Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 2656.3 1325 100.0
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 2253.4 1331 85.1
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 2224.1 1331 84.2
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1932.1 1333 73.1
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1723.0 1339 65.6
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1699.5 1336 63.1
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1698.3 1338 64.3
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1659.0 1399 60.5
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1658.7 1333 62.0
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1655.2 1334 62.3
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1644.4 1332 62.5
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1626.3 1322 61.5
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1620.5 1287 62.5
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1616.3 1337 61.3
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1610.9 1330 61.1
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 1608.6 1342 62.1
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1607.4 1327 60.6
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1604.7 1326 61.4
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1598.6 1333 60.3
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1597.4 1477 56.2
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1592.8 1335 61.3
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1590.9 1338 60.1
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1588.5 1351 60.1
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1588.2 1338 60.2
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1584.7 1253 63.0
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1582.4 1343 60.5
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 1580.8 1335 61.1
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1576.6 1333 59.8
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1576.2 1331 60.9
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1575.8 1342 60.2
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1575.8 1337 60.1
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1570.8 1332 60.7
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1569.3 1331 60.5
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1567.0 1332 60.6
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1563.5 1294 60.8
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1562.0 1344 59.4
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1561.2 1344 59.6
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1332 60.2
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1545.8 1333 59.9
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1544.6 1334 59.8
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1542.7 1341 58.8
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1533.5 1351 59.0
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1528.1 1339 58.7
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1514.2 1340 58.1
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1513.0 1338 59.5
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1509.6 1345 57.6
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1508.0 1335 57.5
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1499.2 1347 57.5
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1496.5 1339 58.7
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1493.4 1339 57.1
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1491.5 1343 57.3
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1490.3 1332 57.1
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1486.5 1325 58.2
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1484.9 1334 56.5
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1483.4 1334 56.0
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1480.7 1207 61.9
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1479.5 1207 61.6
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1478.8 1333 56.4
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1477.2 1340 55.7
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1476.5 1336 56.4
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1473.8 1341 57.5
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1469.5 1340 56.6
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1467.2 1340 56.0
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1466.1 1340 56.6
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1465.3 1330 56.4
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1464.9 1339 56.8
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1463.0 1315 57.1
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1456.8 1343 57.0
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1453.0 1336 56.6
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1448.7 1342 56.2
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1447.2 1335 56.1
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1446.8 1346 56.5
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1394.4 1324 55.4
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1379.4 1300 55.0
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1377.8 1320 53.9
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1377.8 1324 54.9
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1370.1 1323 54.9
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1370.1 1257 54.8
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1363.6 1321 54.7
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1360.1 1331 54.8
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1347.4 1317 53.9
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1342.8 1319 53.9
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1340.5 1317 53.7
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1335.5 1316 53.5
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1331.6 1316 53.4
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1331.6 1316 53.4
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1331.2 1326 53.7
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1258.8 1327 50.8
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1252.7 1325 50.6
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1231.1 1341 48.8
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1222.6 1335 48.5
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1220.3 984 63.9
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1198.0 1337 47.3
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1195.3 1076 58.0
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1161.0 908 63.7
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1122.5 975 59.2
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1075.1 859 62.6
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 4.4e-309 1065.1 1243 48.0
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.8e-278 963.4 1312 45.7
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 9.4e-275 951.0 1289 41.9
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.7e-247 860.5 1284 39.7
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 2.3e-241 840.1 1316 39.4
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 3.5e-229 799.7 1128 40.2
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 2.3e-228 797.0 1286 37.0
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.1e-225 786.6 962 44.9
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 3.1e-161 573.9 587 50.4
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.7e-159 568.2 477 58.3
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 1.4e-150 538.5 589 50.9
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 5.4e-113 413.7 1067 29.1
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 6.2e-101 373.6 291 61.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 5.2e-100 370.5 364 52.5
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 9.8e-99 366.3 318 57.5
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 1.3e-98 365.9 324 53.7
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 9.9e-83 313.2 1066 26.6
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 1.9e-78 298.9 265 63.8
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.2e-66 258.8 205 61.0
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 1.5e-62 246.1 236 52.5
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 1.4e-60 239.6 310 44.8
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 9.0e-60 236.9 183 61.7
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 2.6e-51 208.8 301 42.9
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 5.9e-43 181.0 183 51.4
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 3.8e-34 151.8 119 62.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 7.2e-33 147.5 675 25.5
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 1.7e-29 136.3 127 57.5
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 2.3e-23 115.9 123 52.0
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 2.0e-19 102.8 74 64.9
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.9e-18 99.0 102 45.1
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 1.0e-15 90.5 71 64.8
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 1.0e-15 90.5 71 64.8
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.8e-13 82.4 111 44.1
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 2.1e-08 66.2 70 57.1
BolC7t41437H Brassica oleracea HOM05D005691 ORTHO05D027513 8.0e-08 64.3 220 26.8


User provided reference genes

Program Settings