Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00274 Eucalyptus grandis HOM05D000070 ORTHO05D005931 8.5e-199 696.8 355 100.0
Eucgr.A00078 Eucalyptus grandis HOM05D000070 ORTHO05D005931 1.1e-185 653.3 338 98.5
COL.COLO4_20908 Corchorus olitorius HOM05D000070 ORTHO05D005931 2.0e-155 552.7 336 82.4
Cpa.g.sc9.267 Carica papaya HOM05D000070 ORTHO05D005931 9.9e-155 550.4 336 83.3
Gohir.A05G327300 Gossypium hirsutum HOM05D000070 ORTHO05D005931 6.4e-154 547.7 336 81.2
Gohir.D05G327400 Gossypium hirsutum HOM05D000070 ORTHO05D005931 5.4e-153 544.7 336 80.4
Gorai.009G351300 Gossypium raimondii HOM05D000070 ORTHO05D005931 1.6e-152 543.1 336 80.4
RcHm_v2.0_Chr4g0406861 Rosa chinensis HOM05D000070 ORTHO05D005931 6.0e-152 541.2 336 82.4
PGR083G1687 Punica granatum HOM05D000070 ORTHO05D005931 1.3e-151 540.0 336 81.2
Thecc.04G186200 Theobroma cacao HOM05D000070 ORTHO05D005931 1.3e-151 540.0 336 81.5
Duzib151G0220 Durio zibethinus HOM05D000070 ORTHO05D005931 2.3e-151 539.3 336 81.0
Atru.chr3.1506 Acer truncatum HOM05D000070 ORTHO05D005931 2.5e-150 535.8 336 81.0
Actinidia35972 Actinidia chinensis HOM05D000070 ORTHO05D005931 2.5e-150 535.8 336 79.8
MD04G1007800 Malus domestica HOM05D000070 ORTHO05D005931 4.3e-150 535.0 336 81.0
Cfa015158 Carpinus fangiana HOM05D000070 ORTHO05D005931 3.6e-149 531.9 336 80.7
Haze_01497 Corylus avellana HOM05D000067 ORTHO05D005931 3.6e-149 531.9 336 81.2
Manes.04G042700 Manihot esculenta HOM05D000070 ORTHO05D005931 8.1e-149 530.8 337 78.6
QL10p048553 Quercus lobata HOM05D000070 ORTHO05D005931 1.4e-148 530.0 336 79.8
Potri.007G127900 Populus trichocarpa HOM05D000070 ORTHO05D005931 1.8e-148 529.6 336 79.2
TPR.G34234 Trifolium pratense HOM05D000070 ORTHO05D005931 3.1e-148 528.9 336 78.3
Sabra17G0020000 Salix brachista HOM05D000070 ORTHO05D005931 4.0e-148 528.5 336 78.6
Actinidia34607 Actinidia chinensis HOM05D000070 ORTHO05D005931 5.2e-148 528.1 336 79.5
Potri.017G030900 Populus trichocarpa HOM05D000070 ORTHO05D005931 8.9e-148 527.3 336 78.6
Medtr4g067100 Medicago truncatula HOM05D000070 ORTHO05D005931 1.5e-147 526.6 336 78.0
Prupe.1G191800 Prunus persica HOM05D000070 ORTHO05D005931 1.5e-147 526.6 337 79.2
Dinv36378 Davidia involucrata HOM05D000070 ORTHO05D005931 4.4e-147 525.0 336 79.2
Ciclev10018558m.g Citrus clementina HOM05D000070 ORTHO05D005931 5.8e-147 524.6 336 78.9
CiPaw.01G100800 Carya illinoinensis HOM05D000070 ORTHO05D005931 1.7e-146 523.1 336 80.1
FvH4_4g10720 Fragaria vesca HOM05D000070 ORTHO05D005931 2.2e-146 522.7 336 79.8
GSVIVG01010750001 Vitis vinifera HOM05D000070 ORTHO05D005931 2.9e-146 522.3 337 78.9
VMungo1127G1655 Vigna mungo HOM05D000070 ORTHO05D005931 6.4e-146 521.2 336 77.1
Ca_20782_v3 Cicer arietinum L. HOM05D000070 ORTHO05D005931 5.4e-145 518.1 336 75.9
Lj3g0013218 Lotus japonicus HOM05D000070 ORTHO05D005931 5.4e-145 518.1 336 77.4
Psat7g213760 Pisum sativum HOM05D000070 ORTHO05D005931 5.4e-145 518.1 336 76.8
MELO3C011649.2 Cucumis melo HOM05D000070 ORTHO05D005931 7.1e-145 517.7 336 79.2
Glyma.12G052800 Glycine max HOM05D000070 ORTHO05D005931 7.1e-145 517.7 336 76.8
CANSAT54G0506 Cannabis sativa HOM05D000070 ORTHO05D005931 9.2e-145 517.3 336 79.8
Phvul.011G054900 Phaseolus vulgaris HOM05D000070 ORTHO05D005931 9.2e-145 517.3 336 76.8
Glyma.11G128300 Glycine max HOM05D000070 ORTHO05D005931 1.2e-144 516.9 336 77.4
arahy.Tifrunner.gnm1.ann1.B2FMMM Arachis hypogaea HOM05D000070 ORTHO05D005931 1.6e-144 516.5 336 76.2
Ah.13g072900 Amaranthus hybridus HOM05D000070 ORTHO05D005931 2.1e-144 516.2 335 77.6
AUR62002296 Chenopodium quinoa HOM05D000070 ORTHO05D005931 2.7e-144 515.8 335 78.2
TAR362G0755 Trochodendron aralioides HOM05D000070 ORTHO05D005931 2.7e-144 515.8 336 77.1
AUR62015394 Chenopodium quinoa HOM05D000070 ORTHO05D005931 3.5e-144 515.4 335 77.9
CsaV3_6G003880 Cucumis sativus L. HOM05D000070 ORTHO05D005931 6.0e-144 514.6 336 78.6
DCAR_016935 Daucus carota HOM05D000070 ORTHO05D005931 1.0e-143 513.8 339 77.0
Gohir.A02G015301 Gossypium hirsutum HOM05D000070 ORTHO05D005931 1.3e-143 513.5 337 77.4
Gorai.005G020700 Gossypium raimondii HOM05D000070 ORTHO05D005931 1.3e-143 513.5 336 77.4
Gohir.D02G016900 Gossypium hirsutum HOM05D000070 ORTHO05D005931 2.3e-143 512.7 336 77.4
EL10Ac3g05926 Beta vulgaris HOM05D000070 ORTHO05D005931 3.9e-143 511.9 336 78.3
HanXRQChr03g0091981 Helianthus annuus HOM05D000070 ORTHO05D005931 5.1e-143 511.5 337 76.0
TWI15G0144 Tripterygium wilfordii HOM05D000070 ORTHO05D005931 8.7e-143 510.8 337 78.9
Sabra07G0104200 Salix brachista HOM05D000070 ORTHO05D005931 1.5e-142 510.0 344 75.9
Cc10_g15760 Coffea canephora HOM05D000070 ORTHO05D005931 1.9e-142 509.6 336 77.4
Lalb_Chr01g0003191 Lupinus albus HOM05D000070 ORTHO05D005931 2.5e-142 509.2 336 76.2
CSS0028544 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D005931 5.6e-142 508.1 335 76.1
Lj6C54T5 Lonicera japonica HOM05D000070 ORTHO05D005931 7.3e-142 507.7 337 76.9
MBI11_g13788_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D005931 4.0e-140 501.9 336 73.8
Rhsim09G0028300 Rhododendron simsii HOM05D000070 ORTHO05D005931 6.9e-140 501.1 350 73.7
CAN.G475.45 Capsicum annuum HOM05D000070 ORTHO05D005931 9.0e-140 500.7 336 76.2
Sc25g0003000 Simmondsia chinensis HOM05D000070 ORTHO05D005931 9.0e-140 500.7 336 74.4
SGA_v2.0_scaffold118G32488 Striga asiatica HOM05D000070 ORTHO05D005931 2.0e-139 499.6 336 76.5
Migut.C01257 Erythranthe guttata HOM05D000070 ORTHO05D005931 4.4e-139 498.4 335 74.6
Sed0022342 Sechium edule HOM05D000070 ORTHO05D005931 4.4e-139 498.4 336 76.5
Nn1g09748 Nelumbo nucifera HOM05D000070 ORTHO05D005931 2.2e-138 496.1 336 74.1
MSTRG.1524 Avicennia marina HOM05D000070 ORTHO05D005931 6.4e-138 494.6 336 75.0
ECA240G1160 Erigeron canadensis HOM05D000070 ORTHO05D005931 1.1e-137 493.8 337 73.3
Aqoxy2G04141 Aquilegia oxysepala HOM05D000070 ORTHO05D005931 3.2e-137 492.3 336 72.9
Peaxi162Scf00281g00017 Petunia axillaris HOM05D000070 ORTHO05D005931 3.2e-137 492.3 337 74.8
MSTRG.22453 Avicennia marina HOM05D000070 ORTHO05D005931 1.6e-136 490.0 336 73.8
SalBow7G2668 Salvia bowleyana HOM05D000070 ORTHO05D005931 1.0e-135 487.3 335 75.2
ATR0743G258 Amborella trichopoda HOM05D000070 ORTHO05D005931 1.3e-135 486.9 336 72.6
BraA09t42057Z Brassica rapa HOM05D000070 ORTHO05D005931 2.3e-135 486.1 335 74.6
BolC8t52681H Brassica oleracea HOM05D000070 ORTHO05D005931 6.6e-135 484.6 335 74.3
A09p67240 Brassica napus HOM05D000070 ORTHO05D005931 8.7e-135 484.2 335 74.6
BcaC07g42100 Brassica carinata HOM05D000070 ORTHO05D005931 1.1e-134 483.8 335 74.3
Sp1g04750 Schrenkiella parvula HOM05D000070 ORTHO05D005931 1.1e-134 483.8 335 74.0
C08p51530 Brassica napus HOM05D000070 ORTHO05D005931 2.5e-134 482.6 335 74.0
Carub.0001s0528 Capsella rubella HOM05D000070 ORTHO05D005931 5.6e-134 481.5 335 73.7
AL1G15870 Arabidopsis lyrata HOM05D000070 ORTHO05D005931 1.3e-133 480.3 335 73.4
PSO210G2057 Papaver somniferum HOM05D000070 ORTHO05D005931 1.6e-133 479.9 336 71.1
PSO832G4402 Papaver somniferum HOM05D000070 ORTHO05D005931 1.6e-133 479.9 336 71.1
Solyc04g076180.4 Solanum lycopersicum HOM05D000070 ORTHO05D005931 1.8e-132 476.5 336 73.5
Sopen04g030020 Solanum pennellii HOM05D000070 ORTHO05D005931 1.8e-132 476.5 336 73.5
Lsat_1_v5_gn_3_121920 Lactuca sativa HOM05D000070 ORTHO05D005931 9.0e-132 474.2 337 70.6
CDE07G0988 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 1.2e-131 473.8 336 70.2
Nitab4.5_0003300g0060 Nicotiana tabacum HOM05D000070 ORTHO05D005931 2.0e-131 473.0 361 69.3
AT1G05910 Arabidopsis thaliana HOM05D000070 ORTHO05D005931 4.5e-131 471.9 336 72.9
Nitab4.5_0000131g0440 Nicotiana tabacum HOM05D000070 ORTHO05D005931 7.6e-131 471.1 336 72.9
BraA10t42726Z Brassica rapa HOM05D000070 ORTHO05D005931 9.9e-131 470.7 335 72.8
Aa31LG1G8340 Aethionema arabicum HOM05D000070 ORTHO05D005931 1.1e-129 467.2 335 71.0
CARHR005470 Cardamine hirsuta HOM05D000070 ORTHO05D005931 1.1e-129 467.2 335 72.5
A10p04610 Brassica napus HOM05D000070 ORTHO05D005931 1.4e-129 466.8 335 72.5
Thhalv10006586m.g Eutrema salsugineum HOM05D000070 ORTHO05D005931 3.2e-129 465.7 335 71.9
THA.LOC104826206 Tarenaya hassleriana HOM05D000070 ORTHO05D005931 4.2e-129 465.3 337 71.2
C05p04270 Brassica napus HOM05D000070 ORTHO05D005931 2.1e-128 463.0 335 71.6
BolC5t29202H Brassica oleracea HOM05D000070 ORTHO05D005931 2.1e-128 463.0 335 71.6
RcHm_v2.0_Chr3g0496841 Rosa chinensis HOM05D000070 ORTHO05D005931 1.3e-127 460.3 337 73.3
Zm00001eb318390 Zea mays HOM05D000070 ORTHO05D005931 1.3e-127 460.3 336 69.0
QL01p053894 Quercus lobata HOM05D000070 ORTHO05D005931 1.8e-127 459.9 339 71.7
arahy.Tifrunner.gnm1.ann1.KNUI9Y Arachis hypogaea HOM05D000070 ORTHO05D005931 3.9e-127 458.8 336 69.9
QL01p052795 Quercus lobata HOM05D000070 ORTHO05D005931 3.9e-127 458.8 339 71.7
Os09g0515100 Oryza sativa ssp. japonica HOM05D000070 ORTHO05D005931 7.4e-126 454.5 336 68.5
FAN17G2943 Fragaria x ananassa HOM05D003140 ORTHO05D005931 1.3e-125 453.8 336 72.3
FAN07G1072 Fragaria x ananassa HOM05D000961 ORTHO05D005931 5.3e-124 448.4 335 71.6
Sed0006140 Sechium edule HOM05D000070 ORTHO05D005931 5.3e-124 448.4 336 70.2
FAN12G3303 Fragaria x ananassa HOM05D003140 ORTHO05D005931 5.8e-123 444.9 335 71.3
Gorai.005G020500 Gossypium raimondii HOM05D000070 ORTHO05D005931 5.6e-118 428.3 344 67.4
arahy.Tifrunner.gnm1.ann1.4K4GN8 Arachis hypogaea HOM05D000070 ORTHO05D005931 1.0e-114 417.5 352 64.2
HPP92_009007 Vanilla planifolia HOM05D000070 ORTHO05D005931 4.2e-113 412.1 358 61.2
ClCG08G004540 Citrullus lanatus HOM05D000070 ORTHO05D005931 2.8e-109 399.4 274 76.6
Pp3c20_16710 Physcomitrium patens HOM05D000070 ORTHO05D005931 2.9e-106 389.4 351 56.4
Mapoly0028s0109 Marchantia polymorpha HOM05D000070 ORTHO05D005931 5.0e-106 388.7 351 57.3
Pp3c23_2940 Physcomitrium patens HOM05D000070 ORTHO05D005931 5.0e-106 388.7 349 56.4
SMO118G0259 Selaginella moellendorffii HOM05D000070 ORTHO05D005931 8.5e-106 387.9 342 57.9
QL01p053252 Quercus lobata HOM05D000070 ORTHO05D005931 4.2e-105 385.6 339 64.0
BcaC05g24320 Brassica carinata HOM05D000070 ORTHO05D005931 2.1e-104 383.3 335 63.9
Lju1220A2T12 Lonicera japonica HOM05D000070 ORTHO05D005931 7.9e-104 381.3 384 56.0
AagrBONN_evm.TU.Sc2ySwM_228.2500 Anthoceros agrestis HOM05D000070 ORTHO05D005931 2.9e-98 362.8 347 54.5
Lju225A4T33 Lonicera japonica HOM05D000070 ORTHO05D005931 1.9e-97 360.1 351 57.0
CBR_g32464 Chara braunii HOM05D000070 ORTHO05D005931 1.5e-89 334.0 361 51.8
QL01p053543 Quercus lobata HOM05D000070 ORTHO05D005931 2.1e-88 330.1 337 57.0
HPP92_008996 Vanilla planifolia HOM05D000070 ORTHO05D005931 7.0e-84 315.1 333 52.9
unitig_0.g2134 Utricularia gibba HOM05D000070 ORTHO05D005931 9.1e-84 314.7 241 68.5
Hund12009 Selenicereus undatus HOM05D000070 ORTHO05D005931 6.8e-79 298.5 192 78.1
Lju114A3T41 Lonicera japonica HOM05D000070 ORTHO05D005931 2.4e-76 290.0 311 52.4
vmacro00627 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 1.6e-64 250.8 141 87.2
Lsat_1_v5_gn_0_32360 Lactuca sativa HOM05D000070 ORTHO05D005931 7.5e-62 241.9 172 70.9
Nn1g09696 Nelumbo nucifera HOM05D000070 ORTHO05D005931 9.2e-60 235.0 274 50.4
FAN26G3153 Fragaria x ananassa HOM05D000070 ORTHO05D005931 4.4e-54 216.1 225 59.1
FAN19G2817 Fragaria x ananassa HOM05D000070 ORTHO05D005931 9.8e-54 214.9 250 55.6
FvH4_1g28290 Fragaria vesca HOM05D000070 ORTHO05D005931 1.7e-53 214.2 250 55.2
PRCOL_00001556 Prasinoderma coloniale HOM05D000070 ORTHO05D005931 2.2e-53 213.8 382 36.4
FAN23G0821 Fragaria x ananassa HOM05D000070 ORTHO05D005931 8.3e-53 211.8 225 58.2
vmacro22679 Vaccinium macrocarpon HOM05D000070 ORTHO05D005931 1.3e-50 204.5 131 77.1
CDE04G2237 Ceratophyllum demersum HOM05D000070 ORTHO05D005931 1.1e-49 201.4 144 64.6
MCO05G270 Micromonas commoda HOM05D000070 ORTHO05D005931 5.8e-46 189.1 303 39.6
Cre01.g038151 Chlamydomonas reinhardtii HOM05D000070 ORTHO05D005931 1.2e-43 181.4 298 38.3
Psat7g062600 Pisum sativum HOM05D007669 ORTHO05D009624 8.6e-42 175.3 96 86.5
ECA246G2834 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-41 174.9 121 68.6
Hund12010 Selenicereus undatus HOM05D000070 ORTHO05D005931 2.0e-30 137.5 71 88.7
unitig_0.g2133 Utricularia gibba HOM05D000070 ORTHO05D005931 2.9e-29 133.7 73 80.8
arahy.Tifrunner.gnm1.ann1.6YW6LE Arachis hypogaea HOM05D000229 ORTHO05D000182 1.3e-26 124.8 75 80.0
arahy.Tifrunner.gnm1.ann1.APT0N2 Arachis hypogaea HOM05D000070 ORTHO05D087228 4.8e-24 116.3 86 69.8
arahy.Tifrunner.gnm1.ann1.ER7IEF Arachis hypogaea HOM05D002305 ORTHO05D086641 5.3e-23 112.8 94 66.0
arahy.Tifrunner.gnm1.ann1.7TG989 Arachis hypogaea HOM05D000070 ORTHO05D016631 1.3e-21 108.2 76 69.7
arahy.Tifrunner.gnm1.ann1.KB814C Arachis hypogaea HOM05D000070 ORTHO05D016631 7.1e-20 102.4 72 69.4
arahy.Tifrunner.gnm1.ann1.YI82QK Arachis hypogaea HOM05D000070 ORTHO05D016631 7.1e-20 102.4 72 69.4
arahy.Tifrunner.gnm1.ann1.5J8MXK Arachis hypogaea HOM05D000070 ORTHO05D016631 4.6e-19 99.8 73 67.1
Lj1A574G25 Lonicera japonica HOM05D000070 ORTHO05D235762 1.0e-18 98.6 86 54.7
arahy.Tifrunner.gnm1.ann1.BHQ92U Arachis hypogaea HOM05D000001 ORTHO05D016631 1.3e-18 98.2 66 71.2
Psat5g179240 Pisum sativum HOM05D002906 ORTHO05D003211 7.3e-17 92.4 129 47.3
Psat5g179120 Pisum sativum HOM05D002906 ORTHO05D003211 4.5e-14 83.2 74 58.1
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 2.9e-13 80.5 46 84.8
SGA_v2.0_scaffold199G41170 Striga asiatica HOM05D000070 ORTHO05D003267 1.9e-12 77.8 106 46.2
Potri.017G031400 Populus trichocarpa HOM05D000070 ORTHO05D005931 2.1e-11 74.3 41 85.4
arahy.Tifrunner.gnm1.ann1.H147SP Arachis hypogaea HOM05D000070 ORTHO05D016631 8.1e-08 62.4 33 78.8
Lju225A7T71 Lonicera japonica HOM05D000070 ORTHO05D005931 1.4e-07 61.6 66 59.1
Psat5g179200 Pisum sativum HOM05D002906 ORTHO05D003211 1.2e-06 58.5 62 51.6
Carub.0002s2328 Capsella rubella HOM05D001078 ORTHO05D000927 2.0e-06 57.8 65 43.1
AL1G33640 Arabidopsis lyrata HOM05D001078 ORTHO05D000927 3.4e-06 57.0 65 44.6
Thhalv10018318m.g Eutrema salsugineum HOM05D001078 ORTHO05D000927 4.5e-06 56.6 65 41.5
BcaC08g47257 Brassica carinata HOM05D001078 ORTHO05D000927 5.8e-06 56.2 65 41.5
AT1G20670 Arabidopsis thaliana HOM05D001078 ORTHO05D000927 7.6e-06 55.8 65 44.6
BcaC06g34828 Brassica carinata HOM05D001078 ORTHO05D000927 7.6e-06 55.8 95 36.8
C07p22900 Brassica napus HOM05D001078 ORTHO05D000927 7.6e-06 55.8 95 36.8
BolC7t42829H Brassica oleracea HOM05D001078 ORTHO05D000927 7.6e-06 55.8 95 36.8
arahy.Tifrunner.gnm1.ann1.QR4D9A Arachis hypogaea HOM05D002305 ORTHO05D083864 1.0e-05 55.5 49 61.2


User provided reference genes

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