Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1148.3 566 100.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 561 95.5
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 568 94.5
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 568 94.5
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 563 94.8
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 568 94.4
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 562 95.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 562 94.8
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 568 94.2
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 566 94.5
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 562 94.8
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1092.8 562 94.8
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1091.6 564 94.1
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1091.3 562 94.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1090.5 565 94.2
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1088.9 565 94.5
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 561 94.1
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1088.2 561 94.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 564 94.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1087.0 564 94.1
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1086.6 562 93.8
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 563 93.8
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1085.1 559 94.3
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 561 93.0
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1084.3 564 93.8
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 561 93.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1082.8 564 93.8
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 564 93.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1081.2 566 93.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 561 93.6
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1080.9 561 93.2
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 563 93.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1080.1 561 93.8
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 92.9
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 93.4
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 93.6
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 564 93.1
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 562 93.1
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 561 92.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1078.5 558 93.9
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 561 93.4
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 564 93.1
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 558 93.7
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 594 89.7
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 561 92.9
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 564 92.7
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 557 94.3
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 558 93.4
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 3.9e-312 1074.7 561 93.4
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 3.9e-312 1074.3 564 92.2
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 7.7e-312 1073.2 561 92.9
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 564 93.3
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.5e-311 1072.0 564 92.0
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 1.9e-311 1071.6 561 92.5
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 561 93.6
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 2.7e-311 1071.2 564 92.9
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 1.0e-310 1069.3 562 93.2
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 579 90.5
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 3.8e-310 1067.4 561 92.7
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.5e-309 1065.4 564 91.3
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 564 91.1
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 564 91.0
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 3.2e-309 1064.3 565 91.2
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.2e-309 1063.9 564 91.0
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.2e-309 1063.9 566 94.2
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 7.2e-309 1063.1 565 91.2
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 9.4e-309 1062.8 561 92.0
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 1.6e-308 1062.0 564 91.7
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 564 90.6
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 564 90.6
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 559 90.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 6.1e-308 1060.1 564 91.5
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 8.0e-308 1059.7 561 92.2
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.4e-307 1058.9 600 87.7
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 564 90.4
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 564 90.4
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 6.8e-307 1056.6 563 91.1
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 8.8e-307 1056.2 565 91.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 3.4e-306 1054.3 566 91.5
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 618 84.8
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.2e-305 1051.6 561 90.2
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 6.3e-305 1050.0 553 92.0
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.4e-304 1048.9 552 92.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.4e-304 1048.9 566 91.0
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 5.3e-304 1047.0 561 91.8
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 2.7e-303 1044.6 561 90.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 5.0e-302 1040.4 577 89.3
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 5.5e-301 1036.9 591 86.8
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 6.8e-299 1030.0 555 88.5
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.3e-297 1025.8 521 95.2
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.5e-295 1017.3 556 87.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 557 87.3
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 557 87.3
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 1.9e-293 1011.9 539 89.6
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.8e-283 978.8 521 90.6
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 4.3e-277 957.6 487 93.8
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 1.2e-274 949.5 493 93.3
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.0e-266 922.2 454 96.9
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 1.2e-263 912.9 564 81.0
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.0e-262 909.8 542 80.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 5.8e-250 867.5 543 77.9
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 4.8e-236 821.2 561 75.0
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 1.4e-235 819.7 406 96.8
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 6.9e-235 817.4 536 78.9
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.2e-232 808.1 420 94.5
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.3e-230 803.1 566 74.7
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 5.8e-226 787.7 521 77.5
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.4e-224 783.1 521 77.2
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.0e-222 775.4 506 75.5
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.6e-220 769.6 561 71.5
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.4e-219 765.8 564 71.1
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.1e-219 765.0 560 72.1
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.1e-211 740.3 388 92.5
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 4.2e-208 728.4 566 67.0
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.0e-194 682.9 503 71.2
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.4e-190 670.2 329 97.0
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 6.6e-169 598.2 313 90.1
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 1.5e-157 560.5 508 61.0
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 5.4e-147 525.4 555 55.1
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.1e-146 523.5 262 95.0
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.5e-138 496.1 462 58.0
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 2.6e-133 479.9 299 80.9
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 9.3e-131 471.5 565 50.8
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 7.9e-130 468.4 259 90.3
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 2.3e-129 466.8 505 53.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 8.1e-127 458.4 293 78.5
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-126 456.8 385 64.4
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.9e-122 441.8 499 50.1
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 8.7e-121 438.3 562 48.0
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 2.5e-115 420.2 238 89.5
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 1.2e-114 417.9 350 63.4
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.0e-108 398.3 196 95.4
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-98 363.6 245 75.5
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 7.4e-96 355.5 269 68.0
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 9.1e-94 348.6 214 78.5
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.4e-93 346.7 167 98.8
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-92 344.4 300 64.0
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.9e-91 340.9 183 86.3
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-86 325.1 321 58.3
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 5.9e-85 319.3 154 96.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.5e-84 315.5 160 92.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 2.5e-83 313.9 156 96.2
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 4.1e-70 270.0 156 85.3
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 3.8e-68 263.5 159 82.4
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 1.3e-63 248.4 152 82.2
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-52 212.2 122 86.1
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 9.5e-51 205.7 105 95.2
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 5.8e-48 196.4 126 77.8
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 6.0e-45 186.4 279 44.1
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 7.8e-45 186.0 113 83.2
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 8.6e-44 182.6 134 68.7
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 3.6e-34 150.6 98 80.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 2.1e-29 134.8 144 54.9
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.0e-28 131.0 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 8.1e-26 122.9 73 84.9
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 3.4e-24 117.5 86 74.4
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 6.9e-17 93.2 63 73.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 4.5e-16 90.5 52 84.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-15 88.6 43 93.0
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.8e-15 87.4 88 60.2
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 3.8e-15 87.4 49 85.7
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 3.9e-12 77.4 60 70.0
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 5.6e-11 73.6 60 66.7
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 3.4e-08 64.3 54 66.7
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 9.3e-06 56.2 31 80.6


User provided reference genes

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