Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 0.0e+00 1811.6 1016 100.0
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 0.0e+00 1351.3 1049 78.5
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 0.0e+00 1317.0 1034 75.1
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 0.0e+00 1305.4 1027 78.0
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 0.0e+00 1233.0 1045 69.0
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 2.6e-293 1012.3 1062 61.1
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 1.4e-291 1006.5 1106 59.7
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 2.5e-291 1005.7 1050 57.9
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 3.2e-291 1005.4 1059 61.0
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 1.6e-290 1003.0 1076 59.0
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 3.3e-288 995.3 1022 62.0
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 4.8e-287 991.5 1022 62.2
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 1.8e-286 989.6 1061 58.7
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 2.4e-286 989.2 1053 60.6
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 1.2e-285 986.9 1054 60.7
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 1.3e-284 983.4 1061 55.7
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 1.4e-283 979.9 1072 60.6
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 3.2e-283 978.8 1058 59.7
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 5.5e-283 978.0 1059 61.2
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 1.2e-282 976.9 1041 58.8
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 1.6e-282 976.5 1072 59.2
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 6.1e-282 974.5 1087 53.2
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 7.9e-282 974.2 1053 57.0
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 1.3e-281 973.4 1058 58.7
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 1.8e-281 973.0 1079 53.7
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 8.7e-281 970.7 1082 57.2
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 1.1e-280 970.3 1059 59.0
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 2.5e-280 969.1 1042 58.9
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 2.8e-279 965.7 1052 60.3
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 4.8e-279 964.9 1049 56.9
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 1.4e-278 963.4 1071 55.9
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 3.1e-278 962.2 1081 58.5
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 4.1e-278 961.8 1050 59.6
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 6.9e-278 961.1 1042 57.1
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 6.9e-278 961.1 1076 57.6
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 1.7e-276 956.4 1059 54.1
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 3.8e-276 955.3 1046 57.6
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 8.5e-276 954.1 1073 57.1
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 1.4e-275 953.4 1062 54.0
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 3.2e-275 952.2 1054 59.0
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 5.5e-275 951.4 1055 57.3
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 1.6e-274 949.9 1051 58.9
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 2.1e-274 949.5 1066 59.0
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 2.7e-274 949.1 1053 59.0
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 2.7e-274 949.1 1058 58.3
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 3.6e-274 948.7 1051 59.6
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 6.7e-273 944.5 1056 58.4
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 1.1e-272 943.7 1048 59.3
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 1.1e-272 943.7 1048 59.3
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 3.3e-272 942.2 1059 58.2
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 4.4e-272 941.8 1075 57.5
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 7.4e-272 941.0 1053 60.1
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 1.3e-271 940.3 1055 58.2
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 3.7e-271 938.7 1068 59.7
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 4.8e-271 938.3 1062 59.2
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 8.2e-271 937.6 1040 55.8
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 1.1e-270 937.2 1038 56.0
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 7.7e-269 931.0 1040 54.9
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 1.7e-268 929.9 1059 57.3
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 1.6e-266 923.3 1046 57.3
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 2.7e-266 922.5 1042 57.8
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 1.8e-265 919.8 1062 56.7
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 2.6e-264 916.0 1044 57.0
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 3.7e-263 912.1 1048 56.6
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 6.3e-263 911.4 1066 56.0
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 1.4e-262 910.2 1046 56.3
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 2.0e-261 906.4 1064 55.9
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 1.5e-256 890.2 1042 57.1
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 1.7e-255 886.7 977 58.4
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 2.2e-255 886.3 1061 55.7
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 6.3e-255 884.8 1026 56.6
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 3.5e-253 879.0 1029 57.4
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 2.9e-252 875.9 1009 58.8
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 3.4e-248 862.4 1044 55.0
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 7.7e-245 851.3 1039 55.4
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 4.0e-241 839.0 1117 50.8
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 1.7e-231 807.0 1005 55.0
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 8.3e-231 804.7 1002 56.6
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 1.5e-216 757.3 780 62.9
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 2.6e-216 756.5 780 63.5
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 3.7e-215 752.7 1190 46.2
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 3.3e-211 739.6 783 62.1
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 1.2e-210 737.6 782 62.5
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 8.4e-207 724.9 803 56.5
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 4.1e-206 722.6 757 62.7
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 2.4e-201 706.8 773 61.1
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 3.9e-196 689.5 786 57.9
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 3.4e-192 676.4 750 60.7
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 9.0e-185 651.7 741 59.5
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 1.3e-180 637.9 943 48.3
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 1.8e-172 610.9 1165 42.4
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 5.5e-166 589.3 1118 43.4
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 2.9e-159 567.0 783 51.1
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 1.2e-157 561.6 997 41.1
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 8.2e-154 548.9 542 54.1
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.9e-150 537.7 741 50.7
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 1.0e-148 531.9 767 52.0
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 7.5e-115 419.5 422 55.9
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 2.7e-112 411.0 727 45.0
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 4.0e-84 317.4 344 54.9
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 7.8e-80 303.1 178 78.7
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 4.3e-78 297.4 214 63.6
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 1.3e-74 285.8 230 61.3
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 3.9e-71 274.2 412 41.7
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 5.6e-70 270.4 154 76.0
Actinidia28669 Actinidia chinensis HOM05D006172 ORTHO05D005515 2.1e-64 251.9 219 62.6
MBI02_g21856_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 7.9e-64 250.0 458 47.8
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 6.7e-63 246.9 462 36.1
CARHR252880 Cardamine hirsuta HOM05D006172 ORTHO05D005515 1.3e-61 242.7 228 58.3
Atru.chr10.2224 Acer truncatum HOM05D006172 ORTHO05D005515 8.2e-61 240.0 213 58.2
CDE11G0148 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 1.2e-59 236.1 362 42.8
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 2.0e-59 235.3 277 46.9
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 5.8e-59 233.8 276 46.4
SHI02199 Sapria himalayana HOM05D006172 ORTHO05D005515 2.5e-57 228.4 228 56.1
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 6.9e-44 183.7 102 82.4
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 3.2e-41 174.9 224 49.1
AagrBONN_evm.TU.Sc2ySwM_362.1355 Anthoceros agrestis HOM05D006172 ORTHO05D005515 1.0e-39 169.9 257 41.2
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 2.8e-37 161.8 98 74.5
CBR_g49836 Chara braunii HOM05D006172 ORTHO05D004693 5.9e-35 154.1 274 39.8
HPP92_012400 Vanilla planifolia HOM05D006172 ORTHO05D005515 1.3e-34 152.9 211 46.0
HPP92_012316 Vanilla planifolia HOM05D006172 ORTHO05D005515 8.2e-29 133.7 202 44.6
unitig_37.g12155 Utricularia gibba HOM05D006172 ORTHO05D005515 6.3e-21 107.5 112 49.1
unitig_37.g12154 Utricularia gibba HOM05D006172 ORTHO05D005515 3.8e-18 98.2 87 62.1
Cfa027274 Carpinus fangiana HOM05D006172 ORTHO05D005515 4.7e-16 91.3 229 31.0
Peaxi162Scf00627g00310 Petunia axillaris HOM05D006172 ORTHO05D005515 2.2e-13 82.4 56 60.7
Os07g0515000 Oryza sativa ssp. japonica HOM05D006172 ORTHO05D005515 1.8e-07 62.8 41 61.0
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 4.0e-07 61.6 92 34.8
EL10Ac4g08040 Beta vulgaris HOM05D002586 ORTHO05D007009 5.2e-07 61.2 118 33.9
Actinidia35288 Actinidia chinensis HOM05D002586 ORTHO05D007009 8.9e-07 60.5 150 29.3
Gohir.D11G309900 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-06 58.5 78 38.5
Gohir.D13G111400 Gossypium hirsutum HOM05D001137 ORTHO05D001967 3.4e-06 58.5 78 38.5
Gorai.007G342000 Gossypium raimondii HOM05D001137 ORTHO05D001967 3.4e-06 58.5 78 38.5
Lalb_Chr06g0169971 Lupinus albus HOM05D001137 ORTHO05D001967 4.4e-06 58.2 81 34.6
Os12g0540800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D001967 4.4e-06 58.2 77 39.0
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 5.7e-06 57.8 166 29.5
HanXRQChr11g0331971 Helianthus annuus HOM05D002586 ORTHO05D007009 5.7e-06 57.8 112 31.2
Peaxi162Scf00000g00783 Petunia axillaris HOM05D002586 ORTHO05D007009 5.7e-06 57.8 117 31.6
QL02p099119 Quercus lobata HOM05D000013 ORTHO05D000011 5.7e-06 57.8 63 49.2
Gorai.013G125100 Gossypium raimondii HOM05D001137 ORTHO05D001967 9.8e-06 57.0 78 37.2


User provided reference genes

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