Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 0.0e+00 1640.6 822 100.0
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 0.0e+00 1387.5 835 83.2
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 0.0e+00 1387.1 825 83.9
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 0.0e+00 1222.6 829 73.2
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 0.0e+00 1211.1 823 74.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 0.0e+00 1078.2 827 64.8
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 1.1e-311 1072.8 756 70.1
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 7.3e-310 1067.0 827 65.3
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 2.1e-309 1065.4 821 65.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 4.7e-309 1064.3 825 65.2
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.3e-308 1062.0 827 65.2
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 5.2e-308 1060.8 824 65.3
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 1.7e-306 1055.8 824 65.4
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 6.4e-306 1053.9 827 64.8
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 1.8e-305 1052.4 820 64.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 4.6e-304 1047.7 818 63.7
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 5.0e-303 1044.3 820 64.4
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 3.3e-302 1041.6 822 64.2
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 5.6e-302 1040.8 817 64.5
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.6e-301 1039.3 820 64.3
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-301 1038.5 821 64.3
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 3.1e-300 1035.0 819 64.5
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.5e-299 1032.7 821 63.3
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 9.8e-299 1030.0 818 63.3
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 1.7e-298 1029.2 820 63.4
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.7e-298 1029.2 819 64.2
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 1.1e-297 1026.5 820 63.3
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 2.4e-297 1025.4 823 63.4
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 4.1e-297 1024.6 824 64.3
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.7e-296 1021.9 820 63.3
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 8.6e-295 1016.9 818 62.2
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 1.1e-294 1016.5 817 64.0
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.2e-293 1010.7 840 60.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 4.4e-291 1004.6 820 61.3
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 1.6e-288 996.1 789 63.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.3e-287 993.0 795 62.4
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.5e-286 988.8 828 61.6
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 2.3e-284 982.2 831 60.9
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 8.9e-284 980.3 746 66.2
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 5.8e-283 977.6 816 60.5
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 3.8e-282 974.9 826 60.2
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 5.4e-281 971.1 728 66.9
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 7.1e-281 970.7 847 58.7
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.1e-281 970.7 820 61.6
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 6.6e-279 964.1 816 60.3
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 9.6e-278 960.3 806 62.0
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 8.1e-277 957.2 807 61.7
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 2.4e-276 955.7 834 59.2
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 3.1e-276 955.3 822 59.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 9.0e-276 953.7 824 58.6
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.5e-275 953.0 789 61.3
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 5.8e-275 951.0 807 61.7
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 1.3e-274 949.9 823 59.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 2.2e-274 949.1 823 58.9
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.1e-273 946.8 824 59.1
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.4e-273 946.4 885 56.2
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 7.1e-273 944.1 834 57.9
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.3e-273 943.7 820 60.6
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 3.5e-272 941.8 833 58.2
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.3e-271 939.1 791 61.3
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.0e-271 938.7 820 59.1
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.9e-271 938.3 800 61.0
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 8.7e-271 937.2 796 61.3
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 8.7e-271 937.2 796 61.1
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 4.3e-270 934.9 816 59.1
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 5.6e-270 934.5 799 61.3
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 2.1e-269 932.6 798 61.3
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 3.6e-269 931.8 825 57.7
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 2.0e-267 926.0 790 60.8
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.4e-265 919.8 806 60.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 2.4e-265 919.1 824 57.0
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.8e-263 912.9 824 56.2
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.9e-262 909.4 826 56.9
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 4.3e-262 908.3 827 57.0
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 5.6e-262 907.9 822 56.1
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 8.1e-261 904.0 824 56.2
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.1e-260 903.7 824 56.3
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 6.9e-260 901.0 824 56.3
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 9.0e-260 900.6 824 58.9
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 1.2e-256 890.2 850 54.7
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 1.2e-256 890.2 825 55.9
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 7.4e-254 880.9 824 55.7
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.1e-249 867.1 926 51.3
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 4.2e-249 865.1 800 55.6
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.7e-247 857.4 859 55.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.0e-242 844.0 795 55.0
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.9e-236 821.2 616 67.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 6.9e-236 821.2 616 67.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.6e-232 808.9 607 66.2
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.8e-229 799.3 628 65.0
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 8.2e-221 771.2 591 65.1
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 1.5e-217 760.4 824 50.0
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 2.8e-213 746.1 617 64.2
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.0e-202 711.1 621 59.1
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 7.2e-201 704.9 719 51.3
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 2.0e-198 696.8 766 47.7
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 5.2e-191 672.2 827 46.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 5.8e-190 668.7 812 43.7
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 1.7e-186 657.1 719 47.8
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 2.1e-163 580.5 545 56.5
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.5e-158 564.3 408 67.9
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 4.2e-156 556.2 471 58.6
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-151 541.6 493 57.6
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.8e-146 524.2 542 50.2
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 8.4e-141 505.4 394 65.0
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 8.7e-130 468.8 783 37.4
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.1e-124 451.8 344 63.4
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.2e-124 449.9 808 36.1
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.6e-123 446.8 349 63.9
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.9e-123 445.7 345 64.1
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 9.7e-121 438.7 397 57.7
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 2.0e-113 414.5 747 36.7
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 6.3e-96 356.3 476 45.0
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.3e-93 348.6 453 42.6
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 1.8e-87 328.2 280 62.1
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 4.1e-79 300.4 245 59.6
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 8.0e-75 286.2 297 52.9
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 5.2e-74 283.5 858 29.3
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.5e-70 270.8 183 70.5
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.9e-68 265.0 303 46.5
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 4.3e-68 263.8 320 43.4
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 5.6e-68 263.5 377 44.6
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.7e-56 225.3 203 56.2
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 3.9e-53 214.2 234 46.2
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.8e-51 208.0 144 68.1
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.4e-47 194.9 179 55.9
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 7.1e-47 193.4 176 57.4
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 3.9e-45 187.6 232 50.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.6e-41 174.9 172 55.8
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.2e-39 167.5 172 53.5
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 5.4e-39 167.2 211 39.8
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.7e-38 164.9 213 44.1
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.4e-34 151.8 129 58.1
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.9e-23 115.5 161 42.2
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 7.9e-22 110.2 752 21.7
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-16 92.8 119 39.5
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 9.0e-10 70.1 322 22.7
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.0e-08 64.3 43 69.8
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 1.4e-07 62.8 92 40.2
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 2.7e-06 58.5 67 46.3


User provided reference genes

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