 65.1
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 3.4e-62 242.3 177 69.5
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 7.7e-62 241.1 192 65.1
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 1.3e-61 240.4 189 64.6
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.1e-60 237.3 192 65.6
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.9e-60 236.5 189 61.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.9e-60 236.5 207 57.0
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.9e-60 236.5 192 64.1
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 1.9e-60 236.5 192 63.0
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 1.9e-60 236.5 195 63.1
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 2.5e-60 236.1 199 63.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 3.2e-60 235.7 190 61.1
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 5.5e-60 235.0 192 63.0
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 7.2e-60 234.6 190 58.4
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 9.4e-60 234.2 194 57.2
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 9.4e-60 234.2 201 61.7
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.2e-59 233.8 198 62.1
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.6e-59 233.4 192 61.5
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 2.1e-59 233.0 192 62.5
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 6.1e-59 231.5 192 63.0
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.8e-58 229.9 189 61.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.0e-58 229.2 226 56.2
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 3.0e-58 229.2 226 56.2
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 6.7e-58 228.0 192 63.5
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 8.8e-58 227.6 190 57.4
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 8.8e-58 227.6 192 60.4
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.0e-57 226.5 192 60.4
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 3.3e-57 225.7 208 52.9
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 5.7e-57 224.9 190 57.4
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 1.7e-56 223.4 192 56.8
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.8e-56 222.6 190 60.0
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.7e-56 222.2 206 56.8
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.7e-56 222.2 206 56.8
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 6.3e-56 221.5 180 61.1
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 6.3e-56 221.5 192 59.4
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.1e-55 219.2 191 57.1
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 3.1e-55 219.2 204 56.9
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 4.1e-55 218.8 192 60.9
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 5.3e-55 218.4 190 53.7
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 5.3e-55 218.4 208 52.9
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 9.1e-55 217.6 183 60.7
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 9.1e-55 217.6 206 56.3
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 2.0e-54 216.5 196 60.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 7.7e-54 214.5 206 51.5
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.0e-53 214.2 189 59.8
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.0e-53 214.2 189 54.5
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.3e-53 213.8 192 57.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 2.2e-53 213.0 190 52.1
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 3.8e-53 212.2 190 55.8
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 3.8e-53 212.2 191 58.6
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 6.5e-53 211.5 196 57.1
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 8.5e-53 211.1 203 51.7
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-52 210.3 190 52.6
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 1.5e-52 210.3 190 52.6
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 1.5e-52 210.3 190 52.6
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 2.5e-52 209.5 194 56.2
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 5.5e-52 208.4 192 56.8
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 9.4e-52 207.6 191 54.5
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 9.4e-52 207.6 183 59.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 2.1e-51 206.5 207 54.1
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 2.7e-51 206.1 204 54.4
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 5.2e-50 201.8 190 51.6
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 8.8e-50 201.1 189 57.1
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 5.7e-49 198.4 190 52.1
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.2e-48 196.4 193 56.5
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 2.2e-48 196.4 189 53.4
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.7e-48 195.7 189 50.8
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 4.8e-48 195.3 196 50.5
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 6.3e-48 194.9 219 50.2
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.1e-47 194.1 189 56.6
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 7.0e-47 191.4 219 44.7
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 1.2e-46 190.7 189 50.8
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.6e-46 190.3 189 56.1
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 2.0e-46 189.9 189 50.3
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 2.7e-46 189.5 191 50.3
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.0e-45 187.6 196 54.1
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 1.7e-45 186.8 180 51.7
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 1.7e-45 186.8 176 55.1
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.2e-45 186.4 190 46.3
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.9e-45 186.0 171 56.7
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.2e-44 182.6 136 64.0
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 3.2e-44 182.6 258 41.1
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 7.2e-44 181.4 192 50.5
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.4e-44 181.0 136 64.0
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 3.6e-43 179.1 134 66.4
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 6.1e-43 178.3 136 64.0
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.0e-42 177.6 189 49.7
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 1.4e-42 177.2 123 65.0
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.4e-42 177.2 130 66.9
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.3e-42 176.4 189 53.4
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 1.2e-41 174.1 190 45.3
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 3.6e-35 152.5 126 57.1
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 9.8e-33 144.4 98 69.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 9.8e-33 144.4 201 42.8
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 6.3e-32 141.7 190 43.2
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 8.3e-32 141.4 116 58.6
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.3e-29 134.0 201 35.8
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.7e-29 133.7 98 62.2
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.7e-29 133.7 92 68.5
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 6.6e-29 131.7 96 66.7
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-28 131.0 116 57.8
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-28 130.6 158 48.1
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.9e-28 130.2 120 57.5
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.6e-27 127.1 203 39.4
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.0e-26 122.9 101 63.4
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.6e-25 119.8 98 63.3
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-23 113.6 109 55.0
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-22 110.5 76 73.7
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 2.0e-22 110.2 118 53.4
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 5.9e-22 108.6 70 75.7
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 3.6e-19 99.4 118 44.1
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 8.0e-19 98.2 94 46.8
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.4e-18 97.4 116 44.0
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 2.3e-18 96.7 68 67.6
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.0e-18 95.9 71 62.0
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 1.1e-15 87.8 114 47.4
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 3.5e-14 82.8 75 53.3
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.9e-12 77.0 126 35.7
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.4e-10 70.9 48 60.4
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-08 63.9 60 55.0
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 4.9e-08 62.4 41 65.9
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 1.1e-07 61.2 41 63.4
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-07 61.2 79 43.0
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 7.1e-07 58.5 121 28.9
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.2e-06 57.8 47 51.1
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.7e-06 56.6 42 66.7
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 6.0e-06 55.5 127 29.1
TWI75G1574 Tripterygium wilfordii HOM05D004044 ORTHO05D004841 7.8e-06 55.1 127 29.9
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.8e-06 55.1 38 68.4


User provided reference genes

Program Settings