Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 0.0e+00 1265.4 639 100.0
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 2.8e-240 835.5 641 69.3
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 2.3e-234 815.8 653 65.8
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 3.1e-231 805.4 645 65.1
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.6e-230 802.4 648 65.3
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 9.8e-230 800.4 650 64.3
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 9.8e-230 800.4 649 64.4
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 2.2e-229 799.3 649 65.6
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.4e-228 795.8 654 64.5
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 3.2e-228 795.4 653 64.3
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 4.1e-228 795.0 652 62.7
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 2.7e-227 792.3 650 64.2
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.0e-226 790.4 650 65.2
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.5e-225 786.6 649 65.0
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 9.5e-225 783.9 653 63.1
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.2e-224 783.5 648 64.2
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.6e-224 781.9 649 62.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 8.1e-224 780.8 655 62.0
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 2.6e-222 775.8 650 62.9
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 5.8e-222 774.6 654 62.2
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 7.6e-222 774.2 652 62.3
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.3e-221 773.5 644 63.8
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.7e-221 773.1 653 62.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.9e-221 772.3 640 63.4
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 6.4e-221 771.2 653 62.6
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 3.2e-220 768.8 636 64.0
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.7e-219 765.8 640 62.7
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 3.5e-219 765.4 646 62.1
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.5e-219 765.4 650 62.0
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 2.3e-218 762.7 650 62.8
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 2.3e-218 762.7 655 61.1
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.1e-218 761.5 644 61.3
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.1e-218 761.5 644 61.3
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 6.6e-218 761.1 656 62.3
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.2e-216 756.9 658 60.8
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 2.8e-216 755.7 667 61.6
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.7e-216 755.0 662 61.8
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 5.2e-215 751.5 644 60.7
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 5.2e-215 751.5 634 62.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.2e-214 750.4 644 60.9
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 4.4e-214 748.4 685 59.1
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-214 748.0 660 61.5
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 7.6e-214 747.7 640 59.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 7.6e-214 747.7 643 61.4
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.3e-213 746.9 658 60.6
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.7e-213 746.5 704 58.2
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 3.8e-213 745.3 631 62.8
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 3.8e-213 745.3 632 62.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 8.4e-213 744.2 635 62.0
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 9.3e-212 740.7 634 61.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 1.6e-211 740.0 644 60.9
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.6e-211 740.0 632 63.1
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 4.6e-211 738.4 632 63.0
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 2.3e-210 736.1 634 62.0
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.5e-209 733.4 652 60.1
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 9.6e-209 730.7 651 59.6
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.8e-208 729.2 647 60.6
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.6e-208 728.8 683 57.5
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 8.1e-208 727.6 643 60.0
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 4.9e-205 718.4 649 59.6
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.4e-204 716.8 635 60.6
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 2.4e-204 716.1 613 63.1
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 4.2e-204 715.3 651 59.4
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 3.5e-203 712.2 638 58.9
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 6.0e-203 711.4 642 60.0
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 6.0e-203 711.4 639 59.0
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 7.9e-203 711.1 639 58.5
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.5e-201 706.8 633 60.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 2.8e-200 702.6 639 58.5
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 3.6e-200 702.2 632 59.0
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.1e-199 700.7 639 58.8
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.1e-199 700.7 632 60.0
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 1.9e-196 689.9 637 58.1
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.7e-195 686.0 631 57.7
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 3.9e-194 682.2 636 56.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.1e-193 680.6 638 57.7
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.1e-193 680.6 638 57.7
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.3e-192 677.2 638 56.3
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.8e-192 676.0 680 54.6
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 3.7e-192 675.6 638 56.7
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 8.1e-192 674.5 638 56.7
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 3.4e-190 669.1 889 46.1
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 6.5e-189 664.8 663 54.3
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.5e-188 662.9 637 57.0
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 4.2e-188 662.1 875 46.3
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 8.7e-186 654.4 639 55.6
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.4e-183 646.4 645 56.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 1.5e-182 643.7 649 54.7
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 2.7e-179 632.9 767 48.8
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 2.3e-178 629.8 544 62.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 3.9e-178 629.0 627 53.9
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-177 627.5 636 53.5
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.9e-177 626.7 603 56.9
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.4e-177 624.8 498 65.5
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 4.8e-176 622.1 655 52.7
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.5e-172 609.8 642 52.2
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 2.1e-163 580.1 651 52.7
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 1.3e-141 507.7 633 46.1
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.5e-137 494.2 693 42.0
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 8.3e-136 488.4 385 63.6
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 2.9e-133 479.9 476 56.5
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 8.6e-133 478.4 503 54.5
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 4.7e-131 472.6 693 41.3
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 5.4e-127 459.1 399 59.6
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.6e-118 431.0 646 42.7
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 9.0e-82 308.9 362 47.0
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-80 305.1 347 47.3
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.5e-78 297.0 267 62.2
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.9e-76 291.2 373 45.0
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.8e-72 276.9 354 43.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.8e-69 268.1 248 60.9
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.3e-68 263.8 241 60.6
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 5.9e-65 253.1 257 55.6
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 2.3e-61 241.1 632 31.0
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 8.2e-59 232.6 373 39.7
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 8.5e-56 222.6 521 32.1
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.6e-54 218.4 212 57.1
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 1.0e-53 215.7 162 61.1
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 1.1e-47 195.7 124 71.8
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.5e-44 185.3 164 54.3
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.9e-40 171.0 226 47.8
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 3.3e-36 157.5 182 45.6
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 1.4e-29 135.6 93 66.7
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 3.0e-29 134.4 171 46.2
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 5.7e-28 130.2 85 69.4
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 9.8e-28 129.4 175 43.4
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.3e-24 118.2 122 54.1
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.1e-23 115.9 109 55.0
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.2e-21 107.1 192 33.3
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 4.4e-20 104.0 190 32.6
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 3.1e-18 97.8 99 56.6
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 7.0e-18 96.7 64 73.4
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 9.2e-18 96.3 97 60.8
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 2.2e-11 75.1 120 32.5
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.7e-08 65.5 188 29.3
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.3e-07 61.2 47 59.6
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.8e-06 58.2 42 54.8
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.8e-06 58.2 42 54.8


User provided reference genes

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