Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 2635.9 1316 100.0
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1779.6 1332 67.5
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1761.5 1335 66.8
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1747.3 1334 65.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1740.7 1322 66.9
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1724.5 1335 65.5
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1724.5 1332 65.8
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1720.7 1335 64.8
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1710.7 1336 65.3
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1705.3 1334 65.3
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1696.4 1339 64.7
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1691.4 1328 65.1
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1681.4 1333 63.2
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1681.4 1329 64.4
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1677.5 1329 64.3
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1676.8 1329 64.1
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1672.9 1266 65.4
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1670.2 1329 64.0
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1659.0 1334 63.6
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1654.8 1344 63.0
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1654.8 1329 64.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1648.3 1400 60.1
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1640.2 1333 62.9
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1636.3 1245 64.6
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1634.4 1336 61.2
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1633.2 1326 63.1
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1622.4 1338 62.3
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1621.3 1336 60.4
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1620.9 1335 61.5
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1614.0 1294 62.3
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1614.0 1325 61.2
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1611.7 1369 61.4
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1610.1 1329 61.2
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1606.3 1294 62.1
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1601.3 1337 61.5
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1600.5 1220 65.9
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1600.1 1325 61.2
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1595.5 1335 60.8
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1595.5 1331 60.8
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1595.1 1334 60.9
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1593.6 1220 65.7
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1592.0 1476 56.4
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1333 60.2
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1587.4 1333 60.5
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1586.2 1342 59.9
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1585.9 1333 60.7
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1582.0 1334 60.5
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1580.8 1333 61.0
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1575.8 1335 60.1
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1573.9 1338 59.4
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1563.9 1329 60.1
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1561.6 1331 60.1
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1549.3 1339 59.7
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1548.5 1339 59.1
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1543.9 1334 59.3
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1541.9 1341 58.8
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1540.4 1339 59.4
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1539.6 1333 59.1
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1539.6 1336 59.7
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1534.2 1314 59.0
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1529.6 1343 58.2
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1528.8 1332 59.8
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1523.1 1335 58.7
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1519.6 1338 59.4
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1519.6 1337 58.7
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1503.4 1325 57.7
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1503.0 1336 57.7
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1498.0 1342 59.0
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1493.8 1344 58.8
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1484.5 1331 57.9
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1483.8 1342 58.1
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1471.1 1341 58.2
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1433.7 1328 57.0
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1417.1 1339 56.3
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1411.0 1340 55.7
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1408.7 1334 56.1
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1400.6 1315 56.8
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1398.3 1323 54.8
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1394.8 1315 56.6
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1387.1 1255 56.8
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1382.9 1315 56.1
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1376.7 1315 55.9
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1376.7 1315 55.9
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1371.7 1340 55.2
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1369.4 1316 55.9
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1369.0 1320 55.3
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1368.2 1337 55.4
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1265.8 1322 51.7
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1262.7 1321 50.2
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1252.7 1329 50.3
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1252.3 1103 59.4
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1225.3 1318 50.4
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1224.9 1318 50.6
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1220.3 985 63.9
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1213.7 906 65.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1207.2 989 63.2
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1117.1 1251 49.2
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1096.3 859 64.4
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 6.9e-286 988.0 1329 42.1
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 4.4e-285 985.3 1322 45.8
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.5e-259 899.8 1281 42.0
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 4.4e-240 835.9 1133 41.6
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.8e-239 833.2 1330 38.9
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 3.2e-235 819.7 1324 38.7
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 4.1e-230 802.7 948 47.0
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.4e-176 623.6 586 58.5
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.1e-174 618.6 593 53.6
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.9e-167 593.2 482 61.4
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 1.4e-126 458.8 1161 30.0
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 4.8e-106 390.6 291 63.6
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 1.1e-102 379.4 323 59.4
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 1.3e-98 365.9 377 52.0
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 2.7e-96 358.2 334 55.7
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.9e-94 352.1 1057 30.1
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.5e-86 325.9 265 66.8
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 4.0e-68 264.6 323 46.7
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.6e-62 243.4 202 62.4
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 1.2e-56 226.5 314 43.9
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 6.6e-55 220.7 232 49.1
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.6e-54 217.6 185 61.1
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.6e-48 199.5 154 62.3
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.5e-38 166.4 127 66.9
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.2e-35 156.8 119 63.0
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 1.9e-33 149.4 662 26.3
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 3.8e-26 125.2 123 52.8
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 5.0e-18 98.2 74 64.9
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.0e-14 86.3 102 41.2
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 5.9e-11 74.7 103 42.7
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.0e-07 62.4 65 55.4


User provided reference genes

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