Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 1.8e-232 808.9 406 100.0
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 3.2e-210 734.9 409 91.2
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 7.2e-210 733.8 406 90.6
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 1.8e-208 729.2 409 89.5
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 3.0e-208 728.4 406 90.1
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 5.2e-208 727.6 406 89.4
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 3.3e-207 724.9 407 89.2
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 2.2e-206 722.2 406 88.9
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 2.8e-206 721.8 405 88.6
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 6.3e-206 720.7 407 89.7
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 7.0e-205 717.2 407 89.4
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.6e-204 716.1 408 89.0
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.3e-203 713.0 403 88.6
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 8.5e-203 710.3 411 88.6
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 1.1e-202 709.9 408 87.5
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.9e-202 709.1 406 88.4
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 3.2e-202 708.4 409 89.2
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 5.5e-202 707.6 410 87.6
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 5.5e-202 707.6 406 88.7
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 5.5e-202 707.6 408 88.2
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 7.2e-202 707.2 404 88.1
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 7.2e-202 707.2 406 88.9
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 9.4e-202 706.8 413 87.4
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 1.6e-201 706.1 410 87.8
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 2.1e-201 705.7 409 87.8
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 2.7e-201 705.3 406 88.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 2.7e-201 705.3 406 86.9
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.6e-201 704.9 406 87.9
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 4.7e-201 704.5 417 86.1
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 6.1e-201 704.1 408 88.0
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 8.0e-201 703.7 407 88.2
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.0e-200 703.4 408 87.7
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 1.0e-200 703.4 423 86.3
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.3e-200 702.2 406 86.7
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 3.0e-200 701.8 406 87.7
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 4.0e-200 701.4 407 88.9
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 8.8e-200 700.3 407 86.2
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 1.5e-199 699.5 371 93.0
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 2.0e-199 699.1 407 87.2
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.3e-199 698.4 408 87.3
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 4.4e-199 698.0 407 87.0
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.4e-199 698.0 408 87.5
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 7.5e-199 697.2 406 87.9
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 7.5e-199 697.2 422 85.5
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 1.7e-198 696.0 407 86.7
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 6.3e-198 694.1 409 86.6
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 8.2e-198 693.7 411 86.1
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.4e-197 692.2 408 86.3
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 5.3e-197 691.0 411 85.6
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 5.3e-197 691.0 405 86.7
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 5.3e-197 691.0 407 87.2
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 7.0e-197 690.6 411 85.2
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 7.0e-197 690.6 408 86.3
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 1.6e-196 689.5 411 85.6
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.6e-196 689.5 408 86.8
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 2.0e-196 689.1 411 85.4
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 2.0e-196 689.1 410 85.4
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 2.0e-196 689.1 411 85.4
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 2.0e-196 689.1 410 85.4
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.0e-196 689.1 405 86.4
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 2.7e-196 688.7 405 86.4
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 2.7e-196 688.7 405 86.4
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 2.7e-196 688.7 410 86.1
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 4.5e-196 688.0 411 85.4
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 7.7e-196 687.2 410 85.1
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 408 85.8
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.7e-195 686.0 410 84.6
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 1.7e-195 686.0 418 84.4
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 3.8e-195 684.9 411 85.4
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 5.0e-195 684.5 407 86.2
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 5.0e-195 684.5 407 86.2
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 5.0e-195 684.5 429 83.4
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 6.5e-195 684.1 411 85.4
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.1e-194 683.3 410 85.4
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 1.5e-194 682.9 406 86.5
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 1.9e-194 682.6 417 84.4
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 4.2e-194 681.4 406 86.2
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 5.5e-194 681.0 405 85.2
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 7.2e-194 680.6 407 84.8
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 1.2e-193 679.9 406 86.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 1.2e-193 679.9 407 84.8
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 1.6e-193 679.5 406 86.0
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 85.4
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 3.6e-193 678.3 410 85.4
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 1.8e-192 676.0 415 83.9
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 3.0e-192 675.2 408 83.1
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 3.0e-192 675.2 410 83.7
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 5.2e-192 674.5 416 83.2
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 5.2e-192 674.5 406 84.0
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 8.8e-192 673.7 409 84.4
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.2e-191 673.3 412 84.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.0e-191 672.5 408 85.5
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 2.6e-191 672.2 410 83.9
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.6e-191 672.2 413 83.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 4.4e-191 671.4 407 81.6
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 9.8e-191 670.2 407 84.3
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 1.7e-190 669.5 406 83.3
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 6.3e-190 667.5 372 89.5
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 6.3e-190 667.5 384 87.8
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 6.3e-190 667.5 381 87.7
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 4.1e-189 664.8 406 83.5
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 5.4e-189 664.5 409 83.4
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 5.4e-189 664.5 410 82.4
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 2.7e-188 662.1 411 82.5
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.5e-188 661.4 378 86.8
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 4.2e-186 654.8 424 79.7
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 8.6e-179 630.6 333 92.2
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 6.8e-176 620.9 376 83.8
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.3e-174 614.0 408 77.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.4e-173 613.2 410 79.5
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.8e-173 612.8 361 81.4
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 3.2e-173 612.1 353 83.9
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 1.6e-172 609.8 364 81.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 7.3e-170 600.9 402 74.6
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 1.6e-164 583.2 402 77.1
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.2e-161 573.5 346 83.8
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.5e-151 540.0 357 73.1
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 3.8e-150 535.4 319 85.3
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.9e-150 535.0 321 85.0
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 1.4e-149 533.5 338 82.5
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.1e-146 523.9 384 66.7
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 6.2e-145 518.1 309 84.5
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 1.5e-143 513.5 405 70.4
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 2.7e-140 502.7 281 87.2
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.0e-139 500.7 345 71.0
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 2.2e-134 483.0 290 85.5
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.8e-134 482.3 364 66.8
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 3.2e-133 479.2 304 82.2
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.0e-131 474.2 376 63.6
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 2.3e-131 473.0 248 93.1
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 1.8e-120 436.8 285 78.9
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 4.6e-116 422.2 282 76.2
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.1e-101 374.4 290 66.2
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 5.1e-99 365.5 319 64.3
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.3e-59 233.8 132 87.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.1e-59 233.4 132 86.4
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 1.8e-51 207.6 395 36.2
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 1.9e-48 197.6 118 81.4
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 2.4e-48 197.2 118 80.5
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.3e-43 180.6 104 87.5
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.2e-42 178.3 103 87.4
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.2e-42 178.3 103 87.4
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 4.3e-37 159.8 94 85.1
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.2e-36 158.3 101 78.2
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.7e-33 147.9 94 76.6
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.9e-29 134.4 99 71.7
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.1e-27 128.6 105 69.5
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 2.0e-26 124.4 125 56.8
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.3e-24 115.5 71 74.6
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 1.7e-22 111.3 75 74.7
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 1.1e-21 108.6 62 88.7
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 2.1e-20 104.4 81 69.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 2.4e-19 100.9 47 91.5
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 6.9e-19 99.4 75 70.7
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358071 Lupinus albus HOM05D004558 ORTHO05D239964 4.8e-12 76.6 80 57.5
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7
MSTRG.26191 Avicennia marina HOM05D004558 ORTHO05D087779 4.6e-07 60.1 53 60.4


User provided reference genes

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