Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 0.0e+00 1081.6 540 100.0
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 1.7e-246 855.9 553 79.0
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.6e-244 849.4 566 77.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 1.9e-218 762.7 559 69.9
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.6e-217 758.4 552 71.2
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.3e-202 708.4 551 67.9
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 9.6e-202 707.2 545 67.5
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 9.6e-202 707.2 552 65.9
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 2.1e-201 706.1 555 65.9
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.6e-201 705.3 560 65.4
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 1.1e-200 703.7 548 66.6
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 2.4e-200 702.6 557 66.6
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.1e-200 702.2 553 68.2
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 2.6e-199 699.1 553 66.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 4.5e-199 698.4 551 67.0
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 7.6e-199 697.6 553 66.5
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.3e-198 696.8 553 66.2
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 2.9e-198 695.7 547 66.7
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 3.8e-198 695.3 547 65.4
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 5.4e-197 691.4 542 65.5
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 7.1e-197 691.0 543 64.8
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.2e-196 690.3 550 65.6
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.7e-196 689.1 549 65.4
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.5e-196 688.7 548 65.5
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 4.6e-196 688.3 552 65.4
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 7.9e-196 687.6 548 65.3
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.0e-195 687.2 544 66.2
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 2.3e-195 686.0 557 63.9
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 2.3e-195 686.0 551 64.6
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.9e-195 685.3 545 64.8
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 1.1e-194 683.7 552 64.1
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 2.5e-194 682.6 554 64.1
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 3.3e-194 682.2 551 64.8
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 3.3e-194 682.2 574 63.2
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 7.4e-194 681.0 554 64.1
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 9.6e-194 680.6 552 64.7
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 3.7e-193 678.7 548 64.6
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 6.2e-193 677.9 548 64.8
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 1.8e-192 676.4 547 65.6
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.1e-192 675.6 549 64.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 3.1e-192 675.6 545 62.9
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 5.3e-192 674.9 573 61.6
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 5.3e-192 674.9 552 63.4
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 5.3e-192 674.9 547 63.6
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 6.9e-192 674.5 552 64.5
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 6.9e-192 674.5 547 64.2
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.2e-191 673.7 552 64.7
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.5e-191 673.3 562 63.2
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 3.4e-191 672.2 548 64.8
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 5.8e-191 671.4 548 63.7
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 9.9e-191 670.6 547 64.5
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.3e-190 670.2 568 62.3
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 2.2e-190 669.5 548 65.3
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 3.8e-190 668.7 548 63.5
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 7.1e-189 664.5 517 66.7
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 9.3e-189 664.1 554 63.9
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 9.3e-189 664.1 554 63.9
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.2e-188 663.7 550 64.4
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 1.2e-188 663.7 595 60.5
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 1.2e-188 663.7 555 63.4
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.6e-188 663.3 535 63.2
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.1e-188 662.9 549 64.5
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 2.7e-188 662.5 535 63.2
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 3.5e-188 662.1 548 64.2
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 6.0e-188 661.4 552 62.5
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 1.6e-185 653.3 545 62.9
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 2.1e-185 652.9 572 61.5
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 2.4e-184 649.4 562 61.6
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 5.3e-184 648.3 642 55.5
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 9.0e-184 647.5 550 62.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 1.5e-183 646.7 551 61.2
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 5.8e-183 644.8 547 62.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.1e-181 640.6 534 63.3
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.4e-181 640.2 541 61.0
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 1.3e-179 633.6 541 62.1
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.8e-179 633.3 554 61.4
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 3.0e-179 632.5 541 62.1
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.5e-178 629.4 544 61.2
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 8.2e-177 624.4 535 61.3
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 5.9e-175 618.2 592 57.8
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 1.1e-173 614.0 545 58.9
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 1.9e-170 603.2 499 63.9
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 4.3e-170 602.1 560 56.2
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 7.4e-170 601.3 556 57.0
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 3.1e-168 595.9 528 59.7
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 1.7e-166 590.1 589 56.4
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 5.0e-166 588.6 462 66.7
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.9e-164 581.3 564 57.3
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 1.3e-161 573.9 491 61.7
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.5e-159 567.0 498 60.2
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 5.9e-159 565.1 391 71.1
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.2e-156 557.4 546 57.0
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 3.9e-155 552.4 509 59.3
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 4.5e-151 538.9 391 68.8
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.9e-150 536.2 544 54.6
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.5e-149 533.1 472 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 1.8e-144 516.9 533 51.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.4e-141 504.6 532 53.2
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 2.2e-137 493.4 553 48.6
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.4e-136 490.0 556 51.1
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 1.6e-132 477.2 434 59.9
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 7.8e-127 458.4 276 78.3
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 2.9e-126 456.4 275 79.3
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 5.0e-118 429.1 467 51.8
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 6.2e-116 422.2 342 60.8
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.9e-113 413.3 385 60.5
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 2.1e-111 407.1 320 60.3
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.6e-109 399.1 282 76.2
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 4.4e-106 389.4 545 45.7
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 7.8e-103 378.6 532 44.0
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 7.8e-103 378.6 217 81.6
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.6e-100 370.9 366 56.8
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.6e-92 343.2 389 51.9
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 9.6e-85 318.5 549 34.8
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 9.6e-85 318.5 403 48.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.9e-81 307.0 266 59.0
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 4.9e-81 306.2 186 78.0
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 7.1e-80 302.4 504 37.9
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 1.6e-79 301.2 186 78.5
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 8.7e-78 295.4 494 37.4
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.8e-74 282.7 207 63.8
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 5.1e-70 269.6 305 50.2
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.0e-66 257.7 312 42.3
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 9.7e-61 238.8 284 54.2
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.2e-60 237.7 314 40.8
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 3.6e-55 220.3 140 74.3
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 2.3e-54 217.6 274 48.5
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 6.7e-54 216.1 278 48.9
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 2.8e-52 210.7 119 80.7
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.5e-42 178.3 238 45.0
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.4e-40 171.8 415 30.8
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.8e-35 154.8 93 76.3
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 3.8e-33 147.1 360 25.8
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 7.2e-32 142.9 123 57.7
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 6.8e-30 136.3 385 28.6
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 2.0e-29 134.8 82 74.4
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 2.8e-20 104.4 97 56.7
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.6e-18 98.6 60 75.0
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 6.6e-17 93.2 180 33.3
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 9.8e-13 79.3 55 65.5
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 4.1e-11 73.9 60 53.3
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 4.3e-08 63.9 45 64.4


User provided reference genes

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