Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 2.2e-151 538.9 268 100.0
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.4e-89 332.8 276 67.0
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 3.6e-85 318.9 248 70.6
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 1.1e-84 317.4 285 63.9
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 1.3e-77 293.9 259 63.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 3.7e-77 292.4 279 61.6
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.0e-76 288.9 265 62.3
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 6.9e-76 288.1 260 62.3
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 9.0e-76 287.7 272 62.9
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.5e-75 287.0 230 68.3
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 2.6e-75 286.2 283 60.1
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 3.4e-75 285.8 234 66.7
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 4.5e-75 285.4 267 60.7
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 5.8e-75 285.0 234 67.1
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 5.8e-75 285.0 280 61.1
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.3e-74 283.9 266 59.8
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 2.9e-74 282.7 284 59.2
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 3.8e-74 282.3 239 64.9
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 3.8e-74 282.3 229 65.5
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 4.9e-74 282.0 268 61.2
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.9e-74 282.0 280 60.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 4.9e-74 282.0 283 56.9
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 8.4e-74 281.2 266 59.4
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 8.4e-74 281.2 277 59.2
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 8.4e-74 281.2 277 58.8
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 1.1e-73 280.8 277 58.1
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.4e-73 280.4 229 66.4
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.9e-73 280.0 278 58.3
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.9e-73 280.0 266 60.2
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 3.2e-73 279.3 264 60.2
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 3.2e-73 279.3 242 63.2
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 5.5e-73 278.5 267 58.8
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.5e-73 278.5 289 58.1
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.5e-73 278.5 280 59.6
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 5.5e-73 278.5 289 58.1
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 5.5e-73 278.5 278 57.9
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 5.5e-73 278.5 230 65.7
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 2.7e-72 276.2 292 57.5
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.7e-72 276.2 277 58.1
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.5e-72 275.8 288 56.2
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 3.5e-72 275.8 282 57.8
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 4.6e-72 275.4 278 58.6
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.6e-72 275.4 277 57.8
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 4.6e-72 275.4 277 58.1
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 4.6e-72 275.4 280 57.1
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 6.0e-72 275.0 284 59.2
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 7.9e-72 274.6 262 59.5
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 7.9e-72 274.6 282 57.1
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.0e-71 274.2 227 65.2
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.3e-71 273.9 232 63.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 1.3e-71 273.9 274 56.9
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.3e-71 273.9 275 58.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.3e-71 273.9 277 57.8
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.3e-71 273.9 280 58.6
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.3e-71 273.9 276 58.3
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.3e-71 273.9 266 56.8
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 2.3e-71 273.1 287 57.8
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 3.0e-71 272.7 255 59.2
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 3.0e-71 272.7 292 56.5
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 3.9e-71 272.3 279 58.1
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.9e-71 272.3 266 58.3
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 5.1e-71 271.9 236 61.4
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 6.7e-71 271.6 232 63.8
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 6.7e-71 271.6 277 57.0
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 6.7e-71 271.6 279 58.1
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 1.1e-70 270.8 258 59.7
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.5e-70 270.4 239 60.3
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.9e-70 270.0 238 62.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 1.9e-70 270.0 270 58.1
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 1.9e-70 270.0 278 57.9
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 3.3e-70 269.2 225 63.6
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 3.3e-70 269.2 258 58.5
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 4.3e-70 268.9 232 63.4
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 5.6e-70 268.5 263 58.9
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 7.4e-70 268.1 278 57.2
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 7.4e-70 268.1 276 55.4
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 9.6e-70 267.7 278 57.2
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 9.6e-70 267.7 270 57.0
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 1.3e-69 267.3 277 57.4
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 1.6e-69 266.9 278 55.4
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.6e-69 266.9 286 55.2
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 2.1e-69 266.5 261 56.3
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.8e-69 265.4 284 56.0
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 6.2e-69 265.0 275 57.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 6.2e-69 265.0 275 57.1
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 6.2e-69 265.0 281 54.8
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 8.2e-69 264.6 240 61.7
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 8.2e-69 264.6 240 61.7
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 8.2e-69 264.6 220 63.2
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 8.2e-69 264.6 235 61.7
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.4e-68 263.8 220 64.5
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 1.8e-68 263.5 284 54.6
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 1.8e-68 263.5 237 60.3
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 1.8e-68 263.5 228 61.4
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.4e-68 263.1 211 65.9
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.4e-68 263.1 236 59.7
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 3.1e-68 262.7 226 62.8
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 3.1e-68 262.7 239 61.1
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.0e-68 262.3 267 55.8
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 4.0e-68 262.3 233 60.9
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 4.0e-68 262.3 288 54.9
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 9.0e-68 261.2 274 56.9
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 1.0e-66 257.7 214 64.0
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 4.9e-66 255.4 231 59.7
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 8.4e-66 254.6 259 55.2
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 7.1e-65 251.5 218 61.9
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 2.1e-64 250.0 238 58.0
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.8e-63 246.9 230 57.0
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.1e-63 245.4 268 53.7
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.3e-62 242.3 207 63.3
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.3e-61 240.7 242 56.2
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 2.4e-60 236.5 227 55.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 1.2e-56 224.2 260 53.1
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 3.0e-55 219.5 206 55.3
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 3.9e-55 219.2 198 59.6
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 9.7e-54 214.5 264 48.1
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 8.2e-53 211.5 205 51.7
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.3e-50 204.1 252 50.0
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 8.5e-50 201.4 211 52.1
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 5.1e-47 192.2 163 65.0
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 9.1e-44 181.4 239 47.7
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 5.5e-41 172.2 233 47.6
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.4e-39 167.5 139 64.7
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 3.7e-37 159.5 158 57.6
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.4e-36 156.8 149 59.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 2.4e-36 156.8 122 65.6
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.8e-34 149.4 85 88.2
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-33 147.5 150 55.3
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.9e-33 147.1 150 54.7
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 5.5e-33 145.6 109 67.9
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 1.4e-31 141.0 94 73.4
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 2.3e-31 140.2 78 89.7
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.3e-29 134.4 75 90.7
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.4e-28 131.0 99 69.7
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 8.5e-26 121.7 71 85.9
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 1.5e-22 110.9 161 43.5
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 2.8e-21 106.7 83 68.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.9e-18 96.7 202 28.7
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-15 87.0 49 83.7
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 4.0e-15 86.3 38 92.1
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 8.3e-13 78.6 53 71.7
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.9e-09 67.4 111 40.5
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 3.3e-09 66.6 65 52.3
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.8e-07 60.8 27 92.6
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.8e-07 60.8 27 92.6


User provided reference genes

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