Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A00239 Eucalyptus grandis HOM05D006408 ORTHO05D008038 1.9e-176 622.5 338 100.0
PGR083G0137 Punica granatum HOM05D006408 ORTHO05D008038 1.0e-132 477.2 321 75.7
Cfa018129 Carpinus fangiana HOM05D006408 ORTHO05D008038 5.5e-131 471.5 314 75.5
CARHR021960 Cardamine hirsuta HOM05D006408 ORTHO05D008038 1.0e-129 467.2 334 72.8
Cpa.g.sc26.317 Carica papaya HOM05D006408 ORTHO05D008038 4.0e-129 465.3 312 75.3
Sp1g19130 Schrenkiella parvula HOM05D006408 ORTHO05D008038 1.2e-128 463.8 313 75.4
CiPaw.16G022700 Carya illinoinensis HOM05D006408 ORTHO05D008038 1.3e-127 460.3 298 77.2
MELO3C010512.2 Cucumis melo HOM05D006408 ORTHO05D008038 1.1e-126 457.2 321 70.4
CsaV3_4G028270 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.8e-126 456.4 320 71.2
CANSAT25G1301 Cannabis sativa HOM05D006408 ORTHO05D008038 7.0e-126 454.5 324 71.0
TAR628G0457 Trochodendron aralioides HOM05D006408 ORTHO05D008038 1.2e-125 453.8 326 70.9
Hma1.2p1_1121F.1_g259280 Hydrangea macrophylla HOM05D006408 ORTHO05D008038 1.6e-125 453.4 319 76.2
Prupe.1G489500 Prunus persica HOM05D006408 ORTHO05D008038 1.6e-125 453.4 324 71.0
THA.LOC104814021 Tarenaya hassleriana HOM05D006408 ORTHO05D008038 4.5e-125 451.8 281 78.6
ClCG11G015980 Citrullus lanatus HOM05D006408 ORTHO05D008038 5.9e-125 451.4 331 68.6
Gorai.005G087700 Gossypium raimondii HOM05D006408 ORTHO05D008038 1.0e-124 450.7 305 73.8
Manes.02G168400 Manihot esculenta HOM05D006408 ORTHO05D008038 1.0e-124 450.7 319 71.5
Nitab4.5_0001168g0170 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.7e-124 449.9 287 78.7
FAN20G2488 Fragaria x ananassa HOM05D006408 ORTHO05D008038 1.1e-123 447.2 338 72.8
MD08G1159400 Malus domestica HOM05D006408 ORTHO05D008038 1.9e-123 446.4 326 70.2
RcHm_v2.0_Chr6g0296711 Rosa chinensis HOM05D006408 ORTHO05D008038 1.9e-123 446.4 319 71.2
Thecc.08G133100 Theobroma cacao HOM05D006408 ORTHO05D008038 2.5e-123 446.0 306 74.5
AL1G34740 Arabidopsis lyrata HOM05D006408 ORTHO05D008038 4.3e-123 445.3 334 69.8
Aqoxy5G02393 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 5.6e-123 444.9 287 77.0
A06p17690 Brassica napus HOM05D006408 ORTHO05D008038 7.3e-123 444.5 339 67.8
BraA06t24861Z Brassica rapa HOM05D006408 ORTHO05D008038 7.3e-123 444.5 339 67.8
FAN27G1901 Fragaria x ananassa HOM05D006408 ORTHO05D008038 9.5e-123 444.1 338 73.7
Actinidia15213 Actinidia chinensis HOM05D006408 ORTHO05D008038 1.2e-122 443.7 318 75.2
C05p20590 Brassica napus HOM05D006408 ORTHO05D008038 1.2e-122 443.7 339 68.4
BolC5t30757H Brassica oleracea HOM05D006408 ORTHO05D008038 1.2e-122 443.7 339 68.4
MBI03_g48069_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 2.8e-122 442.6 321 69.2
Aa31LG7G5580 Aethionema arabicum HOM05D006408 ORTHO05D008038 3.6e-122 442.2 356 67.1
Atru.chr13.1568 Acer truncatum HOM05D006408 ORTHO05D008038 4.7e-122 441.8 324 69.1
AT1G21600 Arabidopsis thaliana HOM05D006408 ORTHO05D008038 6.1e-122 441.4 333 71.8
Ca_16607_v3 Cicer arietinum L. HOM05D006408 ORTHO05D008038 1.0e-121 440.7 310 71.9
PSO017G3385 Papaver somniferum HOM05D006408 ORTHO05D008038 3.0e-121 439.1 305 72.5
CAN.G288.5 Capsicum annuum HOM05D006408 ORTHO05D008038 8.9e-121 437.6 317 70.3
FAN24G2159 Fragaria x ananassa HOM05D006408 ORTHO05D008038 8.9e-121 437.6 338 72.8
Ciclev10001886m.g Citrus clementina HOM05D006408 ORTHO05D008038 1.5e-120 436.8 322 74.2
Peaxi162Scf00066g00222 Petunia axillaris HOM05D006408 ORTHO05D008038 1.5e-120 436.8 340 69.7
CSS0036755 Camellia sinensis var. sinensis HOM05D006408 ORTHO05D008038 2.0e-120 436.4 314 77.1
Nn1g08961 Nelumbo nucifera HOM05D006408 ORTHO05D008038 2.6e-120 436.0 326 68.1
BcaC05g26077 Brassica carinata HOM05D006408 ORTHO05D008038 3.4e-120 435.6 339 72.0
PSO170G2303 Papaver somniferum HOM05D006408 ORTHO05D008038 4.4e-120 435.3 282 76.2
Sopen04g025710 Solanum pennellii HOM05D006408 ORTHO05D008038 5.7e-120 434.9 318 69.8
EL10Ac1g01346 Beta vulgaris HOM05D006408 ORTHO05D008038 1.3e-119 433.7 327 69.4
PGSC0003DMG400028061 Solanum tuberosum HOM05D006408 ORTHO05D008038 1.3e-119 433.7 329 71.4
DCAR_003587 Daucus carota HOM05D006408 ORTHO05D008038 2.2e-119 433.0 257 80.2
Solyc04g057870.3 Solanum lycopersicum HOM05D006408 ORTHO05D008038 2.9e-119 432.6 318 69.5
Phvul.009G129900 Phaseolus vulgaris HOM05D006408 ORTHO05D008038 2.4e-118 429.5 331 66.8
FAN15G0171 Fragaria x ananassa HOM05D006408 ORTHO05D008038 4.1e-118 428.7 255 81.2
Glyma.04G087000 Glycine max HOM05D006408 ORTHO05D008038 4.1e-118 428.7 296 70.6
Psat5g084760 Pisum sativum HOM05D006408 ORTHO05D008038 4.1e-118 428.7 314 68.8
Potri.002G078900 Populus trichocarpa HOM05D006408 ORTHO05D008038 4.1e-118 428.7 257 79.4
Sed0021255 Sechium edule HOM05D006408 ORTHO05D008038 7.0e-118 427.9 332 69.3
CDE06G0572 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 1.6e-117 426.8 308 69.8
Carub.0001s2103 Capsella rubella HOM05D006408 ORTHO05D008038 2.0e-117 426.4 225 88.9
Medtr3g088605 Medicago truncatula HOM05D006408 ORTHO05D008038 2.0e-117 426.4 317 67.5
Glyma.06G117500 Glycine max HOM05D006408 ORTHO05D008038 3.5e-117 425.6 308 68.8
Oeu047179.2 Olea europaea HOM05D006408 ORTHO05D008038 1.0e-116 424.1 228 87.3
VMungo1309G0712 Vigna mungo HOM05D006408 ORTHO05D008038 1.3e-116 423.7 289 70.6
BcaB07g32155 Brassica carinata HOM05D006408 ORTHO05D008038 2.3e-116 422.9 225 88.4
MSTRG.22398 Avicennia marina HOM05D006408 ORTHO05D008038 3.0e-116 422.5 229 87.3
unitig_52.g17545 Utricularia gibba HOM05D006408 ORTHO05D008038 3.0e-116 422.5 289 75.8
Gohir.D02G078200 Gossypium hirsutum HOM05D006408 ORTHO05D008038 6.6e-116 421.4 222 88.7
GSVIVG01008807001 Vitis vinifera HOM05D006408 ORTHO05D008038 8.6e-116 421.0 222 89.6
Cc10_g13760 Coffea canephora HOM05D006408 ORTHO05D008038 1.1e-115 420.6 338 68.6
Lj4A682G50 Lonicera japonica HOM05D006408 ORTHO05D008038 2.5e-115 419.5 251 79.3
Migut.N03260 Erythranthe guttata HOM05D006408 ORTHO05D008038 3.3e-115 419.1 228 86.4
ATR0568G086 Amborella trichopoda HOM05D006408 ORTHO05D008038 6.2e-114 414.8 286 71.3
Lalb_Chr08g0241101 Lupinus albus HOM05D006408 ORTHO05D008038 6.2e-114 414.8 332 63.3
TPR.G28811 Trifolium pratense HOM05D006408 ORTHO05D008038 8.0e-114 414.5 321 66.4
arahy.Tifrunner.gnm1.ann1.227FW7 Arachis hypogaea HOM05D006408 ORTHO05D008038 1.2e-112 410.6 318 67.0
HanXRQChr02g0045521 Helianthus annuus HOM05D006408 ORTHO05D008038 1.2e-112 410.6 257 77.0
arahy.Tifrunner.gnm1.ann1.8X384Y Arachis hypogaea HOM05D006408 ORTHO05D008038 1.5e-112 410.2 318 66.7
FvH4_2g27850 Fragaria vesca HOM05D006408 ORTHO05D008038 4.4e-112 408.7 227 85.9
CDE04G0676 Ceratophyllum demersum HOM05D006408 ORTHO05D008038 9.8e-112 407.5 296 69.3
QL09p032485 Quercus lobata HOM05D006408 ORTHO05D008038 1.7e-111 406.8 223 87.0
Lj1g0002290 Lotus japonicus HOM05D006408 ORTHO05D008038 1.1e-110 404.1 219 86.3
HPP92_009911 Vanilla planifolia HOM05D006408 ORTHO05D008038 2.3e-108 396.4 257 73.9
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 8.6e-108 394.4 255 75.3
Lsat_1_v5_gn_1_7780 Lactuca sativa HOM05D006408 ORTHO05D008038 4.3e-107 392.1 248 76.2
BolC8t49731H Brassica oleracea HOM05D006408 ORTHO05D008038 2.1e-106 389.8 343 62.1
A08p28910 Brassica napus HOM05D006408 ORTHO05D008038 3.7e-103 379.0 206 86.9
Ah.10g032560 Amaranthus hybridus HOM05D006408 ORTHO05D008038 4.3e-99 365.5 257 70.4
Gohir.A02G071000 Gossypium hirsutum HOM05D006408 ORTHO05D008038 2.1e-98 363.2 222 79.3
Hund17341 Selenicereus undatus HOM05D006408 ORTHO05D008038 4.9e-95 352.1 217 77.4
Os11g0110100 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.3e-92 343.2 234 68.4
Os12g0110400 Oryza sativa ssp. japonica HOM05D006408 ORTHO05D008038 2.3e-92 343.2 235 67.2
Zm00001eb195160 Zea mays HOM05D006408 ORTHO05D008038 3.9e-92 342.4 257 62.6
Thhalv10007813m.g Eutrema salsugineum HOM05D006408 ORTHO05D008038 1.6e-90 337.0 226 75.2
SGA_v2.0_scaffold25G11139 Striga asiatica HOM05D006408 ORTHO05D008038 2.1e-90 336.7 292 60.3
Nitab4.5_0003978g0010 Nicotiana tabacum HOM05D006408 ORTHO05D008038 1.1e-89 334.3 219 77.6
Rhsim06G0091400 Rhododendron simsii HOM05D006408 ORTHO05D008038 6.4e-87 325.1 496 43.8
C08p20930 Brassica napus HOM05D006408 ORTHO05D008038 1.9e-83 313.5 257 64.6
AUR62013426 Chenopodium quinoa HOM05D006408 ORTHO05D008038 1.9e-83 313.5 327 54.1
AUR62007717 Chenopodium quinoa HOM05D006408 ORTHO05D008038 5.6e-83 312.0 327 54.1
SEGI_15088 Sequoiadendron giganteum HOM05D006408 ORTHO05D008038 9.9e-80 301.2 233 60.1
Sc26g0002930 Simmondsia chinensis HOM05D006408 ORTHO05D008038 1.9e-78 297.0 254 64.6
Duzib093G1884 Durio zibethinus HOM05D006408 ORTHO05D008038 1.3e-74 284.3 224 65.6
vmacro20822 Vaccinium macrocarpon HOM05D006408 ORTHO05D008038 1.3e-74 284.3 167 82.0
Mapoly0008s0219 Marchantia polymorpha HOM05D006408 ORTHO05D008038 2.4e-70 270.0 327 45.3
BraA08t34821Z Brassica rapa HOM05D006408 ORTHO05D008038 3.9e-68 262.7 257 55.6
Pp3c1_1000 Physcomitrium patens HOM05D006408 ORTHO05D008038 4.3e-67 259.2 255 51.8
CsaV3_5G019980 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.4e-65 253.4 215 59.5
CsaV3_UNG224650 Cucumis sativus L. HOM05D006408 ORTHO05D008038 7.1e-62 241.9 208 60.6
COL.COLO4_06961 Corchorus olitorius HOM05D006408 ORTHO05D008038 3.5e-61 239.6 207 66.2
SalBow2G2951 Salvia bowleyana HOM05D006408 ORTHO05D008038 4.3e-59 232.6 119 89.1
SMO146G0302 Selaginella moellendorffii HOM05D006408 ORTHO05D008038 4.3e-59 232.6 205 54.1
MBI03_g28486_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 5.9e-56 222.2 250 53.2
Dinv14691 Davidia involucrata HOM05D006408 ORTHO05D008038 3.4e-48 196.4 178 61.8
MBI03_g39652_MAGBIO Magnolia biondii HOM05D006408 ORTHO05D008038 1.3e-47 194.5 161 64.0
Sabra02G0061800 Salix brachista HOM05D006408 ORTHO05D008038 2.6e-40 170.2 97 80.4
Aqoxy219s001 Aquilegia oxysepala HOM05D006408 ORTHO05D008038 4.2e-38 162.9 109 75.2
CBR_g40143 Chara braunii HOM05D006408 ORTHO05D008038 5.0e-31 139.4 175 38.9
CsaV3_5G018920 Cucumis sativus L. HOM05D006408 ORTHO05D008038 1.5e-30 137.9 155 49.0
BolC5t30909H Brassica oleracea HOM05D006408 ORTHO05D008038 2.0e-27 127.5 62 91.9
Actinidia21278 Actinidia chinensis HOM05D006408 ORTHO05D008038 6.5e-23 112.5 104 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4901 Anthoceros agrestis HOM05D006408 ORTHO05D008038 4.0e-20 103.2 77 64.9
MBI14_g28586_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 3.3e-14 83.6 43 90.7
CsaV3_UNG111870 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.7e-08 63.9 68 51.5
CsaV3_UNG115880 Cucumis sativus L. HOM05D006408 ORTHO05D008038 2.7e-08 63.9 68 51.5
Actinidia21279 Actinidia chinensis HOM05D006408 ORTHO05D008038 8.6e-07 58.9 159 34.6


User provided reference genes

Program Settings