Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 5.4e-176 620.9 323 100.0
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.9e-141 506.1 342 75.1
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 2.1e-140 502.7 325 76.0
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.8e-139 499.6 346 73.4
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 6.0e-135 484.6 332 73.5
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 9.7e-125 450.7 281 76.9
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 5.3e-123 444.9 289 73.7
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 2.9e-121 439.1 274 76.3
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 3.8e-121 438.7 324 67.6
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 6.5e-121 438.0 325 66.2
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 6.5e-121 438.0 325 66.2
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 1.6e-119 433.3 268 77.2
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 6.1e-119 431.4 276 73.6
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.3e-118 429.5 277 75.1
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 3.9e-118 428.7 329 65.0
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.1e-117 427.2 268 74.6
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.5e-117 426.8 275 73.5
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 3.3e-117 425.6 331 62.2
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 7.4e-117 424.5 295 69.5
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.3e-116 423.7 265 74.7
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 1.7e-116 423.3 329 64.7
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 1.7e-116 423.3 329 64.7
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 3.7e-116 422.2 327 64.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.8e-116 421.8 268 73.9
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 8.2e-116 421.0 294 71.8
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.1e-115 420.6 268 73.5
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.1e-115 420.6 279 72.4
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.4e-115 420.2 308 67.2
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 2.4e-115 419.5 290 70.3
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.1e-115 418.7 327 64.2
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 6.9e-115 417.9 278 71.2
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.0e-114 416.4 278 72.3
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 3.4e-114 415.6 278 71.2
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 4.5e-114 415.2 278 71.2
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 7.7e-114 414.5 278 71.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.0e-113 414.1 351 59.5
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.0e-113 414.1 273 72.2
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 1.3e-113 413.7 338 60.7
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.7e-113 413.3 271 71.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.2e-113 412.9 268 73.5
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 2.9e-113 412.5 274 73.4
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.9e-113 412.5 274 72.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 2.9e-113 412.5 291 69.8
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 6.5e-113 411.4 268 72.8
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.1e-112 410.6 278 70.5
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 4.2e-112 408.7 271 71.6
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 7.2e-112 407.9 287 69.3
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.2e-111 407.1 326 63.5
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 3.6e-111 405.6 271 72.0
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 6.1e-111 404.8 286 68.9
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 7.9e-111 404.4 339 60.2
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.3e-110 402.9 271 70.8
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 3.9e-110 402.1 268 70.5
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 1.5e-109 400.2 272 70.6
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 2.0e-109 399.8 269 71.4
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 7.4e-109 397.9 274 69.3
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 9.7e-109 397.5 339 60.5
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 9.7e-109 397.5 329 62.0
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.8e-108 396.0 276 69.9
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 2.8e-108 396.0 272 69.5
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 6.3e-108 394.8 335 61.2
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 6.3e-108 394.8 307 63.8
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.4e-107 393.7 329 61.7
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 5.3e-107 391.7 320 62.8
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 7.0e-107 391.3 330 61.5
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 7.0e-107 391.3 274 70.1
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 9.1e-107 391.0 274 69.3
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 9.1e-107 391.0 274 70.1
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 1.6e-106 390.2 304 63.8
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 2.0e-106 389.8 318 62.9
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 2.6e-106 389.4 274 69.3
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 2.6e-106 389.4 274 69.3
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 2.6e-106 389.4 274 69.3
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.6e-106 389.4 245 74.3
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.6e-106 389.4 264 70.8
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.9e-106 388.3 275 67.6
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.3e-105 387.1 332 59.9
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.8e-105 385.6 333 59.5
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.5e-104 383.6 332 60.2
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 1.5e-104 383.6 277 67.9
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.9e-104 383.3 254 71.7
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 5.5e-104 381.7 251 72.5
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 9.4e-104 380.9 266 71.1
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 1.6e-103 380.2 256 71.1
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.8e-102 376.7 266 66.9
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.8e-102 376.7 266 66.9
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.8e-102 376.7 266 66.9
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 6.7e-102 374.8 246 72.4
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 8.8e-102 374.4 241 72.6
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.6e-101 372.9 286 63.3
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.3e-100 370.5 315 60.0
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 2.2e-100 369.8 305 61.0
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 3.7e-100 369.0 252 71.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.1e-99 365.9 268 65.3
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.5e-96 357.1 283 61.5
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.5e-96 357.1 267 60.7
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 2.5e-96 356.3 255 66.7
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 9.4e-96 354.4 258 66.7
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 1.2e-95 354.0 288 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 4.7e-95 352.1 275 58.9
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 5.7e-93 345.1 213 76.1
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 9.8e-93 344.4 217 75.6
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 3.7e-92 342.4 210 77.6
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 2.9e-89 332.8 232 68.5
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 1.2e-87 327.4 229 69.0
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.2e-85 320.9 325 53.2
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 2.0e-85 320.1 223 69.1
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.2e-84 316.6 254 57.9
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 3.7e-84 315.8 223 67.7
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.1e-80 304.3 240 58.8
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 2.1e-79 300.1 232 59.9
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 6.1e-79 298.5 240 58.8
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 6.0e-74 282.0 327 47.7
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.1e-72 277.7 226 57.5
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 4.7e-71 272.3 219 63.9
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 4.9e-68 262.3 168 75.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 2.5e-64 250.0 166 69.9
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 8.1e-63 245.0 159 71.7
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 8.9e-62 241.5 294 44.9
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 6.0e-58 228.8 216 50.9
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.1e-54 218.0 227 53.7
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 7.8e-50 201.8 184 52.2
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 9.6e-48 194.9 109 82.6
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.4e-46 191.0 221 44.8
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 3.1e-46 189.9 170 56.5
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 2.5e-40 170.2 99 75.8
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.5e-37 159.5 235 39.6
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.2e-35 152.9 188 46.3
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 2.7e-34 150.2 97 77.3
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 3.5e-34 149.8 77 87.0
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 1.0e-33 148.3 98 74.5
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.0e-33 146.7 219 38.4
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-32 144.4 188 44.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 7.4e-32 142.1 100 66.0
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 8.1e-31 138.7 216 36.6
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 1.5e-29 134.4 78 75.6
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.2e-28 130.6 214 34.6
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-28 130.2 179 40.8
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.4e-28 128.6 184 38.6
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-27 128.3 181 38.7
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 3.2e-27 126.7 83 67.5
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 6.9e-22 109.0 160 41.2
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.9e-20 103.6 181 33.7
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-20 103.2 139 40.3
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 2.1e-18 97.4 141 41.1
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 2.5e-16 90.5 175 33.1
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.8e-15 86.3 184 30.4
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 2.2e-12 77.4 183 31.7
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 2.1e-10 70.9 57 57.9
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.6e-10 70.1 34 91.2
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.7e-07 60.1 49 57.1
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 4.8e-07 59.7 68 48.5


User provided reference genes

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